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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Specification URL Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
University of New Mexico Sleep Disorders Clinic
 
Resource Report
Resource Website
University of New Mexico Sleep Disorders Clinic (RRID:SCR_007520) institution University of New Mexico Health Sciences Center Program in Sleep Medicine Sleep Disorders Center was established in 1983 and was the first nationally accredited sleep disorders center in the State of New Mexico receiving accreditation in March of 1992 from the American Academy of Sleep Medicine. They provide comprehensive services to individuals having symptoms occurring during sleep or while awake due to unrefreshing sleep. The Program combines a state-of-the-art outpatient sleep laboratory, inpatient sleep laboratory, sleep medicine clinic, and trained medical and technical staff dedicated to the diagnosis and treatment of sleep/wake disorders in adults and children. The University of New Mexico Health Sciences Center Program in Sleep Medicine has the distinction of having a first and many onlys attached to it. The criteria for accreditation is very stringent and to date, there is only one other accredited center in the entire state. The Center is also accredited by the Joint Commission on the Accreditation of Health Care Organizations. nif-0000-02225 http://medicine.unm.edu/sleep/ http://hospitals.unm.edu/SDC/, http://hospitals.unm.edu/sdc/ SCR_007520 UNM 2026-08-08 11:59:09 0
University of North Dakota Department of Pharmacology Physiology and Therapeutics
 
Resource Report
Resource Website
University of North Dakota Department of Pharmacology Physiology and Therapeutics (RRID:SCR_007523) data or information resource, graduate program resource, department portal, portal, organization portal Department of Pharmacology, Physiology and Therapeutics at the University of North Dakota School of Medicine and Health Sciences is strongly committed to providing their students and the people of North Dakota excellent programs in education, research and service and they are dedicated to the development of leadership, innovation, and scholarly excellence. The translation of fundamental knowledge in the basic sciences to medically relevant problems is a major goal of the department and they are capable of providing the individualized attention and training necessary for the development of the medical scientist of the future. nif-0000-02233 http://www.med.und.nodak.edu/depts/pharm/ SCR_007523 UND 2026-08-08 11:59:09 0
Texas Tech University Department of Pharmacology and Neuroscience
 
Resource Report
Resource Website
Texas Tech University Department of Pharmacology and Neuroscience (RRID:SCR_007483) TTU Department of Pharmacology and Neuroscience, department portal, data or information resource, portal, organization portal The Department of Pharmacology and Neuroscience at Texas Tech University is committed to providing a strong education experience for all trainees. The department's primary areas of training emphasis are neuroscience/ neuropharmacology and cardiovascular/ autonomic pharmacology.Our objective is to prepare students for careers in research and teaching. We currently have 14 faculty and who conduct research in a broad variety of subjects ranging from environmental toxicology to molecular pharmacology. This allows a broad basis for a strong theoretical as well as 'hands-on' education in pharmacology. The faculty of the program work hard to foster a creative and productive research atmosphere, to provide encouragement and positive challenges, and to equip students with the intellectual tools they will need to be good teachers and investigators. has parent organization: Texas Tech University Health Sciences Center; Texas; USA nif-0000-02098 http://www.ttuhsc.edu/som/pharmacology/ SCR_007483 Texas Tech University Department of Pharmacology Neuroscience 2026-08-08 11:58:59 0
UTHealth at Houston Neuroscience Research Center
 
Resource Report
Resource Website
UTHealth at Houston Neuroscience Research Center (RRID:SCR_007486) UTHealth NRC postdoctoral program resource, data or information resource, graduate program resource, training resource, topical portal, portal The Neuroscience Research Center (NRC) is a university-wide center where diverse and multidisciplinary research is conducted to further the understanding of neural and behavioral disorders. Whether conducting cellular research in laboratories or clinical trials in patient care settings, the work of NRC researchers may someday contribute to preventing and treating such devastating disorders as: * Dementias resulting from Alzheimer''s disease and stroke * Mental retardation and other learning disabilities * Mental illnesses, including schizophrenia and manic-depressive illness * Alcoholism and other substance abuse problems * Inability to process knowledge due to factors such as aging and head trauma * Disabilities due to disorders of the developing nervous system More than 280 faculty hold NRC appointments, and are on the faculties of the Medical School, School of Public Health, School of Nursing, Dental Branch, and School of Biomedical Informatics. Departments with significant NRC research activities within the Medical School include Neurobiology and Anatomy; Neurology; Neurosurgery; Ophthalmology and Visual Science; Psychiatry and Behavioral Sciences and Radiology. NRC activities are guided by an executive committee appointed by the President of the Health Science Center. The Neuroscience Research Center (NRC) is affiliated with educational opportunities at the graduate and postdoctoral levels. neuroscience, brain has parent organization: University of Texas Health Science Center at Houston; Texas; USA nif-0000-02108 http://nba.uth.tmc.edu/nrc/ SCR_007486 University of Texas Health Science Center at Houston Neuroscience Research Center 2026-08-08 11:58:59 0
Texas A and M Health Science Center College of Medicine Department of Neuroscience and Experimental Therapeutics
 
Resource Report
Resource Website
Texas A and M Health Science Center College of Medicine Department of Neuroscience and Experimental Therapeutics (RRID:SCR_007482) department portal, data or information resource, portal, organization portal The Department of Neuroscience and Experimental Therapeutics (NExT) at the Texas A&M Health Science Center College of Medicine has 16 full-time faculty members and is one of four basic science departments within the College of Medicine. Program strengths within the department include brain development, cellular/molecular basis of drug addiction, circadian biology, ocular pharmacology and experimental therapeutics, neurobiology of aging, neurodegenerative diseases such as stroke and Alzheimer''s disease, neuro-oncology and neuroteratology of alcohol, nicotine and other drugs of abuse. The Department of Neuroscience and Experimental Therapeutics participates in an interdisciplinary graduate program in the Medical Sciences that leads primarily to the Ph.D. degree with special emphasis in interdisciplinary training in Neurosciences or Pharmaceutical Sciences. The Ph.D. program in Medical Science usually requires 4-5 years to complete. Graduates from our program are prepared for leadership roles in research and teaching in academic, industrial, or governmental positions. Faculty within the department are affiliated with university-wide interdisciplinary faculties including the TAMU Faculty of Neuroscience rand our clinical science partner, the Texas Brain and Spine Institute. The department is also home to the Women''s Health in Neuroscience Program, consisting of interdisciplinary research faculty and a clinical advisory group aimed at developing a cohesive preclinical approach to the impact of puberty, pregnancy and menopause on brain development, mental health and brain disease. has parent organization: Texas A and M Health Science Center College of Medicine; Texas; USA Aging nif-0000-02093 SCR_007482 TAMHSC College of Medicine NExT, TAMHSC COM NExT 2026-08-08 11:58:52 0
SUNY Upstate Medical University, Pharmacology
 
Resource Report
Resource Website
SUNY Upstate Medical University, Pharmacology (RRID:SCR_007481) department portal, data or information resource, portal, organization portal Research in the Department of Pharmacology focuses on three major areas: 1) cardiovascular science 2) cell signaling 3) cancer biology and therapeutics. Within those areas, research ranges from basic biological problems to those with clinical orientations. The cardiovascular science research strives to understand the normal and abnormal functioning of the heart at the molecular, cellular and organ levels, and is exceptionally strong in cardiac electrophysiology and the mechanisms of cardiac arrhythmia. The cell signaling research concerns regulation of cell function by extracellular factors, the molecular biology of signaling pathways, cell communication, and intracellular proteolysis. The cancer biology and therapeutics research is focused on molecular mechanisms regulating cell death and survival in human malignancies, development and testing of novel cancer therapeutics, novel tumor markers, oncogenic transformation and apoptosis, regulation of tumor suppressors and molecular mechanisms of leukemogensis. The Pharmacology Department has multiple research grants for the next five years. Most of the funding comes from the National Institutes of Health (NIH), with additional funding from the Association for International Cancer Research, the American Society of Hematology, the Department of Defense and the American Heart Association. nif-0000-02084 SCR_007481 SUNY Upstate 2026-08-08 11:59:08 0
University of Salamanca; Salamanca; Spain
 
Resource Report
Resource Website
1+ mentions
University of Salamanca; Salamanca; Spain (RRID:SCR_007833) USAL university Spanish higher education institution, located in the city of Salamanca, west of Madrid, in the autonomous community of Castile and León. It was founded in 1134 and given the Royal charter of foundation by King Alfonso IX in 1218. is parent organization of: ProbeExplorer
is parent organization of: Agile Protein Interactomes DataServer
Wikidata:Q308963, grid.11762.33, nlx_149149, ISNI:0000 0001 2180 1817 https://ror.org/02f40zc51 SCR_007833 Universidad de Salamanca, University of Salamanca 2026-08-08 11:58:54 2
Solanaceae Phenotype Ontology
 
Resource Report
Resource Website
Solanaceae Phenotype Ontology (RRID:SCR_007832) SPTO ontology, data or information resource, controlled vocabulary Ontology for Solanaceae crop phenotypes and traits, developed in collaboration with the research community, especially for breeder traits of agronomic importance. obo is listed by: BioPortal nlx_157592 SCR_007832 2026-08-08 11:59:10 0
INVERTER
 
Resource Report
Resource Website
1+ mentions
INVERTER (RRID:SCR_007956) INVERTER software resource Software for a de novo exact match tandem repeat finder which main advantage is without the need to specify either the pattern or a particular pattern size, integrated with a data visualization tool and has a built-in user-friendly Graphical User Interface. is listed by: OMICtools OMICS_00108 SCR_007956 2026-08-08 11:59:02 3
ARGONAUTE 2 - A database on mammalian microRNAs and their function in gene and pathway regulation
 
Resource Report
Resource Website
1+ mentions
ARGONAUTE 2 - A database on mammalian microRNAs and their function in gene and pathway regulation (RRID:SCR_007553) database, data or information resource, data computation service A database is a of mammalian miRNAs and their known or predicted regulatory targets. It provides information on origin of miRNAs, tissue specificity of their expressions and their known or proposed functions, their potential target genes as well as data on miRNA families based on their co-expression and proteins known to be involved in miRNA processing. This database also contains three other navigation tools that can be used to find information relating to miRNA: 1.) Gene Annotations is an information retrieval system for miRNA target genes. It provides comprehensive information from sequence databases and allows to simultaneously search PubMed with all synonyms of a given gene. 2.) miRNA Motif Finder - Argonaute predicts miRNA motifs binding to the gene sequence of the user. The miRNA mature sequences are taken from Agronaute 2 database. miRNA Motif Finder - Custom predicts miRNA motifs binding to the gene sequence, both the gene sequence and miRNA mature sequences provided by the user. 3.) miRNA Statistics provides statistics for the mature miRNA sequences from Argonaute 2 as well as for the miRNA sequences uploaded by the user. It provides statitics on the individual nucleotide as well as pattern of nucleotides apperaing in the sequence. gene, metabolic and signaling pathways, mirna, protein-protein interaction, rna sequence database has parent organization: Heidelberg University; Baden-Wurttemberg; Germany Deutsche Forschungsgemein ;
Federal Ministry of Research and Education
nif-0000-02567 http://argonaute.uni-hd.de SCR_007553 ARGONAUTE 2026-08-08 11:58:53 1
BAMS Thesaurus
 
Resource Report
Resource Website
BAMS Thesaurus (RRID:SCR_008003) thesaurus THIS RESOURCE IS NO LONGER IN SERVICE, documented on January 19,2022. The BAMS Thesaurus is a part of the larger BAMS The Foundational Model of Connectivity (FMC). The principle of constructing the resource are: 1. Systematic attempts to produce internally consistent classifications and taxonomies require theoretical frameworks for deciding between alternatives. 2. Alternate classification and taxonomy schemes are always possible and must be accommodated. 3. The FMC is based on evidence, not authority. All components are justified by reference to the best observational or experimental evidence from the literature, combined with reference to priority when possible, not by undocumented statements from textbooks, the Web, or elsewhere. 4. The FMC is based on evolving evidence and concepts, revisions are based on enforced rules, and versioning is systematic and historical. The first version of FMC and the foundation of this online version was published in Swanson & Bota (2010). Please cite this reference whenever any part of the FMC is used in any way. This online version of FMC has the following main parts: 1. Thesaurus, which includes an alphabetical list of all concepts and terms used in FMC to date. The preferred terms are in bold. Clicking on each term of the Thesaurus will retrieve its definition, reference, list of synonyms, and a comment form that can be used by registered users. 2. References, which includes an alphabetical list of the literature used to construct FMC. Listed references are associated with the definitions included in the Thesaurus, and PubMed links. 3. Search form that can be used to search for terms defined in FMC, included in their definitions, their abbreviations, and references (search by authors). We strongly recommend to read FMC rules and notations before starting to use the online version. brain, anatomy, connectivity, thesaurus, THIS RESOURCE IS NO LONGER IN SERVICE nif-0000-07739 SCR_008003 2026-08-08 11:59:02 0
Health Research Funding
 
Resource Report
Resource Website
Health Research Funding (RRID:SCR_007790) funding resource Health Research Funding is designed to bring researchers with peer-reviewed, worthwhile, unfunded projects together with patient advocacy organizations and other funding sources. Working together, we hope to foster the funding of new research that will provide hope to millions of people in this country with chronic diseases and disabilities. * We invite researchers with promising projects that have been scored but not funded by the NIH to submit their abstracts. By registering, you will be able to search for information about organizations that fund research and their requests for abstracts. * Researchers with proposals that have been peer-reviewed but not funded by a NHC member patient advocacy organization may also register. The National Health Council (NHC) developed this site with input from the National Institutes of Health (NIH), the nation''s medical research agency. has parent organization: National Institutes of Health nif-0000-03130 SCR_007790 2026-08-08 11:59:10 0
BigWig and BigBed
 
Resource Report
Resource Website
10+ mentions
BigWig and BigBed (RRID:SCR_007708) BigWig and BigBed software resource Allow the high-performance display of next-generation sequencing experiment results in the UCSC Genome Browser. is listed by: OMICtools
is related to: UCSC Genome Browser
is related to: bedGraphToBigWig
has parent organization: University of California at Santa Cruz; California; USA
OMICS_00626 SCR_007708 2026-08-08 11:59:01 43
HighSSR
 
Resource Report
Resource Website
1+ mentions
HighSSR (RRID:SCR_007949) HighSSR software resource Software that predicts microsatellites with Tandem Repeats Finder (TRF). is listed by: OMICtools
has parent organization: Google Code
PMID:22954626 OMICS_00107 SCR_007949 highssr - Microsatellites prediction and analysis with next generation sequencing data 2026-08-08 11:59:02 1
ADDA - Automatic Domain Decomposition Algorithm
 
Resource Report
Resource Website
10+ mentions
ADDA - Automatic Domain Decomposition Algorithm (RRID:SCR_007546) ADDA data or information resource, production service resource, data analysis service, database, analysis service resource, service resource This is a web interface for ADDA, an automatic algorithm for domain decomposition and clustering of all protein domain families. We use alignments derived from an all-on-all sequence comparison to define domains within protein sequences based on a global maximum likelihood model. ADDA is downloadable. There are three ways in which you can retrieve a protein sequence and its domains from ADDA. Sequences can be located using sequence identifiers and/or accession numbers, using a identical fragment lookup, or by running BLAST against all sequences in ADDA. ADDA is a protein sequence clustering algorithm. It takes a set of sequences and returns domain families. ADDA has two steps corresponding to the two aspects of the protein sequence clustering domain. First, ADDA splits protein sequences into domains. The idea behind ADDA is in principle the application of Occam''s razor; the goal is to describe the diversity of protein sequences with a minimal set of protein domains. The algorithm behind ADDA approximates this minimal set. In practice ADDA works by looking at where BLAST alignments are located on the sequence and splits the sequences, so that as few as possible alignments are cut by domain boundaries and that as many alignments as possible stretch over complete domains. Secondly, ADDA takes all the domains and then arranges them in a minimum spanning tree, where the similarity between two domains is determined by their relative overlap given a BLAST alignment. Each link in the tree is then checked by a pairwise profile-profile comparison and links below a threshold are removed. The remaining connected components are then taken to represent protein domain families. has parent organization: University of Helsinki; Helsinki; Finland PMID:12706730 nif-0000-02535 SCR_007546 Automatic Domain Decomposition Algorithm 2026-08-08 11:59:00 10
NMPDR
 
Resource Report
Resource Website
1+ mentions
NMPDR (RRID:SCR_007821) NMPDR data or information resource, production service resource, data analysis service, database, analysis service resource, service resource The National Microbial Pathogen Data Resource provides curated annotations in an environment for comparative analysis of genomes and biological subsystems, with an emphasis on the food-borne pathogens Campylobacter, Listeria, Staphylococcus, Streptococcus, and Vibrio; as well as the STD pathogens Chlamydiaceae, Haemophilus, Mycoplasma, Neisseria, Treponema, and Ureaplasma. This edition of the NMPDR includes 47 archaeal, 725 bacterial, and 29 eukaryal genomes with 3,257,100 genetic features, of which 1,338,895 are in FIGfams curated using 616 active subsystems. ''''''Notice to NMPDR Users'''''' - The NMPDR BRC contract ended in December 2009. At that time we ceased maintenance of the NMPDR web resource and data. Bacterial data from NMPDR has been transferred to PATRIC (http://www.patricbrc.org), a new consolidated BRC for all NIAID category A-C priority pathogenic bacteria. NMPDR was a collaboration among researchers from the Computation Institute of the University of Chicago, the Fellowship for Interpretation of Genomes (FIG), Argonne National Laboratory, and the National Center for Supercomputing Applications (NCSA) at the University of Illinois. has parent organization: University of Chicago; Illinois; USA NIAID contract HHSN266200400042C PMID:17145713 nif-0000-03193 http://www.nmpdr.org SCR_007821 NMPDR - National Microbial Pathogen Data Resource, National Microbial Pathogen Data Resource, NMPDR BRC, NMPDR Bioinformatics Resource Center 2026-08-08 11:58:54 3
Washington State University Pullman WA. Pharmacology and Toxicology
 
Resource Report
Resource Website
Washington State University Pullman WA. Pharmacology and Toxicology (RRID:SCR_007543) department portal, data or information resource, portal, organization portal The research-oriented program in pharmacology and toxicology prepares students for careers in independent research and teaching in pharmacology, toxicology and related areas.The research interests of the faculty are very broad and active areas of research include cancer biology, pharmacogenomics, pharmacokinetics, immuno-pharmacology and -toxicology and neuroscience. The diversity in faculty research interests provides students with a solid foundation in many areas of molecular and cellular pharmacology and toxicology and gives them a wide variety of research programs from which a dissertation proposal may be selected.
The curriculum provides exposure of students to virtually all areas of current research in molecular and cellular biochemistry, immunology, molecular biology, pharmacology and toxicology and formal course requirements are flexible to tailor programs to individual needs.Our graduates have been successfully placed in careers in universities and colleges, the pharmaceutical and biotech industries, and in federal and state agencies. The program awards Ph.D. and M.S. degrees.
nif-0000-02299 http://www.pharmacy.wsu.edu/PharmTox/ SCR_007543 WSU 2026-08-08 11:59:09 0
Gene Regulation Programs
 
Resource Report
Resource Website
50+ mentions
Gene Regulation Programs (RRID:SCR_007787) Gene Regulation Programs data or information resource, portal, software resource, topical portal In an effort to strongly support the collaborative nature of scientific research, BIOBASE offers access to their tools. Programs that are available through this portal are: * AliBaba 2.1: AliBaba2 is a program for predicting binding sites of transcription factor binding sites in an unknown DNA sequence. Therefore it uses the binding sites collected in TRANSFAC. AliBaba2 is currently the most specific tool for predicting sites. * Boxshade 3.3.1: Pretty Printing and Shading of Multiple-Alignment files. * ClustalW 1.8: ClustalW Multiple Sequence Alignment Program. * Dialign2.0: Multiple Sequence Alignment Program. * F-Match 1.0: F-MATCH is a program for identifying statistically overrepresented Transcription Factor Binding Sites (TFBS) in a set of sequences compared against a control set, assuming a binomial distribution of TFBS frequency. The program reads MATCH output files for the query and control sets. F-Match uses a library of mononucleotide weight matrices from TRANSFAC 6.0 * Match 1.0 Public: Match is designed for searching potential binding sites for transcription factors (TF binding sites) nucleotide sequences. MatchTM uses a library of mononucleotide weight matrices from TRANSFAC 6.0 * molwSearch 1.0: Search for transcription factors with a certain molecular weight. * P-Match 1.0: P-Match is a new tool for identifying transcription factor binding sites (TF binding sites) in DNA sequences. It combines pattern matching and weight matrix approaches thus providing higher accuracy of recognition than each of the methods alone. P-Match uses a library of mononucleotide weight matrices from TRANSFAC 6.0 along with the site alignments associated with these matrices. * Patch 1.0: Search for potential transcription factor binding sites in your own sequences with the pattern search program using TRANSFAC 6.0 public sites. * m2transfac 1.0: m2transfac is a PWM-PWM alignment interface for the TRANSFAC(R) database. For given user motifs, m2transfac reports all non-overlapping pairwise alignments to a TRANSFAC(R) matrix which satisfy a specified threshold. * MatrixCatch 2.7: The MatrixCatch tool is designed for searching potential composite elements (CEs) for transcription factors (TFs) in any DNA sequence, which may be of interest. MatrixCatch uses a library of CE matrix models, which were compiled on a basis of experimentally identified CEs collected in TRANSCOMPEL database and mononucleotide weight matrices for single TF-binding sites collected in TRANSFAC 6.0 public database. * Composite Module Analyst (CMA) 1.0: CMA reads output of Match program and applies a genetic algorithm in order to define promoter models based on the composition of transcription factor binding sites and their pairs. * PolyA Scan 0.000707: Scanning a Sequence for potential Polyadenylation Sites. * ReadSeq 2.0: ReadSeq reads and writes nucleic/protein sequences in various formats. * SignalScan: Analysis of DNA Sequences for known Eukaryotic Signals * SbBlast 1.0: Search Tool for Sequence Search in the S/MARt Binder Database. SbBlast makes use of the BLAST Sequence Similarity Search Tool - Version 2.0.13 (May-26-2000). * SnpFind 0.3: SNPFIND is a tool for searches in the Database of Single Nucleotide Polymorphisms. The search algorithm used for the database search is the BLAST algorithm. * TfBlast 0.1: Search Tool for Sequence Search in the TRANSFAC Factor Table. SbBlast makes use of the BLAST Sequence Similarity Search Tool - Version 2.0.13 (May-26-2000). has parent organization: BIOBASE Corporation BIOBASE nlx_143607 SCR_007787 gene-regulation.com: Programs 2026-08-08 11:59:01 73
University of Western Ontario London Ontario Canada Physiology and Pharmacology
 
Resource Report
Resource Website
University of Western Ontario London Ontario Canada Physiology and Pharmacology (RRID:SCR_007541) UWO Department of Physiology and Pharmacology department portal, data or information resource, portal, organization portal Research-based medical science department of physiology and pharmacology in the Schulich School of Medicine and Dentistry at the University of Western Ontario that focus on biological processes from the cellular-molecular level to the integrative-systemic level, and on the effects of drugs and environmental agents on these processes. Their areas of research excellence include the physiology and pharmacology of the cardiovascular, neural, reproductive, endocrine and musculoskeletal systems. Several faculty work in the area of developmental biology related to these organ systems. Faculty members in this Department are leaders in nationally-funded collaborative research programs studying skeletal / bone development and biology, heart and vascular biology, cell communication and gap junctions, neural control of vision and movement, and osteoarthritis and pain. Funding from several large infrastructure grants from both national and provincial governments has facilitated the development of state-of-the-art research laboratories and core facilities. physiology, pharmacology, toxicology has parent organization: Western University; Ontario; Canada nif-0000-02287 http://www.physpharm.med.uwo.ca/, http://www.uwo.ca/physpharm/ SCR_007541 2026-08-08 11:58:53 0
Computer-Based Patient Record Ontology
 
Resource Report
Resource Website
Computer-Based Patient Record Ontology (RRID:SCR_007540) CPRO ontology, data or information resource, controlled vocabulary A uniform core set of data elements (whose formal semantics are captured in OWL) for use in a Computer-Based Patient Record (CPR) owl is listed by: BioPortal nlx_157375 https://code.google.com/p/cpr-ontology/ SCR_007540 2026-08-08 11:59:09 0

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