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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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NWBwidgets Resource Report Resource Website 1+ mentions |
NWBwidgets (RRID:SCR_021154) | software resource | of widgets for visualization NWB data in Jupyter notebook. Widgets allow you to navigate through hierarchical structure of NWB file and visualize specific data elements. Designed to work with NWB 2.0 files and to be easy to extend. | visualization NWB data, Jupyter notebook, widgets library, NWB file hierarchical structure, | is listed by: Neurodata Without Borders | Free, Available for download, Freely available | https://www.nwb.org/tools/ | SCR_021154 | 2026-08-01 12:07:06 | 2 | |||||||||
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Bash Resource Report Resource Website 10+ mentions |
Bash (RRID:SCR_021268) | software resource | GNU Project shell. Sh-compatible shell that incorporates useful features from Korn shell (ksh) and the C shell (csh). Improvements offered by Bash include command-line editing, unlimited size command history,job control,shell functions and aliases,indexed arrays of unlimited size,integer arithmetic in any base from two to sixty four. | GNU Project shell, command-line editing, unlimited size command history, job control, shell functions and aliases, indexed arrays of unlimited size, integer arithmetic | Free, Freely available | SCR_021268 | Bourne Again SHell | 2026-08-01 12:07:15 | 12 | ||||||||||
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Nikon: Eclipse E200 microscope Resource Report Resource Website 1+ mentions |
Nikon: Eclipse E200 microscope (RRID:SCR_021243) | instrument resource | Educational microscope. Designed as simple system that reduces fatigue from use over long periods. With structure and anti mold design, offers high quality and accuracy that can be retained for years even in hot and humid environments. | Educational microscope, anti mold design microscope, instrument, equipment, USEDit | is listed by: USEDit | Commercially available | Model_Number_Eclipse_E200 | SCR_021243 | Eclipse E200, Eclipse E200 microscope | 2026-08-01 12:07:08 | 3 | ||||||||
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Nikon: ECLIPSE Ti inverted microscope system Resource Report Resource Website 10+ mentions |
Nikon: ECLIPSE Ti inverted microscope system (RRID:SCR_021242) | instrument resource | ECLIPSE Ti Series of inverted microscopes combined with Nikon NIS-Elements imaging acquisition and analysis software, enables to generate data faster, more easily, and more accurately than ever before.Product Discontinued. Replaced by ECLIPSE Ti2 Series. | ECLIPSE Ti Series, inverted microscopes, Nikon NIS-Elements software, instrument, equipment, USEDit | is related to: Nikon: ECLIPSE Ti2 inverted microscope | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_021242 | Model_Number_Ti | SCR_021242 | Nikon ECLIPSE Ti inverted microscope | 2026-08-01 12:07:15 | 31 | ||||||||
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Roche: Ventana DISCOVERY Ultra Resource Report Resource Website 10+ mentions |
Roche: Ventana DISCOVERY Ultra (RRID:SCR_021254) | instrument resource | Immunohistochemistry processor that can be used for immunohistochemistry and in situ hybridization slide preparation and processing. With 30 individual slide drawers, DISCOVERY ULTRA system enables to run both manual and fully automated experiments simultaneously with nosynchronization errors. Provides ability to fully automate broad range of IHC and ISH assays, including FISH, gene and protein IHC/ISH, mRNA ISH and multiplex assays with any combination of IHC and ISH. | Immunohistochemistry processor, slide preparation, slide processing, instrument, equipment, USEDit | is listed by: USEDit | Commercially available | SCR_021254 | DISCOVERY ULTRA, Ventana DISCOVERY Ultra IHC/ISH research platform, VENTANA DISCOVERY ULTRA AUTOMATED SLIDE PREPARATION SYSTEM | 2026-08-01 12:07:15 | 14 | |||||||||
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Social LEAP Resource Report Resource Website 1+ mentions |
Social LEAP (RRID:SCR_021382) | SLEAP | software resource | Method for pose estimation that uses deep neural networks.Open source software tool as deep learning based framework for estimating positions of animal body parts.Supports multi animal pose estimation and tracking, and includes advanced labeling or training.SLEAP is next generation of LEAP and allows for tracking multiple animals. | Estimating positions, animal body parts, multi animal pose estimation, multi animal pose tracking, Princeton University, OpenBehavior |
is listed by: OpenBehavior is related to: SLEAP, LEAP and MotionMapper project has parent organization: Princeton University; New Jersey; USA |
NSF GRFP ; DGE 1148900;Princeton Porter Ogden Jacobus Fellowship;NIMH R00 MH109674;NIGMS DP2 GM137424;NSF ; DEB 1754476;R01 NS104899;NSF ; PHY 1734030; |
DOI:10.1101/2020.08.31.276246 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/sleap/ | SCR_021382 | Social LEAP Estimates Animal Pose | 2026-08-01 12:07:17 | 6 | |||||
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IQVIA Resource Report Resource Website 10+ mentions |
IQVIA (RRID:SCR_021377) | commercial organization | IQVIA, formerly Quintiles and IMS Health, Inc., is an American multinational company serving the combined industries of health information technology and clinical research. | American company, health information technology, clinical research | is related to: Quintiles | SCR_021377 | 2026-08-01 12:07:08 | 35 | |||||||||||
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SHapley Additive ExPlanations Resource Report Resource Website 50+ mentions |
SHapley Additive ExPlanations (RRID:SCR_021362) | SHAP | software resource | Software tool as unified framework for interpreting predictions of machine learning models. Used to explain output of any machine learning model. Connects optimal credit allocation with local explanations using classic Shapley values from game theory and their related extensions. | Interpretable machine learning, interpreting predictions, machine learning models | Free, Available for download, Freely available | SCR_021362 | 2026-08-01 12:07:16 | 84 | ||||||||||
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SpikeGadgets Resource Report Resource Website 1+ mentions |
SpikeGadgets (RRID:SCR_021623) | commercial organization | Company to design and sell powerful neuroscience hardware that interfaces with open source software platform supported by large community of scientists and developers. Support efforts of open source community in commercially sustainable way. | Open Behavior | is listed by: OpenBehavior | SCR_021623 | SpikeGadgets | 2026-08-01 12:07:21 | 1 | ||||||||||
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Kent Scientific: SomnoFlow Low Flow Electronic Vaporizer Resource Report Resource Website 1+ mentions |
Kent Scientific: SomnoFlow Low Flow Electronic Vaporizer (RRID:SCR_021629) | instrument resource | Compact, standalone vaporizer that uses either ambient air with internal air pump or compressed gas. It delivers only anesthetic required by animal according to its weight with flows down to 0.05 LPM. Low flow isoflurane anesthesia machine. | Kent Scientific, SomnoFlow, electronic vaporizer, vaporizer, instrument, equipment, USEDit | is listed by: USEDit | SCR_021629 | SomnoFlow Electronic Vaporizer, Kent Scientific SomnoFlow Electronic Vaporizer | 2026-08-01 12:07:15 | 2 | ||||||||||
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NanoString: GeoMx Digital Spatial Profiler Resource Report Resource Website 10+ mentions |
NanoString: GeoMx Digital Spatial Profiler (RRID:SCR_021660) | GeoMx DSP | instrument resource | Integrated commercial system comprising hardware, software and nCounter chemistry that enables simultaneous, highly multiplex spatial profiling of proteins or RNA in FFPE tissues. DSP platform quantifies abundance of protein or RNA by counting unique indexing oligonucleotides assigned to each target of interest. Used to rapidly and quantitatively assess biological implications of heterogeneity within tissue samples. | Spatial profiling, proteins spatial profiling, RNA spatial profiling, NanoString, counting unique indexing oligonucleotides, tissue heterogeneity, Digital Spatial Profiler, instrument, equipment, USEDit | is listed by: USEDit | PMID:32393914 | Restricted | SCR_021660 | GeoMx Digital Spatial Profiler | 2026-08-01 12:07:22 | 21 | |||||||
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Hamamatsu: NanoZoomer 2.0-HT Resource Report Resource Website 10+ mentions |
Hamamatsu: NanoZoomer 2.0-HT (RRID:SCR_021658) | instrument resource | High speed, high resolution digital scanner with network features. User friendly full slide scanner designed to process up to 210 slides automatically. | Hamamatsu, digital scanner, full slide scanner, 210 slides process, automatic scanner, instrument, equipment, USEDit | is listed by: USEDit | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_021658.pdf | Model_Number_NanoZoomer_2.0-HT | SCR_021658 | Hamamatsu NanoZoomer 2.0-HT System | 2026-08-01 12:07:22 | 25 | ||||||||
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ontquery Resource Report Resource Website 1+ mentions |
ontquery (RRID:SCR_021659) | software resource | Software tool as framework querying ontology terms within SciCrunch and SciCrunch SciGraph endpoints. | Querying ontology terms, ontology terms, SciCrunch SciGraph endpoints, querying ontology | Free | https://github.com/tgbugs/ontquery | SCR_021659 | 2026-08-01 12:07:14 | 1 | ||||||||||
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McKinley: Cellometer Auto T4 Resource Report Resource Website 1+ mentions |
McKinley: Cellometer Auto T4 (RRID:SCR_021656) | instrument resource | System includes automated cell counter for trypan blue viability for cell lines and bright field imaging and pattern recognition software to quickly and accurately identify and count individual cells. Cell count, concentration, diameter, and % viability are automatically calculated and reported. | Automated cell counter, trypan blue cell viability, bright field imaging, pattern recognition, count individual cells, cell concentration count, cell diameter count, instrument, equipment, USEDit | is listed by: USEDit | Commercially available | Model_Number_Auto_T4 | SCR_021656 | Auto T4, Nexcellom Bioscience Cellometer Auto T4 Bright Field Cell Counter, Cellometer Auto T4 Bright Field Cell Counter | 2026-08-01 12:07:14 | 2 | ||||||||
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GE: Amersham Imager 600 Resource Report Resource Website 1+ mentions |
GE: Amersham Imager 600 (RRID:SCR_021853) | instrument resource | Amersham Imager 600 is CCD camera system that produces digitial images of samples in gels or membranes in three different modes: chemiluminescence, colorimetric and fluorescent image capture. Provides imaging system to capture and analyze protein and DNA sample gels and membranes in high resolution. | USEDit, chemiluminescence, colorimetric, fluorescent, image capture, digitial images | is listed by: USEDit | Commercially available | https://photos.labwrench.com/equipmentManuals/19468-6742.pdf | SCR_021853 | GE Healthcare Amersham Imager 600, Amersham Imager 600 | 2026-08-01 12:07:25 | 7 | ||||||||
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BorutaShap Resource Report Resource Website 1+ mentions |
BorutaShap (RRID:SCR_021696) | software resource | Software tool as wrapper feature selection method which combines both Boruta feature selection algorithm with shapley values. | Wrapper feature selection method, Boruta feature selection algorithm, shapley values | Free, Available for download, Freely available | https://github.com/Ekeany/Boruta-Shap | SCR_021696 | 2026-08-01 12:07:23 | 6 | ||||||||||
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LightGBM Resource Report Resource Website 10+ mentions |
LightGBM (RRID:SCR_021697) | software resource | Software tool as gradient boosting framework that uses tree based learning algorithms. Designed to be distributed and efficient with advantages:Faster training speed and higher efficiency;Lower memory usage;Better accuracy;Support of parallel, distributed, and GPU learning;Capable of handling large scale data. | Gradient boosting framework | Free, Available for download, Freely available | https://github.com/Microsoft/LightGBM/blob/master/docs/index.rst | SCR_021697 | 2026-08-01 12:07:16 | 14 | ||||||||||
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pyxDamerauLevenshtein Resource Report Resource Website 1+ mentions |
pyxDamerauLevenshtein (RRID:SCR_021858) | software resource | Software tool implements Damerau-Levenshtein (DL) edit distance algorithm for Python in Cython for high performance. | Damerau-Levenshtein, edit distance algorithm | Free, Available for download, Freely available | SCR_021858 | 2026-08-01 12:07:18 | 1 | |||||||||||
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NanoString: nCounter Analysis System Resource Report Resource Website 10+ mentions |
NanoString: nCounter Analysis System (RRID:SCR_021712) | nCounter | instrument resource | System includes hardware and software. Options include nCounter SPRINT,nCounter MAX or nCounter FLEX. Platform used for multiplex analysis of up to 800 RNA, DNA, or protein targets. System can be combined with GeoMx Digital Spatial Profiler (DSP) to enable high-plex, spatially-resolved RNA, and protein quantification. | Multiplex analysis, RNA analysis, DNA analysis, Protein analysis, NanoString Differential Expression, NanoString, analysis system, instrument, equipment, USEDit, ABRF | is listed by: USEDit | Commercially available | SCR_021712 | nCounter Analysis System, Bruker nCounter Analysis System | 2026-08-01 12:07:16 | 29 | ||||||||
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YAML Resource Report Resource Website 10+ mentions |
YAML (RRID:SCR_021710) | software resource | YAML is a human friendly data serialization language for all programming languages. Unicode based data serialization language designed around common native data types of agile programming languages. Useful for programming needs ranging from configuration files to Internet messaging to object persistence to data auditing. | Data serialization language, common native data types, agile programming languages, configuration files, Internet messaging, object persistence, data auditing | Free, Freely available | https://yaml.org/spec/1.2.1/ | SCR_021710 | YAML 1.2 | 2026-08-01 12:07:23 | 17 |
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