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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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ECLIPSE Resource Report Resource Website 100+ mentions |
ECLIPSE (RRID:SCR_013130) | software resource, software application | A set of three programs, preproc, eclipse2 and eclipse3 which analyze genetic marker data for genotypic errors and pedigree errors. Using a single preprocessing program (preproc), eclipse2 analyzes data on pairs of individuals, and eclise3 analyzes data jointly on trios. (entry from Genetic Analysis Software) | gene, genetic, genomic, c++, tested on, unix, (compaq tru64 v5.0a), bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
nlx_154290, biotools:eclipse | https://bio.tools/eclipse | SCR_013130 | Error Correcting Likelihoods In Pedigree Structure Estimation. PANGAEA | 2026-08-07 09:27:51 | 124 | ||||||||
|
GRR Resource Report Resource Website |
GRR (RRID:SCR_013496) | GRR | software resource, software application | A graphical tool designed for detection of errors in relationship specification in general pedigrees by use of genome scan marker data. (entry from Genetic Analysis Software) | gene, genetic, genomic, c++, ms-windows | is listed by: Genetic Analysis Software | nlx_154365 | SCR_013496 | Graphical Representation of Relationships | 2026-08-07 09:27:53 | 0 | ||||||||
|
PEDFIDDLER Resource Report Resource Website |
PEDFIDDLER (RRID:SCR_013376) | PEDFIDDLER | software resource, software application | Software suite of six programs that can be used as a stand-alone extension of the pedigree drawing facilities found in the publicly available version of PEDPACK. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, c++, unix, (osf1, and solaris 2.7, alphalinux), ms-windows, (xp home/win32/win95), linux | is listed by: Genetic Analysis Software | nlx_154517 | SCR_013376 | PEDPACK in PANGAEA | 2026-08-07 09:27:52 | 0 | ||||||||
|
VG Resource Report Resource Website 1+ mentions |
VG (RRID:SCR_013378) | VG | software resource, software application | Software program that presents complete raw datasets of individuals'' genotype data using a display format with samples as rows and polymorphisms as columns. The color code is: (1) blue: homozygous genotype for the common allele; (2) red: heterozygous genotype; (3) yellow: homozygous genotype for the rare allele; and (4) grey: missing data (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154688 | SCR_013378 | Visual Genotype | 2026-08-07 09:27:54 | 3 | ||||||||
|
TAGIMPUTE Resource Report Resource Website |
TAGIMPUTE (RRID:SCR_013338) | software resource, software application | A command-line program for the imputation of untyped SNPs. tagIMPUTE is based on a few flanking SNPs that can optimally predict the SNP under imputation. (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154670 | SCR_013338 | TAGging-snp based IMPUTATE | 2026-08-07 09:27:51 | 0 | |||||||||
|
SNP HITLINK Resource Report Resource Website |
SNP HITLINK (RRID:SCR_013340) | SNP HITLINK | software resource, software application | Software program providing a useful pipeline to directly connect SNP data and linkage analysis program. SNP HiTLink currently supports the data from SNP chips provided by Affymetrix (Mapping 100k/500k array set, Genome-Wide Human SNP array 5.0/6.0) and Illumina (recently supported), carrying out typical linkage analysis programs of MLINK (FASTLINK/ LINKAGE package), Superlink, Merlin and Allegro. (entry from Genetic Analysis Software) | gene, genetic, genomic, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
nlx_154644, biotools:snp_hitlink | https://bio.tools/snp_hitlink | SCR_013340 | SNP HIgh-Throughput LINKage analysis system | 2026-08-07 09:27:47 | 0 | |||||||
|
SGS Resource Report Resource Website |
SGS (RRID:SCR_013460) | SGS | software resource, software application | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, visualbasic, ms-windows, (95/98/00/nt) | is listed by: Genetic Analysis Software | nlx_154054 | SCR_013460 | 2026-08-07 09:27:55 | 0 | |||||||||
|
MCLEEPS Resource Report Resource Website |
MCLEEPS (RRID:SCR_013062) | software resource, software application | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, c++, unix, macos | is listed by: Genetic Analysis Software | nlx_154469 | SCR_013062 | Monte Carlo Likelihood Estimation of Effective Population Size PANGAEA | 2026-08-07 09:27:50 | 0 | |||||||||
|
AUTOSCAN Resource Report Resource Website 10+ mentions |
AUTOSCAN (RRID:SCR_013510) | AUTOSCAN | software resource, software application | A helper program to automate the tedious process of the creation of input files from genotype data of genome-wide scans (entry from Genetic Analysis Software) | gene, genetic, genomic, c and unix-shell (bourne), unix, (solaris/dec-unix) | is listed by: Genetic Analysis Software | nlx_154235 | SCR_013510 | 2026-08-07 09:27:48 | 20 | |||||||||
|
eXpression2Kinases Resource Report Resource Website 1+ mentions |
eXpression2Kinases (RRID:SCR_016307) | X2K | software resource, software application | Software tool to produce inferred networks of transcription factors, proteins, and kinases predicted to regulate the expression of the inputted gene list by combining transcription factor enrichment analysis, protein-protein interaction network expansion, with kinase enrichment analysis. It provides the results as tables and interactive vector graphic figures. | inferred, network, transcription, factor, protein, kinase, regulate, expression, gene, analysis, combine, bio.tools |
is listed by: Debian is listed by: bio.tools |
NIGMS P50 GM071558; NIDDK R01 DK088541; NLM RC2 LM010994; NIDDK P01 DK056492; NIDDK RC4DK090860; NCRR KL2 RR029885 |
PMID:22080467 | Open source, Free, Freely available, Available for download | biotools:x2k | https://bio.tools/x2k, http://www.maayanlab.net/X2K/ | SCR_016307 | eXpression2Kinases, X2K | 2026-08-07 09:28:30 | 6 | ||||
|
CIBERSORT Resource Report Resource Website 1000+ mentions |
CIBERSORT (RRID:SCR_016955) | software resource, data analytics software, software application | Software tool to provide an estimation of the abundances of member cell types in a mixed cell population, using gene expression data. Used for characterizing cell composition of complex tissues from their gene expression profiles, large scale analysis of RNA mixtures for cellular biomarkers and therapeutic targets. | estimation, abundance, cell, type, mixed, population, gene, expression, data, tissue, complex, analysis, RNA, biomarker, therapeutic, target, bio.tools |
is listed by: Debian is listed by: bio.tools has parent organization: Stanford University; Stanford; California |
Doris Duke Charitable Foundation ; Damon Runyon Cancer Research Foundation ; B&J Cardan Oncology Research Fund ; Ludwig Institute for Cancer Research ; NCI U01 CA154969; NIAID U19 AI090019; NCI T32 CA09302; US Department of Defense ; Siebel Stem Cell Institute ; Thomas and Stacey Siebel Foundation |
PMID:25822800 | Not freely available for download or distribution, Available for non commercial users, Registration required | biotools:CIbERSORt | https://bio.tools/CIBERSORT | SCR_016955 | 2026-08-07 09:28:42 | 1908 | ||||||
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Mutant Mouse Resource and Research Center - Jackson Laboratory Resource Report Resource Website 10+ mentions |
Mutant Mouse Resource and Research Center - Jackson Laboratory (RRID:SCR_016446) | MMRRC JAX, JAX MMRRC, JAX MMR | biomaterial supply resource, material resource | Center for mutant mouse research and distribution. The objectives of the JAX MMRRC are to: identify and evaluate biomedically-significant mice, import/acquire and archive mouse strains, distribute mouse strains, and operate a control program to ensure genetic stability. | mouse, mutation, clinical, research, biomedicine, genetics, gene, strain | is organization facet of: Mutant Mouse Resource and Research Center | NIH Office of the Director U42 OD010921 | SCR_016446 | JAX Mutant Mouse Resource and Research Center, Mutant Mouse Resource and Research Center - JAX, Jackson Laboratory MMRRC, Jackson Laboratory Mutant Mouse Resource and Research Center | 2026-08-07 09:28:37 | 23 | ||||||||
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University at Albany Center for Functional Genomics DNA Microarray Core Facility Resource Report Resource Website |
University at Albany Center for Functional Genomics DNA Microarray Core Facility (RRID:SCR_012502) | UAlbany CFG DNA Microarray Core Facility | core facility, access service resource, service resource | Core provides microarray services for Affymetrix GeneChip arrays, Agilent microarrays, NimbleGen microarrays and custom-produced spotted cDNA microarrays. Projects developed through DNA Microarray Center have made use of arrays from variety of genomes, eukaryotic, prokaryotic, and plant. Core services includes RNA/DNA isolation, gene expression, miRNA, Chip-chip, Rip-chip and DNA methylation services. Provides bioinformatics tools for further analysis of results of expression experiments. | DNA, microarray, functional, genomics, RNA, isolation, gene, expression, Chip-chip, Rip-chip, methylation, experiment, analysis |
is listed by: ScienceExchange has parent organization: University at Albany Center for Functional Genomics |
Restricted | SciEx_30 | SCR_012502 | CFG, University at Albany DNA Microarray Core Facility, University at Albany, UAlbany, Functional Genomics, Center for Functional Genomics, DNA Microarray | 2026-08-07 09:27:39 | 0 | |||||||
|
Salk Institute Gene Transfer Targeting and Therapeutics Viral Vector Core Facility Resource Report Resource Website 10+ mentions |
Salk Institute Gene Transfer Targeting and Therapeutics Viral Vector Core Facility (RRID:SCR_014847) | GT3 | core facility, access service resource, service resource | Core facility that provides consultation on the use of viral vector technologies as well as custom design and production services for multiple vector types. The GT3 facilitates the use of these research tools by Salk researchers and others across diverse fields of study such as systems neuroscience, stem cell biology, metabolism, ageing, cancer biology and gene therapy. The GT3 core is a designated Cancer Center Council (C3) core facility. Cancer Center members from participating C3 institutes have preferential rates. | core facility, gene, vector, viral vector, manipulation, gene therapy, cancer, stem cell |
is listed by: ABRF CoreMarketplace has parent organization: Salk Institute for Biological Studies |
NINDS R24 Core Grant ; NEI ; Salk Institute GT3 Core Facility ; NCI CCSG P30 014195; NINDS R24NS092943 |
Restricted | ABRF_1642 | https://coremarketplace.org/?FacilityID=1642&citation=1 | SCR_014847 | , Salk Institute Gene Transfer Targeting and Therapeutics Viral Vector Core (GT3), Salk Institute Gene Transfer Targeting and Therapeutics Core | 2026-08-07 09:28:10 | 10 | |||||
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Salk Institute Functional Genomics Core Facility Resource Report Resource Website |
Salk Institute Functional Genomics Core Facility (RRID:SCR_014841) | FGL | core facility, access service resource, service resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 5,2024.Core facility that provides Salk researchers access to gene expression analysis services such as whole-genome expression and genotyping using Affymetrix GeneChip technology, high-throughput qPCR and SNP services using Fluidigm Biomark System and Applied Biosystems 7900HT System, and DNA miniprep extraction using Qiagen BioRobot. | core facility, la jolla, genomics, gene, snp, genotype | Salk Institute Functional Genomics Core Facility ; NCI CCSG P30 014195 |
THIS RESOURCE IS NO LONGER IN SERVICE. | SCR_014841 | 2026-08-07 09:28:06 | 0 | |||||||||
|
miRTargetLink Resource Report Resource Website 10+ mentions |
miRTargetLink (RRID:SCR_026858) | software resource, data access protocol, web service | Web application provides users with visualization interface to explore and analyze interaction networks between miRNAs and target genes. | visualization interface, explore and analyze interaction networks, miRNAs and target genes, miRNA, interaction network, gene, | EU FP7 project BestAgeing ; Saarland University. |
PMID:27089332 DOI:10.1093/nar/gkab297 |
Free, Freely available | SCR_026858 | miRTargetLink 2.0 | 2026-08-07 09:30:45 | 30 | ||||||||
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Pharmaron Resource Report Resource Website |
Pharmaron (RRID:SCR_028035) | commercial organization, service resource | Contract Research, Development, and Manufacturing Organization (CRDMO) supporting the life sciences industry. Founded in 2004, it provides comprehensive services for small molecules, biologics, and cell and gene therapies (CGT) from discovery to commercialization. Offers integrated R&D, laboratory services, and manufacturing. | Contract Research, Development, Manufacturing, life sciences industry, services, small molecules, biologics, cell, gene, therapies | SCR_028035 | 2026-08-07 09:31:06 | 0 |
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