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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
http://www.src.riken.go.jp/english/project/person/index.html
Not yet vetted by NIF curator
Proper citation: Biobank Japan (RRID:SCR_010629) Copy
http://genomics.senescence.info/genes/
Collection of annotated and manually curated data of genes related to aging divided into genes related to longevity and/or aging in model organisms (yeast, worms, flies, mice, etc.) and aging related human genes.
Proper citation: GenAge (RRID:SCR_010223) Copy
http://mitointeractome.kobic.kr/
Database that gathers data on interactions in the mitochondrial proteome that has been used to construct a network for the aging process in humans and to identify interactions that influence this process, since mitochondria is a major source of cellular reactive oxygen species that accumulate during aging. It will: # aid in increasing our understanding of the molecular functions and interaction networks of mitochondrial proteins, # help in identifying new target proteins for experimental research using predicted protein-protein interaction information, and # help in identifying biomarkers for diagnosis and new molecular targets for drug development related to mitochondria. How is MitoInteractome different? * Provides protein-protein interaction information with graphical display. * Applies newly added new mitochondrial protein information by using BLAST incorporated in Mitointeractome * Shows correlation of mutation with their impact * Provides specific pathway information to aid study of their impact * Contains SNP Information
Proper citation: MitoInteractome (RRID:SCR_010225) Copy
http://eng.sheba.co.il/Sheba_Hospitals/Acute_Care_Hospital/Laboratory/Tissue_Bank/
Not yet vetted by NIF curator
Proper citation: Sheba Medical Center Tissue Bank (RRID:SCR_010588) Copy
http://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000674.v1.p1
Human genetics data from an immense (78,000) and ethnically diverse population available for secondary analysis to qualified researchers through the database of Genotypes and Phenotypes (dbGaP). It offers the opportunity to identify potential genetic risks and influences on a broad range of health conditions, particularly those related to aging. The GERA cohort is part of the Research Program on Genes, Environment, and Health (RPGEH), which includes more than 430,000 adult members of the Kaiser Permanente Northern California system. Data from this larger cohort include electronic medical records, behavioral and demographic information from surveys, and saliva samples from 200,000 participants obtained with informed consent for genomic and other analyses. The RPGEH database was made possible largely through early support from the Robert Wood Johnson Foundation to accelerate such health research. The genetic information in the GERA cohort translates into more than 55 billion bits of genetic data. Using newly developed techniques, the researchers conducted genome-wide scans to rapidly identify single nucleotide polymorphisms (SNPs) in the genomes of the people in the GERA cohort. These data will form the basis of genome-wide association studies (GWAS) that can look at hundreds of thousands to millions of SNPs at the same time. The RPGEH then combined the genetic data with information derived from Kaiser Permanente''s comprehensive longitudinal electronic medical records, as well as extensive survey data on participants'' health habits and backgrounds, providing researchers with an unparalleled research resource. As information is added to the Kaiser-UCSF database, the dbGaP database will also be updated.
Proper citation: Resource for Genetic Epidemiology Research on Adult Health and Aging (RRID:SCR_010472) Copy
http://www.diffusion-imaging.com/
Blog written by Do Tromp and Samuel Hurley (University of Wisconsin, Madison) that intends to show what Diffusion Tensor Imaging (DTI) entails and give a comprehensive overview of available software, analyzing methods and research possibilities. Diffusion-imaging.com invites guest writers to contribute to this website.
Proper citation: DTI Blog (RRID:SCR_009028) Copy
https://sites.google.com/site/dublinbrainbank/home
A biomaterial supply resource that collects and distributes human brain tissue samples. The Dublin Brain Bank is a collaboration between the Neuropathology Department of Beaumont Hospital and the Royal College of Surgeons in Ireland. Investigators interested in applying for tissue samples need to complete tissue requisition forms and provide a record of the research groups'' ethical approval.
Proper citation: Dublin Brain Bank (RRID:SCR_010597) Copy
A commercial orthobiologics company whose main goal is to improve patient quality of life using the science of human biology to advance solutions for spine, orthopedics, and sports medicine.
Proper citation: ISTO Technologies, Inc. (RRID:SCR_010631) Copy
http://www.newlifestemcell.com/about/seoul_01.asp
THIS RESOURCE IS NO LONGER IN SERVICE, documented August 22, 2016. An umbilical cord blood bank located in Seoul, South Korea.
Proper citation: Seoul Cord Blood Bank (RRID:SCR_010514) Copy
A contract research service to the pharmaceutical industry, focusing on the use of fresh human tissues to predict drug activity prior to clinical trials. Biopta''s expertise in all areas of human tissue research including sourcing, handling and experimenting on human tissue allows us to act as your Human Tissue Research Department. Biopta has developed an extensive network of tissue collaborators and is accredited as a Research Tissue Bank. It manages procurement, ethics and logistics for human tissue research projects.
Proper citation: Biopta (RRID:SCR_010515) Copy
A biorepository of human biological material from healthy and diseased populations with a special focus on subjects with Alzheimer's disease, multiple sclerosis, Parkinson's disease and other neurological disorders. Data is collected longitudinally. PrecisionMed aims to facilitate research in genetics, drug discovery, biomarker research and molecular diagnostics. Materials collected include DNA, RNA, plasma and cerebrospinal fluid, among others.
Proper citation: PrecisionMed (RRID:SCR_010486) Copy
http://diana.imis.athena-innovation.gr/DianaTools/index.php?r=lncBase/index
Database that hosts elaborated information for both predicted and experimentally verified, miRNA-lncRNA interactions. The database consists of two distinct modules. The Experimental Module contains detailed information for more than 5,000 interactions, between 2,958 lncRNAs and 120 miRNAs, ranging from miRNA and lncRNA related facts to information specific to their interaction, the experimental validation methodologies and their outcomes. The Prediction Module, which is based on the latest version of DIANA-microT target prediction algorithm (DIANA-microT-CDS), contains detailed information for more than 10 million interactions, between 56,097 lncRNAs and 3,078 miRNAs, ranging from miRNA and lncRNA related details to specific information regarding their interaction sites, graphical representation of their binding and the predicted score. This module exhibits a unique feature for searching the database. Users are able to add genomic locations to their queries thus browsing every miRNA-lncRNA interaction that has at least one MRE located inside the queried locus.
Proper citation: DIANA-LncBase (RRID:SCR_010840) Copy
Database serving as a tool for microRNA target prediction. The HOCTAR procedure is based on the integration of expression profiling and sequence-based miRNA target recognition softwares. HOCTAR database (db) is the first and unique database to use transcriptomic data to score putative miRNA targets looking at the expression behaviour of their host genes, and it includes and re-analyzes all miRNA target predictions generated by softwares such as miRanda, TargetScan and PicTar. The HOCTARdb contains the prediction target lists for 290 human intragenic miRNAs and also provides tentative assignments of miRNA function based on Gene Ontology analyses of their predicted targets. There are two ways to interrogate HOCTARdb: (i) by selecting a miRNA using either an alphabetically sorted pull-down menu in the microRNA query, or (ii) by typing a target gene symbol (HUGO Gene Name-approved) in the Target Gene Name query.
Proper citation: HOCTAR (RRID:SCR_010842) Copy
http://www.alberthealthservices.ca
Commercial tissue bank focused on human tissues.
Proper citation: Comprehensive Tissue Centre (RRID:SCR_010689) Copy
http://www.cbs.dtu.dk/services/HMMgene/
Data analysis service for prediction of vertebrate and C. elegans genes.
Proper citation: HMMgene (RRID:SCR_011933) Copy
http://www.physionet.org/pn3/mghdb/
A database of 250 recordings of 3-lead ECGs, ABP, PAP, CVP, respiration, and airway CO2 signals from patients in critical care units; some recordings include intra-cranial, left atrial, ventricular and intra-aortic pressure waveforms.
Proper citation: MGH/MF Waveform Database (RRID:SCR_010737) Copy
http://www.stemlife.com/international/stem_cell/index.html
Not yet vetted by NIF curator
Proper citation: StemLife Stem Cell Bank (RRID:SCR_010735) Copy
http://www.genomicus.biologie.ens.fr/genomicus-72.01/cgi-bin/search.pl
A genome browser that enables users to navigate in genomes in several dimensions: linearly along chromosome axes, transversaly across different species, and chronologicaly along evolutionary time.
Proper citation: Genomicus (RRID:SCR_011791) Copy
Tissue bank that specifically provides human tissue and cell samples for research purposes. It offers PBMCs, whole blood, solid tumor tissues, circulating tumor cells, and a variety of other bio-specimens.
Proper citation: Conversant Biologics Inc. (RRID:SCR_010675) Copy
http://www.viccancerbiobank.org.au/
Not yet vetted by NIF curator
Proper citation: Victorian Cancer Care Biobank (RRID:SCR_010677) Copy
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