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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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ontquery Resource Report Resource Website 1+ mentions |
ontquery (RRID:SCR_021659) | software resource | Software tool as framework querying ontology terms within SciCrunch and SciCrunch SciGraph endpoints. | Querying ontology terms, ontology terms, SciCrunch SciGraph endpoints, querying ontology | Free | https://github.com/tgbugs/ontquery | SCR_021659 | 2026-08-01 12:07:14 | 1 | ||||||||||
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McKinley: Cellometer Auto T4 Resource Report Resource Website 1+ mentions |
McKinley: Cellometer Auto T4 (RRID:SCR_021656) | instrument resource | System includes automated cell counter for trypan blue viability for cell lines and bright field imaging and pattern recognition software to quickly and accurately identify and count individual cells. Cell count, concentration, diameter, and % viability are automatically calculated and reported. | Automated cell counter, trypan blue cell viability, bright field imaging, pattern recognition, count individual cells, cell concentration count, cell diameter count, instrument, equipment, USEDit | is listed by: USEDit | Commercially available | Model_Number_Auto_T4 | SCR_021656 | Auto T4, Nexcellom Bioscience Cellometer Auto T4 Bright Field Cell Counter, Cellometer Auto T4 Bright Field Cell Counter | 2026-08-01 12:07:14 | 2 | ||||||||
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GE: Amersham Imager 600 Resource Report Resource Website 1+ mentions |
GE: Amersham Imager 600 (RRID:SCR_021853) | instrument resource | Amersham Imager 600 is CCD camera system that produces digitial images of samples in gels or membranes in three different modes: chemiluminescence, colorimetric and fluorescent image capture. Provides imaging system to capture and analyze protein and DNA sample gels and membranes in high resolution. | USEDit, chemiluminescence, colorimetric, fluorescent, image capture, digitial images | is listed by: USEDit | Commercially available | https://photos.labwrench.com/equipmentManuals/19468-6742.pdf | SCR_021853 | GE Healthcare Amersham Imager 600, Amersham Imager 600 | 2026-08-01 12:07:25 | 7 | ||||||||
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BorutaShap Resource Report Resource Website 1+ mentions |
BorutaShap (RRID:SCR_021696) | software resource | Software tool as wrapper feature selection method which combines both Boruta feature selection algorithm with shapley values. | Wrapper feature selection method, Boruta feature selection algorithm, shapley values | Free, Available for download, Freely available | https://github.com/Ekeany/Boruta-Shap | SCR_021696 | 2026-08-01 12:07:23 | 6 | ||||||||||
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LightGBM Resource Report Resource Website 10+ mentions |
LightGBM (RRID:SCR_021697) | software resource | Software tool as gradient boosting framework that uses tree based learning algorithms. Designed to be distributed and efficient with advantages:Faster training speed and higher efficiency;Lower memory usage;Better accuracy;Support of parallel, distributed, and GPU learning;Capable of handling large scale data. | Gradient boosting framework | Free, Available for download, Freely available | https://github.com/Microsoft/LightGBM/blob/master/docs/index.rst | SCR_021697 | 2026-08-01 12:07:16 | 14 | ||||||||||
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pyxDamerauLevenshtein Resource Report Resource Website 1+ mentions |
pyxDamerauLevenshtein (RRID:SCR_021858) | software resource | Software tool implements Damerau-Levenshtein (DL) edit distance algorithm for Python in Cython for high performance. | Damerau-Levenshtein, edit distance algorithm | Free, Available for download, Freely available | SCR_021858 | 2026-08-01 12:07:18 | 1 | |||||||||||
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NanoString: nCounter Analysis System Resource Report Resource Website 10+ mentions |
NanoString: nCounter Analysis System (RRID:SCR_021712) | nCounter | instrument resource | System includes hardware and software. Options include nCounter SPRINT,nCounter MAX or nCounter FLEX. Platform used for multiplex analysis of up to 800 RNA, DNA, or protein targets. System can be combined with GeoMx Digital Spatial Profiler (DSP) to enable high-plex, spatially-resolved RNA, and protein quantification. | Multiplex analysis, RNA analysis, DNA analysis, Protein analysis, NanoString Differential Expression, NanoString, analysis system, instrument, equipment, USEDit, ABRF | is listed by: USEDit | Commercially available | SCR_021712 | nCounter Analysis System, Bruker nCounter Analysis System | 2026-08-01 12:07:16 | 29 | ||||||||
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YAML Resource Report Resource Website 10+ mentions |
YAML (RRID:SCR_021710) | software resource | YAML is a human friendly data serialization language for all programming languages. Unicode based data serialization language designed around common native data types of agile programming languages. Useful for programming needs ranging from configuration files to Internet messaging to object persistence to data auditing. | Data serialization language, common native data types, agile programming languages, configuration files, Internet messaging, object persistence, data auditing | Free, Freely available | https://yaml.org/spec/1.2.1/ | SCR_021710 | YAML 1.2 | 2026-08-01 12:07:23 | 17 | |||||||||
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TriKinetics: Drosophila Activity Monitoring System Resource Report Resource Website 1+ mentions |
TriKinetics: Drosophila Activity Monitoring System (RRID:SCR_021798) | instrument resource | System from TriKinetics for monitoring Drosophila activity. Includes hardware and DAMSystem3 Software for data acquision and DAMFileScan Software for scanning data for errors. Applied to behavioral activity experiments, including sleep deprivation analyses and general studies of hypoactivity and hyperactivity. | monitoring Drosophila activity, behavioral activity experiment, behavioral activity, activity monitoring |
is related to: TriKinetics DAMSystem3 Software is related to: Trikinetics DAM FileScan |
DOI:10.1101/pdb.prot5518 | Restricted | SCR_021798 | Drosophila Activity Monitoring System, DAM, DAM System, Drosophila Activity Monitor | 2026-08-01 12:07:24 | 9 | ||||||||
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Trikinetics DAM FileScan Resource Report Resource Website 1+ mentions |
Trikinetics DAM FileScan (RRID:SCR_021817) | software resource | Software tool used in Drosophila Activity Monitor system to scann data for errors. Also allows user to extract data from monitor files and bin data in different lengths. | scann data for errors, Drosophila Activity Monitor system, extract data | is related to: TriKinetics: Drosophila Activity Monitoring System | SCR_021817 | DAM FileScan | 2026-08-01 12:07:18 | 1 | ||||||||||
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Max Planck Institute for Psycholinguistics; Nijmegen; Netherlands Resource Report Resource Website 1+ mentions |
Max Planck Institute for Psycholinguistics; Nijmegen; Netherlands (RRID:SCR_021706) | institution | Institute is entirely devoted to psycholinguistics – the study of how we produce and understand language, and how we acquire these skills as first or second language learners. The only institution in the world entirely dedicated to psycholinguistics, and is also one of only three among total of 90 within the Max Planck Society to be located outside Germany. |
has parent organization: Max-Planck-Gesellschaft is parent organization of: ELAN |
SCR_021706 | 2026-08-01 12:07:23 | 1 | ||||||||||||
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ELAN Resource Report Resource Website 10+ mentions |
ELAN (RRID:SCR_021705) | software resource | Software annotation tool for audio and video recordings. Annotation can be sentence, word or gloss, comment, translation or description of any feature observed in media. Annotations can be created on multiple layers. Tiers can be hierarchically interconnected. Annotation can either be time-aligned to media or it can refer to other existing annotations. Content of annotations consists of Unicode text and annotation documents are stored in XML format (EAF). | Annotation tool, audio recordings, video recordings, Unicode text, annotation documents, documents stored, XML format | has parent organization: Max Planck Institute for Psycholinguistics; Nijmegen; Netherlands | Free, Available for download, Freely available | SCR_021705 | 2026-08-01 12:07:15 | 19 | ||||||||||
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Seq-N-Slide Resource Report Resource Website 10+ mentions |
Seq-N-Slide (RRID:SCR_021752) | software resource | Set of automated workflows for common sequencing based (Illumina) protocols, such as RNA-seq, ChIP-seq, ATAC-seq, WGBS/RRBS methylation, whole genome/exome/targeted variant detection, and contaminant screening. Sequencing data analysis pipelines. | Sequencing data analysis pipelines | Free, Available for download, Freely available | SCR_021752 | 2026-08-01 12:07:24 | 16 | |||||||||||
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Halvade Somatic Resource Report Resource Website 1+ mentions |
Halvade Somatic (RRID:SCR_021771) | software resource | Software implements germline and somatic variant calling pipelines based on best practices pipelines from Broad Institute using Spark framework. Produces VCF output file which contains single nucleotide polymorphisms (SNPs) and short insertions and deletions (indels) when supported by used tools. Program requires Spark on either local cluster with one or more nodes, Amazon EMR cluster or Docker image to run. | somatic variant, GATK, Halvade, VCF output file, germline, somatic variant calling, Spark framework | uses: GATK | Free, Available for download, Freely available | SCR_021771 | Halvade for Spark | 2026-08-01 12:07:24 | 1 | |||||||||
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Online Kappa Calculator Resource Report Resource Website 1+ mentions |
Online Kappa Calculator (RRID:SCR_021770) | software resource | Software tool can be used to calculate kappa, chance adjusted measure of agreement, for any number of cases, categories, or raters. | Calculator, calculate kappa, chance adjusted measure of agreement, number of cases, number of categories, number of | Free, Freely available | SCR_021770 | 2026-08-01 12:07:16 | 8 | |||||||||||
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CellScale: MicroTester G2 system Resource Report Resource Website 1+ mentions |
CellScale: MicroTester G2 system (RRID:SCR_022034) | instrument resource | System includes MicroTester G2 device and software. MicroTester G2 is mechanical test device that can be used to test properties of variety of tissues and materials. Main components of device are load application microbeam, actuators, imaging system, and fluid bath/test chamber. MicroTester G2 software is divided into two modules: data collection module and review and analysis module. | instrument, equipment, USEDit, CellScale, mechanical test device, test properties, tissues, materials | is listed by: USEDit | Restricted | https://www.cellscale.com/downloads2/MicroTester%20User%20ManualG2.pdf | SCR_022034 | SquisherJoy | 2026-08-01 12:07:28 | 3 | ||||||||
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Shahid Sadoughi University of Medical Sciences; Yazd; Iran Resource Report Resource Website 1+ mentions |
Shahid Sadoughi University of Medical Sciences; Yazd; Iran (RRID:SCR_022031) | university | Public university located in center of Iran in World Heritage city of Yazd. | SCR_022031 | Shahid Sadoughi University of Medical Sciences | 2026-08-01 12:07:21 | 1 | ||||||||||||
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CoolLED: pE-300ultra Resource Report Resource Website 1+ mentions |
CoolLED: pE-300ultra (RRID:SCR_021972) | instrument resource | Highly controllable fluorescence microscopy Illumination System which offers broad spectrum LED illumination for imaging most common fluorophores. System offers precise control over wavelength irradiance and shuttering. Used for LED microscope lighting. | CoolLED, LED microscope lighting, LED illumination, imaging, fluorophores, control over wavelength irradiance and shuttering, instrument, equipment, USEDit | is listed by: USEDit | Restricted | , Model_Number_pE-300ultra | SCR_021972 | 2026-08-01 12:07:20 | 3 | |||||||||
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ntCard Resource Report Resource Website 1+ mentions |
ntCard (RRID:SCR_022010) | software resource | Software tool for estimating k-mer coverage histogram of genomics data. Streaming algorithm for estimating frequencies of k-mers in genomics datasets. | K-mer, estimating k-mer coverage histogram, genomics data, estimating frequencies of k-mers | Genome Canada ; Genome British Columbia ; British Columbia Cancer Foundation ; NHGRI R01 HG007182 |
DOI:10.1093/bioinformatics/btw832 | Free, Available for download, Freely available | https://github.com/bcgsc/ntCard | SCR_022010 | 2026-08-01 12:07:27 | 1 | ||||||||
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Horiba: Geno Grinder 2010 High-throughput tissue homogenizer Resource Report Resource Website 1+ mentions |
Horiba: Geno Grinder 2010 High-throughput tissue homogenizer (RRID:SCR_020071) | instrument resource | High throughput plant and tissue homogenizer with adjustable clamp that accommodates variety of formats ranging from deep well titer plates to centrifuge tubes. Designed for rapid cell disruption, lysis and tissue homogenization while preserving temperature sensitive samples. | Horiba, High-throughput tissue homogenizer, Instrument, Resource Equipment, Equipment, USEDit, | Commercially available | Model_Number_2010 | SCR_020071 | 2026-08-01 12:06:50 | 2 |
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