Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
MLST Resource Report Resource Website 1000+ mentions |
MLST (RRID:SCR_010245) | database, data or information resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on March 17, 2022. A nucleotide sequence based approach for the unambiguous characterisation of isolates of bacteria and other organisms via the internet. The aim of MLST is to provide a portable, accurate, and highly discriminating typing system that can be used for most bacteria and some other organisms. It is envisaged that this approach will be particularly helpful for the typing of bacterial pathogens. To achieve this aim we have taken the proven concepts of multilocus enzyme electrophoresis (MLEE) and have adapted them so that alleles at each locus are defined directly, by nucleotide sequencing, rather than indirectly from the electrophoretic moblity of their gene products. MLST was developed in the laboratories of Martin Maiden, Dominique Caugant, Ian Feavers, Mark Achtman and Brian Spratt. This site is hosted at Imperial College with funding from the Wellcome Trust. The location of the subsites for the individual species are shown on their respective front pages. | has parent organization: Imperial College London; London; United Kingdom | Wellcome Trust | THIS RESOURCE IS NO LONGER IN SERVICE. | nlx_156883 | SCR_010245 | 2026-08-04 09:42:37 | 1230 | |||||||||
|
Brain Intensity AbNormality Classification Algorithm Resource Report Resource Website 1+ mentions |
Brain Intensity AbNormality Classification Algorithm (RRID:SCR_024928) | BIANCA | segmentation software, data processing software, software resource, software application, image analysis software | Software tool for automated segmentation of white matter hyperintensities. Classifies image’s voxels based on their intensity and spatial features, and the output image represents the probability per voxel of being WMH. Flexible in terms of MRI modalities to use and offers different options for weighting spatial information, local spatial intensity averaging, and different options for choice of number and location of training points. | images voxels classification, automated segmentation of white matter hyperintensities, white matter hyperintensities, | is a plug in for: FSL | Wellcome Trust ; Wolfson Foundation ; UK Stroke Association ; NIHR Oxford Biomedical Research Centre |
PMID:27402600 | Free, Freely available | SCR_024928 | BIANKA:Brain Intensity AbNormality Classification Algorithm | 2026-08-04 09:45:38 | 3 | ||||||
|
RNAmut Resource Report Resource Website |
RNAmut (RRID:SCR_026965) | software resource, software toolkit, source code | Software package for robust identification of somatic mutations in acute myeloid leukemia using RNA-sequencing. Detects clinically important somatic mutations from RNA-seq data on relatively small gene panel (typically less than 100 genes). | identification of somatic mutations, acute myeloid leukemia, RNA-sequencing, clinically important somatic mutations, RNA-seq data, small gene panel, | Wellcome Trust ; European Research Council ; European Union Horizon 2020 |
PMID:31649132 | Free, Available for download, Freely available | SCR_026965 | 2026-08-04 09:46:07 | 0 | |||||||||
|
ped-sim Resource Report Resource Website 1+ mentions |
ped-sim (RRID:SCR_026957) | simulation software, software application, software resource, source code | Software tool to simulate pedigree structures. Used for simulating relatives that can utilize either sex-specific or sex averaged genetic maps and also either model of crossover interference or traditional Poisson model for inter-crossover distances. | Pedigree simulator, simulate pedigree structures, simulating relatives, sex-specific, sex averaged, genetic maps, | NIGMS R35 GM133805; Alfred P. Sloan Research Fellowship ; United States-Israel Binational Science Foundation ; NHLBI R01 HL0113323; NHLBI P01 HL045222; NIDDK R01 DK047482; NIDDK R01 DK053889; NIGMS T32 GM007617; NIGMS T32 GM083937; Wellcome Trust |
PMID:31860654 | Free, Available for download, Freely available | SCR_026957 | Ped-sim | 2026-08-04 09:46:06 | 2 | ||||||||
|
TWOMBLI Resource Report Resource Website |
TWOMBLI (RRID:SCR_027217) | software resource, software toolkit, source code | Software pipeline includes metrics of matrix alignment, length, branching, end points, gaps, fractal dimension, curvature, and the distribution of fibre thickness. FIJI macro for quantifying pattern in extracellular matrix. | quantifying pattern in extracellular matrix, matrix alignment, length, branching, end points, gaps, fractal dimension, curvature, distribution of fibre thickness, | is a plug in for: Fiji | Cancer Research UK ; UK Medical Research Council ; Wellcome Trust ; Spanish Society for Medical Oncology |
PMID:33504622 | Free, Available for download, Freely available, | SCR_027217 | Workflow Of Matrix BioLogy Informatics, , Workflow Of Matrix BioLogy Informatics (TWOMBLI) | 2026-08-04 09:46:09 | 0 | |||||||
|
Vireo Resource Report Resource Website 1+ mentions |
Vireo (RRID:SCR_027463) | software application, software resource, source code | Software tool for Bayesian demultiplexing of pooled single-cell RNA-seq data without genotype reference. | Bayesian demultiplexing, pooled single-cell RNA-seq data, without genotype reference, | University of Cambridge ; EMBL-EBI ; National Health and Medical Research Council of Australia ; Wellcome Trust ; Medical Research Council |
PMID:31836005 | Free, Available for download, Freely available | SCR_027463 | 2026-08-04 09:46:13 | 1 | |||||||||
|
Cell Model Passports Resource Report Resource Website 1+ mentions |
Cell Model Passports (RRID:SCR_027682) | database, data or information resource, catalog | Hub for clinical, genetic and functional datasets of preclinical cancer models.Provides details of cell model relationships, patient and clinical information, as well as access to associated genetic and functional datasets. Passports database contains curated details and standardized annotation for cell models, including cancer organoid cultures. Users can navigate database via tissue, cancer-type, genetic feature and data availability to select model. REST-API provides programmatic data access and exploration. | clinical, genetic, functional, datasets, preclinical cancer models, | has parent organization: Wellcome Trust Sanger Institute; Hinxton; United Kingdom | Wellcome Trust ; Wellcome Sanger Institute |
PMID:30260411 | Free, Freely available | SCR_027682 | 2026-08-04 09:46:16 | 2 | ||||||||
|
TryTripDB Resource Report Resource Website |
TryTripDB (RRID:SCR_028607) | database, data or information resource | Free online resource for data mining of genomic and functional data from these kinetoplastid parasites and is part of the VEuPathDB Bioinformatics Resource Center. Integrates functional genome scale datasets (e.g. transcript expression, protein expression, genetic variation data) and information predicted from automated bioinformatics pipelines and from manual curation. Provides a user friendly web interface and a number of tools and functions for users to conduct in silico experiments to ask questions and generate hypotheses. Researchers can also contribute their expertise via the User Comments form and Apollo annotation platform, and utilize cloud-based workspace to analyze their own data. | data mining, genomic data, functional data, kinetoplastid parasites, | NIAID ; Wellcome Trust |
PMID:36656904 | Free, Freely available | SCR_028607 | 2026-08-04 09:46:28 | 0 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the RRID Resources search. From here you can search through a compilation of resources used by RRID and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that RRID has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on RRID then you can log in from here to get additional features in RRID such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into RRID you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
