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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Specification URL Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
bsseq
 
Resource Report
Resource Website
1+ mentions
bsseq (RRID:SCR_001072) sequence analysis software, software application, data processing software, data analysis software, software resource R package with tools for analyzing and visualizing bisulfite sequencing data. bisulfite sequencing, analyze, r, sequence analysis software, data analysis software, bio.tools is listed by: OMICtools
is listed by: Debian
is listed by: bio.tools
has parent organization: Bioconductor
Free, Available for download, Freely available OMICS_01847, biotools:bsseq https://bio.tools/bsseq SCR_001072 bsseq - Analyze manage and store bisulfite sequencing data 2026-08-03 09:31:16 8
MmPalateMiRNA
 
Resource Report
Resource Website
1+ mentions
MmPalateMiRNA (RRID:SCR_001070) software application, data processing software, source code, data analysis software, software resource THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 23,2022. Software R package written for analysis of murine palate miRNA two-color expression data. murine, palate, mirna, two color expression, open source, r is listed by: OMICtools
is hosted by: Bioconductor
PMID:23298515 THIS RESOURCE IS NO LONGER IN SERVICE OMICS_00788 SCR_001070 2026-08-03 09:31:14 1
R453Plus1Toolbox
 
Resource Report
Resource Website
1+ mentions
R453Plus1Toolbox (RRID:SCR_001105) sequence analysis software, software toolkit, software application, data processing software, data analysis software, software resource R software toolbox of functions for the analysis of data generated by Roche's 454 sequencing platform. Additional functions are included for quality assurance, annotation and visualization of detected variants, complementing the software tools shipped by Roche with their product. A pipeline for the detection of structural variants is provided. genome, sequence, visualization, structural variants, r, sequence analysis software is listed by: OMICtools
is hosted by: Bioconductor
PMID:21349869 Free, Available for download, Freely available OMICS_01354 SCR_001105 2026-08-03 09:31:14 4
RmiR
 
Resource Report
Resource Website
RmiR (RRID:SCR_001069) RmiR sequence analysis software, software application, data processing software, data analysis software, software resource R package that contains functions to merge microRNA and respective targets using different databases. micro rna, mrna, function, target, r, sequence analysis software is listed by: OMICtools
has parent organization: Bioconductor
THIS RESOURCE IS NO LONGER IN SERVICE OMICS_00789 https://rdrr.io/bioc/RmiR/ SCR_001069 2026-08-03 09:31:16 0
CGEN
 
Resource Report
Resource Website
10+ mentions
CGEN (RRID:SCR_001251) CGEN software resource, data processing software, software application, data analysis software Software R package for analysis of case-control studies in genetic epidemiology. genetic, epidemiology, r, case-control, clustering, multiple comparison, snp is listed by: OMICtools
has parent organization: Bioconductor
PMID:21387464 Free, Available for download, Freely available OMICS_02089 SCR_001251 CGEN - An R package for analysis of case-control studies in genetic epidemiology 2026-08-03 09:31:19 17
Jmosaics
 
Resource Report
Resource Website
Jmosaics (RRID:SCR_001094) sequence analysis software, software application, data processing software, data analysis software, software resource R software that detects enriched regions of ChIP-seq data sets jointly. chip seq, data, genomics, sequencing, r, sequence analysis software is listed by: OMICtools
is hosted by: Bioconductor
Free, Available for download, Freely available OMICS_00445 SCR_001094 2026-08-03 09:31:16 0
GenoSet
 
Resource Report
Resource Website
GenoSet (RRID:SCR_001275) GenoSet software resource, data processing software, software application, data analysis software Software package to load, manipulate, and plot copynumber and BAF data by providing classes similar to ExpressionSet for copy number analysis. The class extends ExpressionSet by adding a locData slot for a RangedData or GRanegs object. This object contains feature genome location data and provides for efficient subsetting on genome location. CNSet and BAFSet extend GenoSet and require assayData matrices for Copy Number (cn) or Log-R Ratio (lrr) and B-Allele Frequency (baf) data. Implements and provides convenience functions for processing of copy number and B-Allele Frequency data. copy number variation, data representation, infrastructure, microarray, snp is listed by: OMICtools
has parent organization: Bioconductor
Artistic License, v2 OMICS_02063 SCR_001275 genoset - Provides classes similar to ExpressionSet for copy number analysis 2026-08-03 09:31:17 0
CGHbase
 
Resource Report
Resource Website
1+ mentions
CGHbase (RRID:SCR_001279) CGHbase software resource, data processing software, software application, data analysis software Software package that contains functions and classes that are needed by arrayCGH packages. copy number variation, infrastructure, microarray is listed by: OMICtools
has parent organization: Bioconductor
Free, Available for download, Freely available OMICS_02057 SCR_001279 CGHbase: Base functions and classes for arrayCGH data analysis 2026-08-03 09:31:16 1
Simpleaffy
 
Resource Report
Resource Website
50+ mentions
Simpleaffy (RRID:SCR_001302) Simpleaffy software resource, data processing software, software application, data analysis software Software package that provides high level functions for reading Affy .CEL files, phenotypic data, and then computing simple things with it, such as t-tests, fold changes and the like. It makes heavy use of the affy library. It also has some basic scatter plot functions and mechanisms for generating high resolution journal figures. affymetrix, annotation, data import, differential expression, microarray, one channel, preprocessing, quality control, report writing, transcription, visualization is listed by: OMICtools
has parent organization: Bioconductor
PMID:16076888 GNU General Public License, v2 or newer OMICS_02034 SCR_001302 Simpleaffy - Very simple high level analysis of Affymetrix data 2026-08-03 09:31:19 85
rMAT
 
Resource Report
Resource Website
10+ mentions
rMAT (RRID:SCR_001583) software application, data processing software, source code, data analysis software, software resource Software package for normalizing and analyzing tiling arrays and ChIP-chip data. It is the R-version of a MAT program. chip-seq, normalize data, tiling array, mat, r is listed by: OMICtools
has parent organization: Bioconductor
PMID:20089513 Free, Available for download, Freely available OMICS_00810 http://www.rglab.org SCR_001583 2026-08-03 09:31:22 16
CGHcall
 
Resource Report
Resource Website
10+ mentions
CGHcall (RRID:SCR_001578) software resource, data processing software, software application, data analysis software Software that calls aberrations for array CGH data using a six state mixture model and several biological concepts. It is written in R. cgh data analysis, objective classification, data aberration is listed by: OMICtools
is hosted by: Bioconductor
Free, Available for download, Freely available OMICS_00709 SCR_001578 2026-08-03 09:31:27 30
SPADE
 
Resource Report
Resource Website
100+ mentions
SPADE (RRID:SCR_001810) software application, data processing software, data analysis software, software resource, data visualization software An analysis and visualization software tool for high dimensional flow cytometry data that organizes cells into hierarchies of related phenotypes. software package, mac os x, unix/linux, windows, r, clustering, flow cytometry, gui, graph, network, visualization is listed by: OMICtools
has parent organization: Bioconductor
is a plug in for: FlowJo
PMID:21964415 Free, Available for download, Freely available OMICS_05639 http://cytospade.org/ http://www.bioconductor.org/packages/release/bioc/html/spade.html SCR_001810 Spanning tree Progression of Density normalized Events, SPADE - An analysis and visualization tool for Flow Cytometry 2026-08-03 09:31:30 275
Gene Ontology
 
Resource Report
Resource Website
10000+ mentions
Gene Ontology (RRID:SCR_002811) GO organization portal, portal, consortium, knowledge environment resource, data or information resource, project portal Computable knowledge regarding functions of genes and gene products. GO resources include biomedical ontologies that cover molecular domains of all life forms as well as extensive compilations of gene product annotations to these ontologies that provide largely species-neutral, comprehensive statements about what gene products do. Used to standardize representation of gene and gene product attributes across species and databases. gene, product, annotation, molecular, function, cellular, biological, role, database, query, obo, gold standard, bio.tools, FASEB list is used by: NIF Data Federation
is used by: GreenPhylDB
is used by: LIPID MAPS Proteome Database
is used by: Aging Portal
is used by: ChannelPedia
is used by: Open PHACTS
is used by: CoPub
is used by: PhenoGO
is used by: Database for Annotation Visualization and Integrated Discovery
is used by: MitoMiner
is used by: dcGO
is used by: Pathway Analysis Tool for Integration and Knowledge Acquisition
is used by: barleyGO
is used by: SynGO
is used by: Functional Annotation
is used by: SwissLipids
is listed by: BioPortal
is listed by: OBO
is listed by: OMICtools
is listed by: bio.tools
is listed by: Debian
is affiliated with: Mouse Genome Informatics: The Gene Ontology Project
is related to: GenNav
is related to: SynaptomeDB
is related to: High-Throughput GoMiner
is related to: Onto-Design
is related to: OnEx - Ontology Evolution Explorer
is related to: Avadis
is related to: GONUTS
is related to: PiNGO
is related to: Automated Microarray Pipeline
is related to: categoryCompare
is related to: globaltest
is related to: Semantic Measures Library
is related to: WegoLoc
is related to: AnimalTFDB
is related to: MEME Suite - Motif-based sequence analysis tools
is related to: Arabidopsis Hormone Database
is related to: DAVID
is related to: Arabidopsis thaliana Protein Interactome Database
is related to: TM4 Microarray Software Suite - TIGR MultiExperiment Viewer
is related to: pSTIING
is related to: GoMiner
is related to: FunSimMat
is related to: GeneSpeed- A Database of Unigene Domain Organization
is related to: Centre for Modeling Human Disease Gene Trap Resource
is related to: Patterns of Gene Expression in Drosophila Embryogenesis
is related to: Babelomics
is related to: BioPerl
is related to: GeneCruiser
is related to: GOLEM An interactive, graphical gene-ontology visualization, navigation, and analysis tool
is related to: GOToolBox Functional Investigation of Gene Datasets
is related to: Cotton EST Database
is related to: MouseNET
is related to: PLANTTFDB
is related to: T-profiler
is related to: Physico-Chemical Process
is related to: Integrated Molecular Interaction Database
is related to: SEGS
is related to: GOCat
is related to: Quantitative Enrichment of Sequence Tags
is related to: Neural-Immune Gene Ontology
is related to: INMEX
is related to: StRAnGER
is related to: QuickGO
is related to: Repository of molecular brain neoplasia data
is related to: Cardiovascular Gene Ontology Annotation Initiative
is related to: PANTHER
is related to: Short Time-series Expression Miner (STEM)
is related to: DATFAP
is related to: GORetriever
is related to: Gene Ontology Browsing Utility (GOBU)
is related to: GeneTools
is related to: GOSlimViewer
is related to: go-moose
is related to: Network Ontology Analysis
is related to: Onto-Compare
is related to: Onto-Express
is related to: OntoVisT
is related to: STRAP
is related to: CGAP GO Browser
is related to: COBrA
is related to: Gene Class Expression
is related to: GeneInfoViz
is related to: GOfetcher
is related to: GoFish
is related to: GOProfiler
is related to: GOanna
is related to: Manatee
is related to: Pandora - Protein ANnotation Diagram ORiented Analysis
is related to: TAIR Keyword Browser
is related to: Wandora
is related to: GOTaxExplorer
is related to: Onto-Miner
is related to: Onto-Translate
is related to: ToppGene Suite
is related to: DBD - Slim Gene Ontology
is related to: ONTO-PERL
is related to: Blip: Biomedical Logic Programming
is related to: OWL API
is related to: CLENCH
is related to: BiNGO: A Biological Networks Gene Ontology tool
is related to: CateGOrizer
is related to: FuSSiMeG: Functional Semantic Similarity Measure between Gene-Products
is related to: ProteInOn
is related to: GeneMerge
is related to: GraphWeb
is related to: ClueGO
is related to: CLASSIFI - Cluster Assignment for Biological Inference
is related to: GOHyperGAll
is related to: FuncAssociate: The Gene Set Functionator
is related to: GOdist
is related to: FuncExpression
is related to: FunCluster
is related to: FIVA - Functional Information Viewer and Analyzer
is related to: GARBAN
is related to: GOEx - Gene Ontology Explorer
is related to: SGD Gene Ontology Slim Mapper
is related to: GOArray
is related to: SNPsandGO
is related to: GoSurfer
is related to: GOtcha
is related to: MAPPFinder
is related to: GoAnnotator
is related to: MetaGeneProfiler
is related to: OntoGate
is related to: ProfCom - Profiling of complex functionality
is related to: SerbGO
is related to: SOURCE
is related to: Ontologizer
is related to: THEA - Tools for High-throughput Experiments Analysis
is related to: Generic GO Term Mapper
is related to: GREAT: Genomic Regions Enrichment of Annotations Tool
is related to: GoBean - a Java application for Gene Ontology enrichment analysis
is related to: TXTGate
is related to: GO-Module
is related to: IT-GOM: Integrated Tool for IC-based GO Semantic Similarity Measures
is related to: G-SESAME - Gene Semantic Similarity Analysis and Measurement Tools
is related to: MalaCards
is related to: FSST - Functional Similarity Search Tool
is related to: Expression Profiler
is related to: GOChase
is related to: GoPubMed
is related to: Whatizit
is related to: REViGO
is related to: WEGO - Web Gene Ontology Annotation Plot
is related to: Blast2GO
is related to: InterProScan
is related to: PubSearch
is related to: TrED
is related to: CharProtDB: Characterized Protein Database
is related to: VirHostNet: Virus-Host Network
is related to: Pathbase
is related to: GO Online SQL Environment (GOOSE)
is related to: Neurobehavior Ontology
is related to: InterSpecies Analysing Application using Containers
is related to: KOBAS
is related to: ConceptWiki
is related to: GeneTerm Linker
is related to: Bioconductor
is related to: ErmineJ
is related to: Gene Ontology For Functional Analysis (GOFFA)
is related to: MGI GO Browser
is related to: Comparative Toxicogenomics Database (CTD)
is related to: GOEAST - Gene Ontology Enrichment Analysis Software Toolkit
is related to: Ontology Lookup Service
is related to: LexGrid
is related to: WebGestalt: WEB-based GEne SeT AnaLysis Toolkit
is related to: g:Profiler
is related to: OwlSim
is related to: GOrilla: Gene Ontology Enrichment Analysis and Visualization Tool
is related to: YeTFaSCo
is related to: FastSemSim
is related to: RamiGO
is related to: AutismKB
is related to: GeneCodis
is related to: FunSpec
is related to: FunNet - Transcriptional Networks Analysis
is related to: PhenoM - Phenomics of yeast Mutants
is related to: agriGO
is related to: GOblet
is related to: DynGO
is related to: SeqExpress
is related to: ProbeExplorer
is related to: ECgene: Gene Modeling with Alternative Splicing
is related to: Organelle DB
is related to: Gemma
is related to: Candidate Genes to Inherited Diseases
is related to: Proteome Analyst PA-GOSUB
is related to: Network Analysis, Visualization and Graphing TORonto
is related to: GOstat
is related to: Onto-Express To Go (OE2GO)
is related to: Tk-GO
is related to: EGAN: Exploratory Gene Association Networks
is related to: Spotfire
is related to: GOMO - Gene Ontology for Motifs
is related to: GFINDer: Genome Function INtegrated Discoverer
is related to: Generic GO Term Finder
is related to: Agile Protein Interactomes DataServer
is related to: AgingDB
is related to: UBERON
is related to: Algal Functional Annotation Tool
is related to: gsGator
is related to: Flash Gviewer
is related to: Cerebellar Development Transcriptome Database
is related to: PlantNATsDB - Plant Natural Antisense Transcripts DataBase
is related to: EASE: the Expression Analysis Systematic Explorer
is related to: PiGenome
is related to: L2L Microarray Analysis Tool
is related to: MeGO
is related to: CELDA Ontology
is related to: Diabetes Disease Portal
is related to: MatrixDB
is related to: Kidney and Urinary Pathway Knowledge Base
is related to: MouseCyc
is related to: Candida Genome Database
is related to: Honey Bee Brain EST Project
is related to: ECO
is related to: FlyMine
is related to: Gramene
is related to: 3D-Interologs
is related to: Biomine
is related to: UniProtKB
is related to: NCBI BioSystems Database
is related to: EBIMed
is related to: Coremine Medical
is related to: EMAGE Gene Expression Database
is related to: GeneMANIA
is related to: Yeast Search for Transcriptional Regulators And Consensus Tracking
is related to: GeneTrail
is related to: Magic
is related to: Mouse Genome Informatics (MGI)
is related to: FlyBase
is related to: InterPro
is related to: InnateDB
is related to: canSAR
is related to: HPRD - Human Protein Reference Database
is related to: CRCView
is related to: Integrated Manually Extracted Annotation
is related to: LegumeIP
is related to: Renal Disease Portal
is related to: PhenoGO
is related to: DOAF
is related to: OBO
is related to: biomaRt
is related to: OncoboxPD
is parent organization of: AmiGO
is parent organization of: GOlr
is parent organization of: RefGenome
is parent organization of: OBO-Edit
is parent organization of: OWLTools
is parent organization of: Gene Ontology Tools
is parent organization of: Gene Ontology Extension
is parent organization of: SO
is parent organization of: go-db-perl
is parent organization of: go-perl
works with: topGO
works with: DIANA-mirPath
works with: GOnet
is organization facet of: Alliance of Genome Resources
European Union QLRI-CT-2001-0098;
European Union QLRI-CT-2001-00015;
NHGRI P41 HG002273
PMID:23161678
PMID:10802651
Free, Freely available, Available for download biotools:go, OMICS_02278, nif-0000-02915 http://bioportal.bioontology.org/ontologies/GO, https://bio.tools/go SCR_002811 the Gene Ontology, GO, Gene Ontology Resource, Gene Ontology 2026-08-03 09:32:09 10623
IMEx - The International Molecular Exchange Consortium
 
Resource Report
Resource Website
100+ mentions
IMEx - The International Molecular Exchange Consortium (RRID:SCR_002805) IMEx organization portal, data repository, portal, community building portal, service resource, database, storage service resource, consortium, data or information resource Interaction database from international collaboration between major public interaction data providers who share curation effort and develop set of curation rules when capturing data from both directly deposited interaction data or from publications in peer reviewed journals. Performs complete curation of all protein-protein interactions experimentally demonstrated within publication and makes them available in single search interface on common website. Provides data in standards compliant download formats. IMEx partners produce their own separate resources, which range from all encompassing molecular interaction databases, such as are maintained by IntAct, MINT and DIP, organism-centric resources such as BioGrid or MPIDB or biological domain centric, such as MatrixDB. They have committed to making records available, via PSICQUIC webservice, which have been curated to IMEx rules and are available to users as single, non-redundant set of curated publications which can be searched at the IMEx website. Data is made available in standards-compliant tab-deliminated and XML formats, enabling to visualize data using wide range of tools. Consortium is open to participation of additional partners and encourages deposition of data, prior to publication, and will supply unique accession numbers which may be referenced within final article. Submitters may send their data directly to any of member databases using variety of formats, but should conform to guidelines as to minimum information required to describe data. protein-protein interaction, nonredundant, protein interaction, interaction, proteomics, metadata standard, short course, molecular interaction, bio.tools, FASEB list is listed by: OMICtools
is listed by: bio.tools
is listed by: Debian
is affiliated with: MINT
is related to: MatrixDB
is related to: MPIDB
is related to: Database of Interacting Proteins (DIP)
is related to: Database of Interacting Proteins (DIP)
is related to: InnateDB
is related to: IntAct
is related to: Interaction Reference Index
is related to: MPIDB
is related to: UniProt
is related to: InnateDB
is related to: MatrixDB
is related to: Biological General Repository for Interaction Datasets (BioGRID)
is related to: I2D
is related to: Molecular Connections NetPro
is related to: SIB Swiss Institute of Bioinformatics
is related to: IntAct
is related to: PSI-MI
is related to: PSICQUIC Registry
is related to: mentha
is related to: Bioconductor
has parent organization: European Bioinformatics Institute
works with: CellPhoneDB
works with: Cytoscape
works with: IntAct
works with: MINT
works with: MPact: Representation of Interaction Data at MIPS
works with: Molecular Connections NetPro
works with: Biological General Repository for Interaction Datasets (BioGRID)
works with: InnateDB
works with: BIND
European Union PMID:22453911
PMID:17893861
Free, Freely available, Available for download nif-0000-00447, OMICS_01545, r3d100010669, biotools:imex http://imex.sourceforge.net/, https://bio.tools/imex, https://doi.org/10.17616/R3090W SCR_002805 The International Molecular Exchange Consortium, International Molecular Exchange Consortium 2026-08-03 09:32:01 144
MSstats
 
Resource Report
Resource Website
100+ mentions
MSstats (RRID:SCR_014353) software resource, data processing software, software application, data analysis software A package for statistical relative quantification of proteins and peptides in global, targeted, and data-independent proteomics. It handles shotgun, label-free, and label-based Selected Reaction Monitoring, as well as SWATH/DIA (Data Independent Acquisition) experiments. MSStats provide functionality for data processing and visualization, model-based statistical analysis, and model-based sample size calculations. data independent acquisition, statistical relative quantification, protein, peptide, data analysis software, data processing, data visualization, proteomics uses: R Project for Statistical Computing
is used by: Skyline
is listed by: Bioconductor
National Science Foundation CAREER award 1054826 DOI:10.1186/1471-2105-13-S16-S6 Acknowledgement requested, Available for download http://www.bioconductor.org/packages/release/bioc/html/MSstats.html SCR_014353 MSStats 2026-08-03 09:35:27 214
MetaCyto
 
Resource Report
Resource Website
1+ mentions
MetaCyto (RRID:SCR_016415) software toolkit, software application, data processing software, data analysis software, software resource Software tool for automated meta-analysis of mass and flow cytometry data. Provides functions for preprocessing, automated gating and meta-analysis of cytometry data and collection of cytometry data from the ImmPort database. automated, analysis, meta, flow, cytometry, data, bio.tools is listed by: Bioconductor
is listed by: NIDDK Information Network (dkNET)
is listed by: bio.tools
is listed by: Debian
is related to: The Immunology Database and Analysis Portal (ImmPort)
the National Institute of Allergy and Infectious Diseases HHSN272201200028C Free, Available for download, Freely available biotools:metacyto https://bio.tools/metacyto SCR_016415 2026-08-03 09:36:25 5
RnaSeqGeneEdgeRQL
 
Resource Report
Resource Website
RnaSeqGeneEdgeRQL (RRID:SCR_016699) software toolkit, software application, data processing software, data analysis software, software resource Software to study analysis of an RNA-Seq experiment using the Rsubread and edgeR packages. The workflow starts from read alignment and continues on to data exploration, to differential expression and, finally, to pathway analysis. The analysis includes plots, GO and KEGG analyses, and the analysis of a expression signature as generated by a prior experiment. study, analysis, RNA, sequencing, read, alignment, data is affiliated with: Bioconductor Free, Available for download, Freely available SCR_016699 2026-08-03 09:36:55 0
Piano
 
Resource Report
Resource Website
100+ mentions
Piano (RRID:SCR_003200) software resource, data processing software, software application, data analysis software Software R-package for running gene set analysis using various statistical methods, from different gene level statistics and a wide range of gene-set collections. The Piano package contains functions for combining the results of multiple runs of gene set analyses. r, omics, bio.tools is listed by: OMICtools
is listed by: bio.tools
is listed by: Debian
has parent organization: Chalmers University of Technology; Gothenburg; Sweden
has parent organization: Bioconductor
PMID:23444143 Free, Available for download, Freely available OMICS_01558, biotools:piano https://bio.tools/piano SCR_003200 2026-08-03 09:32:12 182
EGSEA
 
Resource Report
Resource Website
50+ mentions
EGSEA (RRID:SCR_015036) software toolkit, software resource, source code Method developed for RNA-sequencing data. EGSEA combines results from twelve algorithms and calculates collective gene set scores to improve the biological relevance of the highest ranked gene sets. gene set, rna sequencing, analysis method, r package, bio.tools is listed by: Debian
is listed by: bio.tools
is hosted by: Bioconductor
Victorian State Government Operational Infrastructure Support ;
Australian Government NHMRC IRIISS ;
NHMRC GNT1050661;
NHMRC GNT1045936;
NHMRC GNT1057854;
NHMRC GNT1104924
PMID:27694195 Free, Available for download biotools:egsea https://bio.tools/egsea SCR_015036 Ensemble of Gene Set Enrichment Analyses (EGSEA), Ensemble of Gene Set Enrichment Analyses 2026-08-03 09:35:43 62
CATALYSTLite
 
Resource Report
Resource Website
CATALYSTLite (RRID:SCR_017126) data analysis service, service resource, analysis service resource, production service resource Software tool as interactive Shiny web application that provides user interface to mass cytometry data processing pipeline implemented in CATALYST R Bioconductor package. interactive, Shiny, website, application, interface, mass, cytometry, data, processing, pipeline is used by: CATALYST
is related to: Bioconductor
has parent organization: University of Zurich; Zurich; Switzerland
Free, Freely available SCR_017126 2026-08-03 09:36:32 0

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