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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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BonVision project Resource Report Resource Website |
BonVision project (RRID:SCR_021491) | data or information resource, portal, project portal | Project related to creating and controlling visual environments.Provided open source software package for creating and controlling visual environments was developed by University College London scientists. | Creating visual environments, controlling visual environments, Bonsai, 2D environment, 3D environments, OpenBehavior |
is listed by: OpenBehavior is related to: BonVision has parent organization: University College London; London; United Kingdom |
DOI:10.1101/2020.03.09.983775 | Free, Freely available | SCR_021491 | SciCrunch Registry | BonVision | 2026-11-07 12:01:48 | 0 | ||||||||
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Open Source Whisking Video Database portal Resource Report Resource Website |
Open Source Whisking Video Database portal (RRID:SCR_021404) | data or information resource, portal, project portal | Portal provides shared database of videos featuring juvenile and adult male rats and adult male mice exploring stationary objects.This dataset includes wide variety of experimental conditions including genetic, pharmacological, and sensory deprivation interventions to explore how active sensing behavior is modulated by different factors. Database of high speed videos of whisking behavior in freely moving rodents.Open source high speed infrared videography database to study principles of active sensing in freely navigating rodents. | High speed videos, whisking behavior, freely moving rodents, infrared videography database, active sensing, OpenBehavior |
is listed by: OpenBehavior is related to: Open Source Whisking Video Database |
DOI:10.1093/gigascience/giy134 | Free, Freely available | SCR_021404 | SciCrunch Registry | 2026-11-07 12:01:41 | 0 | |||||||||
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DeepFly3D Resource Report Resource Website 1+ mentions |
DeepFly3D (RRID:SCR_021402) | data processing software, image analysis software, software application, software resource | Software tool as PyTorch and PyQT5 implementation of 2D-3D tethered Drosophila pose estimation. Image annotation tool used for pose estimation and appendage tracking. Provides interface for pose estimation and to permit further correction of 2D pose estimates, which are automatically converted to 3D pose. | Image annotation, pose tracking, pose estimation, motor circuit, behavioral measure, accurate 3D pose estimation, OpenBehavior |
is listed by: OpenBehavior is related to: DeepFly3D project |
DOI:10.7554/elife.48571 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/deepfly3d/ | SCR_021402 | SciCrunch Registry | 2026-11-07 12:01:47 | 1 | ||||||||
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MedParse Resource Report Resource Website |
MedParse (RRID:SCR_021528) | data processing software, software application, software resource | Software tool to read MedPC data into Python and Matlab. MedPC code for saving precise times of behavioral events and MatLab and Python functions to convert MedPC data into time event codes. | Read MedPC data, Python, Matlab, behavioral events, time event codes, OpenBehavior |
is listed by: OpenBehavior is related to: MedParse project |
Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/medparse/ | SCR_021528 | SciCrunch Registry | 2026-11-07 12:01:55 | 0 | |||||||||
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Argus Resource Report Resource Website 1+ mentions |
Argus (RRID:SCR_021585) | data or information resource, portal, project portal, software resource | Portal provides software tool for analysis and quantification of both single and socially interacting zebrafish. Software data extraction and analysis tool built in open source R language for tracking zebrafish behavior. | Analysis, quantification, socially interacting zebrafish, OpenBehavior |
is listed by: OpenBehavior is listed by: SoftCite is related to: Argus |
DOI:10.3758/s13428-018-1083-y | Free, Freely available | SCR_021619 | SCR_021585 | SciCrunch Registry | 2026-11-07 12:01:48 | 1 | ||||||||
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MouseMove project Resource Report Resource Website |
MouseMove project (RRID:SCR_021581) | data or information resource, portal, project portal | Portal provides MouseMove software system used to analyze Open Field behavior of mice after experimental stroke to show reduced locomotor activity and to quantify laterality deficits. System is used in combination with open source program ImageJ and MTrack2 plugin to analyze pre recorded Open Field test video. System has two downloadable components, ImageJ macro and separate program with custom built MouseMove GUI. ImageJ is used to subtract background video from experiment and create image of animals total trajectory. MouseMove GUI then completes detailed analysis of movement patterns, measuring fractional time spent stationary, distance traveled, speed mean and various details of laterality. | Open Field behavior analysis, mice after experimental stroke, reduced locomotor activity, quantify laterality deficits, OpenBehavior |
is listed by: OpenBehavior is related to: MouseMove |
DOI:10.1038/srep16171 | Free, Freely available | SCR_021581 | SciCrunch Registry | MouseMove system | 2026-11-07 12:01:56 | 0 | ||||||||
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Automated Classification of Self-grooming in Mice project Resource Report Resource Website 1+ mentions |
Automated Classification of Self-grooming in Mice project (RRID:SCR_021597) | data or information resource, portal, project portal | Portal provides protocol that implements JAABA, open source machine learning based behavior detection system; motr, open-source mouse trajectory tracking software; and bonsai, open source system capable of streaming and recording video. Together they use these tools to process videos of mice performing grooming behaviors in variety of behavioral setups. | grooming behavior, behavior detection protocol, JAABA behavior detection system, motr mouse trajectory tracking software, bonsai streaming and recording video, OpenBehavior | is listed by: OpenBehavior | DOI:10.1016/j.jneumeth.2017.05.026 | Free, Freely available | SCR_021597 | SciCrunch Registry | Automated Classification of Self-grooming in Mice | 2026-11-07 12:01:42 | 1 | ||||||||
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Lightning Pose Resource Report Resource Website |
Lightning Pose (RRID:SCR_024480) | software resource, software toolkit | Software video centric package for direct video manipulation. Semi supervised animal pose estimation algorithm, Bayesian post processing approach and deep learning package. Improved animal pose estimation via semi-supervised learning, Bayesian ensembling, and cloud-native open-source tools. | OpenBehavior, animal pose estimation algorithm, Bayesian post processing approach, direct video manipulation, | is listed by: OpenBehavior | Gatsby Charitable Foundation ; Irma T Hirschl Trust ; NINDS K99NS128075; NINDS NS075023; NINDS U19NS123716; NSF ; Simons Foundation |
PMID:37162966 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/lightningpose/ | SCR_024480 | SciCrunch Registry | 2026-11-07 12:01:52 | 0 | |||||||
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Rasberry rat Resource Report Resource Website 1+ mentions |
Rasberry rat (RRID:SCR_023467) | software repository, software resource | Software Python platform for recording, converting, and uploading videos to cloud and for performing scheduled video recordings. Repository also includes wiki section with comprehensive guide to setting up Raspberry Pis for this purpose. Raspberry Pis are often cheaper than camcorder and can produce HD video. They are also equipped with infrared camera, making them ideal for recordings of animals that are active in low light conditions. | recording, converting, uploading, videos, video recordings, seting up and recording home cage videos, OpenBehavior, | is listed by: OpenBehavior | https://edspace.american.edu/openbehavior/project/raspberry_rat/, https://github.com/lapphe/raspberry_rat/wiki | SCR_023467 | SciCrunch Registry | Rasberry_rat | 2026-11-07 12:04:19 | 3 | |||||||||
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Anipose Resource Report Resource Website 1+ mentions |
Anipose (RRID:SCR_023041) | software resource, software toolkit | Software package for 3D pose estimation. Uses DeepLabCut for 2D tracking and uses triangulation methods to project pose estimations into three dimensions.Toolkit for robust markerless 3D pose estimation. | OpenBehavior, 3D pose estimation, project pose estimations into three dimensions, markerless 3D pose estimation |
uses: DeepLabCut is listed by: OpenBehavior is related to: DeepLabCut Project |
McKnight Foundation ; New York Stem Cell Foundation ; NINDS DP2NS105555; NINDS F31NS115477; NINDS R00 NS088193; NINDS R01NS102333; NINDS R01NS111479; NINDS U19NS104655; NINDS U19NS112959; Pew Charitable Trusts ; Searle Scholars Program ; Sloan Research Fellowship ; Washington Research Foundation |
PMID:34592148 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/?s=Anipose | SCR_023041 | SciCrunch Registry | 2026-11-07 12:04:01 | 4 | |||||||
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Mouse Behavioral Analysis Toolbox Resource Report Resource Website 1+ mentions |
Mouse Behavioral Analysis Toolbox (RRID:SCR_023291) | MouBeAT | software resource, software toolkit | Software package to analyze different behavioral tests in rodents semi-automatically. These tests include Open Field (OF), Elevated Plus Maze (EPM), Y-maze (YM) test and Morris Water Maze (MWM). | OpenBehavior, behavioral tests, behavioral tests analysis, tests in rodents |
uses: ImageJ is listed by: OpenBehavior |
European Regional Development Fund ; Ministry of Science and Innovation ; Spain |
PMID:30245618 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/moubeat/ | SCR_023291 | SciCrunch Registry | 2026-11-07 12:04:02 | 1 | ||||||
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Rtrack Resource Report Resource Website |
Rtrack (RRID:SCR_023025) | software resource, software toolkit | Software R package for analysis of paths from spatial tracking experiments such as Morris water maze and calculation of goal finding strategies. Used for in depth analysis of tracking coordinates from video. | OpenBehavior, process raw spatial tracking data, calculate behavioural strategies, spatial tracking experiments, Morris water maze |
is listed by: OpenBehavior is listed by: CRAN |
DOI:10.1101/2020.02.27.967372v1.full.pdf | Free, Available for download, Freely available | https://rupertoverall.net/Rtrack/, https://edspace.american.edu/openbehavior/?s=Rtrack | SCR_023025 | SciCrunch Registry | 2026-11-07 12:04:16 | 0 | ||||||||
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Stytra Resource Report Resource Website |
Stytra (RRID:SCR_021500) | software resource, software toolkit | Open source software Python package to control stimulation and track behaviour.Provides timed stimulus presentation, interfacing with external devices and simultaneous real time tracking of behavioral parameters such as position, orientation, tail and eye motion in both freely swimming and head restrained preparations. | Control stimulation, track behaviour, closed loop behavioral experiments, larval zebrafish, behavioral parameters, position, orientation, tail, eye motion, freely swimming, head restrained, DeepLabCut, OpenBehavior |
is listed by: OpenBehavior is related to: Stytra project |
DOI:10.1371/journal.pcbi.1006699 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/stytra/ | SCR_021500 | SciCrunch Registry | 2026-11-07 12:03:55 | 0 | ||||||||
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Worm Behavior Platform Resource Report Resource Website |
Worm Behavior Platform (RRID:SCR_021501) | software resource, software toolkit | Software tool as repository of documentation, software, and discussions to share worm tracking data and analysis routines.Open access repository for storing, accessing, and filtering data; interchange format for notating single or multi worm behavior; and file formats written in Python for feature extraction, review, and analysis. | Worm behavior data analysis, worm behavior data sharing, worm behavior data, Caenorhabditis elegans behavioral data, Worm tracker Commons Object Notation, OpenBehavior |
is listed by: OpenBehavior is related to: Worm Behavior Platform project |
DOI:10.1038/s41592-018-0112-1 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/worm-behavior-platform/ | SCR_021501 | SciCrunch Registry | Tracker Commons | 2026-11-07 12:04:10 | 0 | |||||||
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Behavioral Observation Research Interactive Software Resource Report Resource Website 10+ mentions |
Behavioral Observation Research Interactive Software (RRID:SCR_021509) | BORIS | software application, software resource, standalone software | Open source event logging software for video/audio coding and live observations.Multiplatform standalone program that allows user specific coding environment for computer based review of previously recorded videos or live observations. | Specific coding environment, computer based review, previously recorded videos review, live observations review, OpenBehavior |
is listed by: OpenBehavior is related to: Behavioral Observation Research Interactive Software project |
DOI:10.1111/2041-210x.12584 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/boris/ | SCR_021509 | SciCrunch Registry | 2026-11-07 12:04:02 | 10 | |||||||
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ArControl Resource Report Resource Website 1+ mentions |
ArControl (RRID:SCR_021605) | software application, software resource, standalone software | Software tool as Arduino UNO/Mega based, visual programming and real-time behavioral platform for neuroscience. It can run Go/No-Go, 2AFPC and Optogenetic stimulation tasks. Stand alone and intuitive Gaphical User Interface application.Part of ArControl system. | visual programming, real-time behavioral platform, control devices, deliver stimulation, monitor behavioral response, OpenBehavior |
is listed by: OpenBehavior is related to: ArControl project |
DOI:10.3389/fnbeh.2017.00244 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/arcontrol/ | SCR_021605 | SciCrunch Registry | 2026-11-07 12:04:10 | 1 | ||||||||
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BonVision Resource Report Resource Website 1+ mentions |
BonVision (RRID:SCR_021534) | software resource, software toolkit | Open source software package for creating and controlling visual environments.Software package for Bonsai which allows for control of 2D and 3D environments. | Creating visual environments, controlling visual environments, Bonsai, 2D environment, 3D environments, OpenBehavior |
is listed by: OpenBehavior is related to: BonVision project |
DOI:10.1101/2020.03.09.983775 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/bonvision/ | SCR_021534 | SciCrunch Registry | 2026-11-07 12:04:02 | 1 | ||||||||
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FaceSync Resource Report Resource Website |
FaceSync (RRID:SCR_021396) | software resource, software toolkit | Open source software Python toolbox which automatically synchronizes recorded facial expressions to videos and events such as social interactions.Framework for recording facial expressions with head mounted cameras. | Automatically synchronize videos, manually align audio, plot facial landmark movements, graph data, head mounted camera setup, 3D blueprints, recording facial expressions, OpenBehavior, Bio.Tools |
is listed by: OpenBehavior is related to: FaceSync project |
PMID:32185017 | Free, Available for download, Freely Available | biotools:FaceSync | https://edspace.american.edu/openbehavior/project/facesync/, https://bio.tools/FaceSync | SCR_021396 | SciCrunch Registry | 2026-11-07 12:04:02 | 0 | |||||||
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D-Track Resource Report Resource Website |
D-Track (RRID:SCR_021394) | software resource, software toolkit | Software package to track object in 3D based on 3D schematics of scene.Semi automatic 3D video tracking technique to analyse movements and routines of aquatic animals with application to captive dolphins. | Object tracking, track aquatic animals, dolphin tracker, 3D video tracking, analyse movements, OpenBehavior |
is listed by: OpenBehavior is related to: D-Track project |
DOI:10.1371/journal.pone.0201614 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/d-track/ | SCR_021394 | SciCrunch Registry | 2026-11-07 12:04:10 | 0 | ||||||||
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AutoPilot Resource Report Resource Website 1+ mentions |
AutoPilot (RRID:SCR_021518) | software resource, software toolkit | Software tool as open source Python framework for behavioral neuroscience that distributes experiments over networked swarms of Raspberry Pis. Toolkit of flexible modules to design experiments without rigid programming and API limitations. | Running behavioral experiments, automating behavioral experiments, Raspberry Pis, design experiments modules, OpenBehavior |
is listed by: OpenBehavior is related to: AutoPilot project |
DOI:10.1101/807693 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/autopilot/ | SCR_021518 | SciCrunch Registry | Autopilot | 2026-11-07 12:03:57 | 1 |
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