Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
GenoTan Resource Report Resource Website 1+ mentions |
GenoTan (RRID:SCR_007935) | GenoTan | software resource | A free software tool to identify length variation of microsatellites from short sequence reads. | bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools has parent organization: SourceForge |
PMID:24135263 | GNU General Public License, v3 | biotools:genotan | https://bio.tools/genotan | SCR_007935 | GenoTan - Genotyping of microsatellite loci | 2026-08-08 11:58:54 | 1 | |||||
|
University of Pennsylvania Medical Center Neuroscience Resource Report Resource Website |
University of Pennsylvania Medical Center Neuroscience (RRID:SCR_007978) | department portal, data or information resource, portal, organization portal | The Department of Neuroscience is located in the School of Medicine at the University of Pennsylvania. Founded in 1992 to recognize the growing importance of neuroscience as a scientific discipline, the Department laboratories pursue a wide variety of research interests reflecting the entire range of modern neuroscience. The Department lies at the heart of the campus-wide Mahoney Institute of Neurological Sciences, the first research organization to receive NIH funding for training in the neurosciences. | nif-0000-03991 | SCR_007978 | U Penn | 2026-08-08 11:59:11 | 0 | |||||||||||
|
VISTA Enhancer Browser Resource Report Resource Website 100+ mentions |
VISTA Enhancer Browser (RRID:SCR_007973) | VISTA Enhancer Browser | data or information resource, database, service resource, storage service resource, data repository | Resource for experimentally validated human and mouse noncoding fragments with gene enhancer activity as assessed in transgenic mice. Most of these noncoding elements were selected for testing based on their extreme conservation in other vertebrates or epigenomic evidence (ChIP-Seq) of putative enhancer marks. Central public database of experimentally validated human and mouse noncoding fragments with gene enhancer activity as assessed in transgenic mice. Users can retrieve elements near single genes of interest, search for enhancers that target reporter gene expression to particular tissue, or download entire collections of enhancers with defined tissue specificity or conservation depth. | human, noncoding fragment, mutant mouse strain, molecular neuroanatomy resource, image, telencephalon, development, genome, enhancer, dna fragment, embryo, embryonic mouse, brain, neural tube, eye, ear, heart, tail, limb, nose, cranial nerve, trigeminal, dorsal root ganglia, face, branchial arch, gene expression, annotation, vector, transgenic embryo, lacz reporter vector, lacz, biomaterial supply resource, in vivo, image collection, transcriptional enhancer, chip-seq, bio.tools, FASEB list |
is listed by: Debian is listed by: bio.tools is related to: NIF Data Federation is related to: One Mind Biospecimen Bank Listing is related to: OMICtools has parent organization: Lawrence Berkeley National Laboratory |
American Heart Association ; NIDCR ; NHLBI HL066681; NHGRI HG003988; DOE contract DE-AC02-05CH11231; NINDS NS062859; DOE DE020060 |
PMID:17130149 | Free, Freely available | nif-0000-03637, OMICS_01568, biotools:vista_enhancer_browser | https://bio.tools/vista_enhancer_browser | SCR_007973 | 2026-08-08 11:59:02 | 249 | |||||
|
RSEG Resource Report Resource Website 10+ mentions |
RSEG (RRID:SCR_007695) | RSEG | software resource | Software package aimed to analyze ChIP-Seq data, especially for identifying genomic regions and their boundaries marked by diffusive histone modification markers, such as H3K36me3 and H3K27me3. |
is listed by: OMICtools has parent organization: University of Southern California; Los Angeles; USA |
PMID:21325299 | Free | OMICS_00459 | SCR_007695 | 2026-08-08 11:59:10 | 14 | ||||||||
|
Buzsaki Lab Resource Report Resource Website 10+ mentions |
Buzsaki Lab (RRID:SCR_008020) | Buzsaki Lab | data or information resource, software resource, software application, data analysis software, laboratory portal, portal, organization portal, data processing software | Lab interested in understanding how neuronal circuitries of the brain support its cognitive capacities. Its goal is to provide rational, mechanistic explanations of cognitive functions at a descriptive level. In the lab''s view, the most promising area of cognitive faculties for scientific inquiry is memory, since it is a well-circumscribed term, can be studied in animals and substantial knowledge has accumulated on the molecular mechanisms of synaptic plasticity. Available software: * NeuroScope: NeuroScope can display local field potentials (EEG), neuronal spikes, behavioral events, as well as the position of the animal in the environment. It also features limited editing capabilities. * Klusters: Klusters is a powerful and easy-to-use cluster cutting application designed to help neurophysiologists sort action potentials from multiple neurons on groups of electrodes (e.g., tetrodes or multisite silicon probes). * KlustaKwik: KlustaKwik is a program for automatic cluster analysis, specifically designed to run fast on large data sets. * MATLAB m-files: A selection of MATLAB files developed in the lab., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | eeg, electrode, environment, funtion, animal, application, behavioral, brain, capacity, circuit, cluster, cognitive, hippocampal, hippocampus, laboratory, local field potential, mechanism, memory, molecular, neuron, neuronal, plasticity, research, scientific, spike, synaptic, tetrode |
has parent organization: Rutgers University; New Jersey; USA is parent organization of: NeuroScope |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-10182 | http://osiris.rutgers.edu/frontmid/indexmid.html | SCR_008020 | Buzsaki''s Lab | 2026-08-08 11:59:11 | 15 | ||||||
|
Soy Ontology Resource Report Resource Website |
Soy Ontology (RRID:SCR_007847) | SOY | ontology, data or information resource, controlled vocabulary | Growth, trait and development ontology for soybean | obo |
is listed by: BioPortal has parent organization: SoyBase |
nlx_157593 | SCR_007847 | 2026-08-08 11:58:54 | 0 | |||||||||
|
HPID - Human Protein Interaction database Resource Report Resource Website 1+ mentions |
HPID - Human Protein Interaction database (RRID:SCR_007724) | HPID | data or information resource, database, service resource, storage service resource, data repository | Database that provides human protein interaction information and integrated interaction and also finds proteins from databases that can potentially react with proteins submitted by users. The human protein interaction information was pre-computed by a statistical method from existing structural and experimental data, while the integrated human protein interactions are derived from BIND, DIP and HPRD. A score composed of three parts is assigned to the predicted interaction data, and those interactions with high scores were found reliable. HPID allows the user to use the protein IDs in EMBL, Ensembl, MIM, RefSeq, HPRD and NCBI to search protein interactions of interest. A set of web-based software tools has also been developed so that users can visualize and analyze protein interaction networks. | human protein, protein, interaction, protein superfamily, yeast, visualize, analyze, protein interaction network | has parent organization: Inha University; Incheon; South Korea | Ministry of Information and Communication of Korea IMT2000-C3-4 | PMID:15117749 | nif-0000-02984 | http://www.hpid.org | SCR_007724 | 2026-08-08 11:58:54 | 2 | ||||||
|
Alzheimer's Australia: Living with Dementia Resource Report Resource Website |
Alzheimer's Australia: Living with Dementia (RRID:SCR_008015) | data or information resource, narrative resource, training resource, topical portal, training material, service resource, portal, disease-related portal | A website which provides in-depth fact sheets on aspects of dementia and dementia care. It provides information on member organizations in each state, support and respite services as well as counseling and education available through Alzheimer's Australia. This organization's vision is for a society committed to the prevention of dementia, while valuing and supporting people living with dementia. Alzheimer's Australia manages a wide range of innovative National Programs which provide information, support, counseling, training and education to people with dementia, their families and carers as well as to professionals working in the dementia field. | education, events, family, alzheimers, counseling, dementia, healthcare, memory loss, services, short course, support | Department of Health Australian Government ; J.O. and J.R. Wicking Trust ; Pfizer Australia ; Hazel Hawke Research and Care Fund ; Bupa Care Services ; Australia and New Zealand Banking Group Limited ; Eli Lily ; Novartis Australia ; Workplace Giving Companies |
Public | nif-0000-10147 | SCR_008015 | Alzheimer's Australia | 2026-08-08 11:59:11 | 0 | ||||||||
|
Medical Research Council Harwell: An International Centre for Mouse Genetics Resource Report Resource Website 10+ mentions |
Medical Research Council Harwell: An International Centre for Mouse Genetics (RRID:SCR_008013) | MRC Harwell, Harwell | biomaterial supply resource, material resource, organism supplier | UK’s national facility for mouse genetics and use of mouse models for preclinical study of human disease.Offers services to researchers around the world. Services include free archiving of mouse lines to protect them for future use, distribution of mouse lines from the Archive, breeding and phenotyping of genetically altered mice, and genome engineering services to generate new mouse models.Offers archiving and distribution of mouse lines to safeguard germplasm collected from unique strains and make it readily available to the scientific community. | RIN, Resource Information Network, mouse genetics, mouse models, preclinical study, human disease, mouse lines, genetically altered mice, breeding and phenotyping, genome engineering services, RRID Community Authority |
is listed by: Resource Information Network is related to: University of Oxford; Oxford; United Kingdom works with: International Mouse Strain Resource |
MRC | nif-0000-09875 | SCR_008013 | Mary Lyon Centre at MRC Harwell | 2026-08-08 11:58:55 | 11 | |||||||
|
BIRD - Bio Info R and D Resource Report Resource Website 1+ mentions |
BIRD - Bio Info R and D (RRID:SCR_008010) | BIRD | data or information resource, portal, organization portal, topical portal | BIRD''s mission is to aid the progress of bioinformatics and promote creation of new biology, which has computational, deductive, predictive, and theoretical features. (most of this site is in Japanese) To carry out its responsibilities, BIRD: * Promotes appropriate development of bioinformatics research and development, such as what kinds of databases and analysis software should be developed and what kind of computer facilities are needed for that development. * Maintains the computer environment and network and functions as a funding agency to further promotion plans. * Develops basic databases: genome sequence database, protein 3D structure database, gene expression profile database, molecular interaction database, etc. * Conducts and coordinates integration, enhancement, and standardization of the basic databases. * Develops computing tools for analyzing various kinds of biological and experimental data, data mining from databases, computer simulation of living systems and so on. * Develops ontologies necessary for data and knowledge description of databases storing biological functions and integration of the basic databases. * Conducts and coordinates research and development of innovative and creative technologies and theories which move toward understanding life as an information system, especially approaches by collaboration of computer scientists and experimental scientists. * Provides computer facilities for developing databases and software and making them publicly available. * Sets up training courses for teaching utilization of databases and tools for novices in bioinformatics and sponsors scientific meetings. * Provides community space with high performance computing facilities where innovative ideas are cultivated by free discussion and "trial and error" with the computer in order to promote development of young scientists who will create new biological discoveries based on bioinfomatics and become leaders in the field. | data set | is listed by: 3DVC | nif-0000-09525 | SCR_008010 | Bio Info R and D, Bio Info RandD | 2026-08-08 11:59:11 | 2 | ||||||||
|
T1DBase Resource Report Resource Website 100+ mentions |
T1DBase (RRID:SCR_007959) | data or information resource, resource, database, service resource, storage service resource, data repository | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 26,2019. In October 2016, T1DBase has merged with its sister site ImmunoBase (https://immunobase.org). Documented on March 2020, ImmunoBase ownership has been transferred to Open Targets (https://www.opentargets.org). Results for all studies can be explored using Open Targets Genetics (https://genetics.opentargets.org). Database focused on genetics and genomics of type 1 diabetes susceptibility providing a curated and integrated set of datasets and tools, across multiple species, to support and promote research in this area. The current data scope includes annotated genomic sequences for suspected T1D susceptibility regions; genetic data; microarray data; and global datasets, generally from the literature, that are useful for genetics and systems biology studies. The site also includes software tools for analyzing the data. | genetics, beta cell, gene, variant, region, genomics, gene expression, genome-wide association study, data analysis service, bio.tools |
is used by: NIF Data Federation is used by: NIDDK Information Network (dkNET) is listed by: NIDDK Information Network (dkNET) is listed by: Debian is listed by: bio.tools is related to: dkCOIN has parent organization: University of Cambridge; Cambridge; United Kingdom |
Type 1 diabetes. Diabetes | Wellcome Trust ; NIDDK ; Juvenile Diabetes Research Foundation |
PMID:20937630 | THIS RESOURCE IS NO LONGER IN SERVICE. | nif-0000-03531, biotools:t1dbase | https://bio.tools/t1dbase | SCR_007959 | T1DBase - Type 1 Diabetes Database | 2026-08-08 11:59:10 | 147 | ||||
|
Healthcare Common Procedure Coding System Resource Report Resource Website |
Healthcare Common Procedure Coding System (RRID:SCR_007598) | HCPCS | ontology, data or information resource, controlled vocabulary | Ontology for the healthcare common procedure coding system. | umls | is listed by: BioPortal | nlx_157426 | SCR_007598 | 2026-08-08 11:58:53 | 0 | |||||||||
|
Congress of Neurological Surgeons Resource Report Resource Website 1+ mentions |
Congress of Neurological Surgeons (RRID:SCR_007993) | institution | A professional organization focused on advancing neurosurgery by providing members with the educational and career development opportunities. They have an annual meeting and offer CME opportunities. The Congress of Neurological Surgeons seeks to improve the quality of healthcare through: * The development of educational programs that convey knowledge, enhance self-directed learning and improve patient outcomes. * Advancing the science of medical education. * Promoting original inquiry and the exchange of clinical and scientific evidence. * Public advocacy for the enhancement of quality, safety and access to neurosurgical care. The Congress of Neurological Surgeons seeks to advance the profession of neurosurgery through: * Refining neurosurgical practice based on evidence. * Promoting volunteerism and leadership development within our specialty. * Development of programs to promote safety, quality and efficiency in practice for domestic and international members. |
is parent organization of: University of Neurosurgery Webinar Series is parent organization of: CNS NeuroWIki is parent organization of: Congress of Neurological Surgeons University of Neurosurgery is parent organization of: University of Neurosurgery Video Theatre |
Crossref funder ID: 100005653, Wikidata: Q5160882, ISNI: 0000 0001 1014 951X, nif-0000-06701, grid.453882.0 | https://ror.org/04ddd7237 | SCR_007993 | CNS | 2026-08-08 11:59:11 | 2 | |||||||||
|
PRECISE Resource Report Resource Website 50+ mentions |
PRECISE (RRID:SCR_007874) | PRECISE | database, data or information resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 12,2023. Database of interactions between amino acid residues of enzyme and its ligands. Provides summary of interactions between amino acid residues of enzyme and its various ligands including substrate and transition state analogues, cofactors, inhibitors, and products., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | enzyme, enzyme and enzyme nomenclature databases, function, align, amino acid, analogue, atom, chain, cofactor, complex, hydrogen bond, inhibitor, interaction, ligand, product, residue, sequence, structure, substrate, transition state | has parent organization: Boston University; Massachusetts; USA | NSF | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-21331, SCR_008230 | http://precise.bu.edu/precisedb/ | SCR_007874 | Predicted and Consensus Interaction Sites in Enzymes | 2026-08-08 11:58:54 | 53 | |||||
|
Bio2RDF atlas of post genomic knowledge Resource Report Resource Website 10+ mentions |
Bio2RDF atlas of post genomic knowledge (RRID:SCR_007991) | data or information resource, narrative resource, topical portal, portal, blog | This is a blog about post genomic knowledge. The website''s goal is to make public datasets from the bioinformatics community available in RDF format via standard SPARQL endpoints. | bioinformatic, community, dataset, genomic, knowledge, rdf | nif-0000-10166 | SCR_007991 | Bio2RDF | 2026-08-08 11:58:55 | 41 | ||||||||||
|
Drug Interaction Knowledge Base Ontology Resource Report Resource Website |
Drug Interaction Knowledge Base Ontology (RRID:SCR_007591) | DIKB | ontology, data or information resource, controlled vocabulary | An evidence taxonomy for pharmacologic studies that, when combined with a set of inclusion criteria, enable drug experts to specify what their confidence in a drug mechanism assertion would be if it were supported by a specific set of evidence. | owl | is listed by: BioPortal | PMID:19435613 | nlx_157392 | SCR_007591 | 2026-08-08 11:59:09 | 0 | ||||||||
|
VEGA Resource Report Resource Website 500+ mentions |
VEGA (RRID:SCR_007907) | VEGA | data or information resource, production service resource, data analysis service, database, analysis service resource, service resource | Central repository for high quality frequently updated manual annotation of vertebrate finished genome sequence. Human, mouse and zebrafish are in the process of being completely annotated, whereas for other species the annotation is only of specific genomic regions of particular biological interest. The majority of the annotation is from the HAVANA group at the Welcome Trust Sanger Institute. Users can BLAST, search for specific text, export, and download data. Genomes and details of the projects for each species are available through the homepages for human mouse and zebrafish. The website is built upon code from the EnsEMBL (http://www.ensembl.org) project. Some Ensembl features are not available in Vega. From the users point of view perhaps the most significant of these is MartView. However due to their inclusion in Ensembl, Vega human and mouse data can be queried using Ensembl MartView. Vega contains annotation of the human MHC region in eight haplotypes, and the LRC region in three haplotypes. Vega also contains annotation on the Insulin Dependent Diabetes (IDD) regions on non-reference assemblies for mouse. | human, mouse, zebrafish, gorilla, wallaby, pig, dog, vertebrate, genome, orfs, FASEB list |
is listed by: Sequencing of Idd regions in the NOD mouse genome is related to: Consensus CDS has parent organization: Wellcome Trust Sanger Institute; Hinxton; United Kingdom |
PMID:18003653 PMID:15975227 PMID:15608237 |
r3d100012575 | https://doi.org/10.17616/R3W77X | SCR_007907 | The Vertebrate Genome Annotation database (VEGA), Vertebrate Genome Annotation, Vertebrate Genome Annotation Database | 2026-08-08 11:59:02 | 765 | ||||||
|
Retroviral Tagged Cancer Gene Database Resource Report Resource Website 10+ mentions |
Retroviral Tagged Cancer Gene Database (RRID:SCR_007908) | RTCGD | database, data or information resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 12,2023. Database of high throughput insertional mutagenesis screening projects of retroviral and transposon insertional mutagenesis in mouse tumors. Information in the RTCGD is obtained from sequence comparison by using public databases UCSC genome mm9 browser. Data based on previous genome assembly mm8 is also available at RTCGD mm8. MCGP has developed three web search tools including Easy Search to query proviral integration sites using mouse gene symbol of gene name; Model Search to obtain RIS information based on tumor models and/or tumor types; Interaction Search to find gene-to-gene interaction. It displays the list of genes which reside in the same tumor to your gene of interest. | insertional mutagenesis screening, retroviral and transposon insertional mutagenesis, mouse tumors, |
has parent organization: NCI-Frederick has parent organization: National Cancer Institute |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-03429, SCR_008568, nif-0000-31455 | http://rtcgd.ncifcrf.gov/ | SCR_007908 | RTCGD - Retroviral Tagged Cancer Gene Database | 2026-08-08 11:59:10 | 11 | ||||||
|
R/TDTHAP Resource Report Resource Website 1+ mentions |
R/TDTHAP (RRID:SCR_007625) | software resource, software application | Software package for TDT with extended haplotypes in the R language. R is the public domain dialect of S. It should be possible to port this library to the commercial Splus product. The main problem would be translation of the help files. (entry from Genetic Analysis Software) | gene, genetic, genomic, r/splus | is listed by: Genetic Analysis Software | nlx_154676, nlx_154602, SCR_000851 | http://www-gene.cimr.cam.ac.uk/clayton/software/ | SCR_007625 | TDTHAP | 2026-08-08 11:59:10 | 1 | ||||||||
|
HilbertVis Resource Report Resource Website 1+ mentions |
HilbertVis (RRID:SCR_007862) | HilbertVis | software resource | Software tool that allows to display very long data vectors in a space-efficient manner, allowing the user to visually judge the large scale structure and distribution of features simultaneously with the rough shape and intensity of individual features. | bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools has parent organization: European Bioinformatics Institute |
DOI:10.1093/bioinformatics/btp152 | OMICS_00627, biotools:hilbertvis | https://bio.tools/hilbertvis, https://sources.debian.org/src/r-bioc-hilbertvis/ | SCR_007862 | 2026-08-08 11:59:10 | 4 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the RRID Resources search. From here you can search through a compilation of resources used by RRID and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that RRID has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on RRID then you can log in from here to get additional features in RRID such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into RRID you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
