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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Genes Cognition and Psychosis Program Resource Report Resource Website 1+ mentions |
Genes Cognition and Psychosis Program (RRID:SCR_006292) | GCAP | portal, topical portal, disease-related portal, data or information resource | Schizophrenia related portal that aims to solve the mystery of genetic predisposition to psychosis, develop new methods for early diagnosis and prevention, and discover new treatments that will cure people suffering from it. Our objectives are to fully characterize: # neurobiological mechanisms related to susceptibility genes for schizophrenia and related clinical disorders; # genetic variation in aspects of cognition and emotionality associated with schizophrenia; and # small molecular targets for novel therapies. A unique feature of this Program is that its diverse scientific resources will be focused on a highly specific scientific agenda, that is to acquire the critical biological information about the susceptibility genes associated with schizophrenia and related illnesses. Our mission and goal, to understand the basic mechanisms of serious mental illness, has again guided us into new areas of research and to new insights. We have found evidence of new genes implicated in the cause of schizophrenia and involved in brain functions related to cognition and emotion and we have begun to explore how genes interact with each other and with the environment to individualize risk for these conditions. We are working now with over 20 genes related to schizophrenia. One of the key developments in our research over the past year has been the emergence of some targets for the development of novel therapeutics. We have discovered a new schizophrenia susceptibility gene, KCNH2, which represents the first clear target for the development of novel treatments. Just in this past year, for example, we published the first extensive statistical analysis of how schizophrenia genes may vary in their risk effects based on different genetic background (Nicodemus et al Hum Gen 2006), the first studies of schizophrenia genes interacting in effecting gene expression in brain (Lipska et al Hum Mol Genetics 2006a, Lipska et al Hum Mol Gen 2006 b); the first evidence that the mechanism of genetic association of NRG1 with schizophrenia involves a novel isoform of the gene in human brain (Law et al PNAS 2006), and the first evidence that MAOA may be linked to mood and impulse control because it effects critical mood regulatory neural networks (Meyer-Lindenberg et al PNAS 2006). | gene, genetic variation, cognition, emotion, therapeutics, treatment, drug development, brain function, psychosis, drug |
is related to: NIMH Intramural Research Program Clinical Brain Disorders Branch has parent organization: NIMH Division of Intramural Research Programs |
Schizophrenia, Mental illness, Psychiatric disorder | NIMH | nlx_151948 | SCR_006292 | 2026-08-06 09:26:35 | 1 | |||||||
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WashU Epigenome Browser Resource Report Resource Website 100+ mentions |
WashU Epigenome Browser (RRID:SCR_006208) | Human Epigenome Browser | source code, data set, software resource, data analysis software, data or information resource, data processing software, software application | Software tool for visualizing and interacting with whole-genome datasets. Browser hosts Human Epigenome Atlas data produced by Roadmap Epigenomics project, but its use of advanced, multi-resolution data formats and its user-friendly interface make it possible for investigators to upload and visualize their own data as custom tracks. Developed and maintained by Epigenome Informatics Group at Washington University in St. Louis. | epigenomics, genome browser, visualization, clustering, genome, sequencing, next-generation sequencing, virus |
is listed by: OMICtools is related to: VizHub is related to: UCSC Genome Browser is related to: Human Epigenome Atlas has parent organization: Washington University School of Medicine in St. Louis; Missouri; USA has parent organization: Roadmap Epigenomics Project |
PMID:22127213 | Free, Freely available | OMICS_00629, nlx_151754 | http://epigenomegateway.wustl.edu/browser/ | SCR_006208 | WashU Epigenome Browser, WashU Genome Browser, Human Epigenome Browser at Washington University | 2026-08-06 09:26:34 | 145 | |||||
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UMD-BRCA1/ BRCA2 databases Resource Report Resource Website 10+ mentions |
UMD-BRCA1/ BRCA2 databases (RRID:SCR_006128) | UMD-BRCA1/ BRCA2 databases | storage service resource, service resource, data repository, data or information resource, database | The UMD-BRCA1/BRCA2 databases have been set up in a joined national effort through the network of 16 diagnostic laboratories to provide up-to-date information about mutations of the BRCA1 and BRCA2 genes identified in patients with breast and/or ovarian cancer. These databases currently contain published and unpublished information about the BRCA1/BRCA2 mutations reported in French diagnostic laboratories. This database includes 28 references and 5530 mutations (1440 different mutations and 786 protein variants) The databases of BRCA1 and BRCA2 mutations were built using the Universal Mutation Database tool. For each mutation, information is provided at several levels: * at the gene level: exon and codon number, wild type and mutant codon, mutation event, mutation name and, * at the protein level: wild type and mutant amino acid, binding domain, affected domain. If you want to submit a mutation, please contact R. Lidereau., S. Caputo. or E. Rouleau. | cancer, gene, mutation, exon, codon, wild type, mutant, mutation, protein, amino acid, binding domain, affected domain, brca1, brca2, variant, polymorphism, unclassified variant, unknown variant, female, woman, bio.tools |
is listed by: Debian is listed by: bio.tools has parent organization: National Institute of Health and Medical Research; Rennes; France |
Breast cancer, Ovarian cancer | French National Cancer Institute ; European Union FP7/2007-2013; Association dAide a la Recherche Cancerologique de Saint Cloud |
PMID:22144684 | The UMD- BRCA1 Locus Specific Databases constitute the intellectual property of the curators of the database. Any unauthorized copying, Storage or distribution of this material without written permission from the curators would lead to copyright infringement with possible ensuing litigation. | nlx_151608, biotools:brca_share | https://bio.tools/brca_share | SCR_006128 | UMD-BRCA1 mutations database, UMD-BRCA1 / BRCA2 databases, UMD-BRCA1/BRCA2 databases | 2026-08-06 09:26:30 | 26 | |||
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ISRCTN Registry Resource Report Resource Website 500+ mentions |
ISRCTN Registry (RRID:SCR_006087) | international standard specification, data or information resource, standard specification, narrative resource, database | A primary clinical trial registry which houses proposed, ongoing, and completed clinical research studies. An ISRCTN is a simple numeric system for the unique identification of randomized controlled trials worldwide. The registry provides content validation and curation and the unique identification number necessary for publication. Submitted studies range from cancer to urological diseases. | clinical trial, unique identifier, observational trial, interventional trial, health, registry, clinical, trial, FASEB list |
is used by: Current Controlled Trials is related to: Current Controlled Trials has parent organization: Current Controlled Trials |
Department of Health UK ; Medical Research Council ; Wellcome Trust ; Canadian Institutes of Health Research |
Public | nlx_151501, r3d100013307 | http://www.isrctn.org, https://doi.org/10.17616/R31NJMRF | SCR_006087 | International Standard Randomised Controlled Trial Number Registry, International Standard Randomized Controlled Trial Number Register | 2026-08-06 09:26:30 | 744 | ||||||
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InterSpecies Analysing Application using Containers Resource Report Resource Website 10+ mentions |
InterSpecies Analysing Application using Containers (RRID:SCR_006243) | ISAAC | software resource, service resource, production service resource, data analysis service, analysis service resource | Web based tool to enable the analysis of sets of genes, transcripts and proteins under different biological viewpoints and to interactively modify these sets at any point of the analysis. Detailed history and snapshot information allows tracing each action. One can switch back to previous states and perform new analyses. Sets can be viewed in the context of genomes, protein functions, protein interactions, pathways, regulation, diseases and drugs. Additionally, users can switch between species with an automatic, orthology based translation of existing gene sets. Sets as well as results of analyses can be exchanged between members of groups. | protein function, protein interaction, pathway, mirna, disease, drug, gene, genome, transcript, protein, regulation |
is listed by: OMICtools is related to: Gene Ontology has parent organization: University of Wurzburg; Bavaria; Germany |
PMID:24428905 | OMICS_02237 | SCR_006243 | ISAAC (Interspecies Analysing Application using Containers), ISAAC - InterSpecies Analysing Application using Containers, Interspecies Analysing Application using Containers - ISAAC | 2026-08-06 09:26:34 | 35 | |||||||
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AREDS2: The Age-Related Eye Disease Study 2 Resource Report Resource Website |
AREDS2: The Age-Related Eye Disease Study 2 (RRID:SCR_006306) | AREDS2 | research forum portal, topical portal, clinical trial, disease-related portal, data or information resource, portal | Study designed to assess the effects of oral supplementation of high doses of macular xanthophylls (lutein and zeaxanthin) and/or omega -3 LCPUFAs (DHA and EPA) for the treatment of AMD and cataract. | oral, supplement, xanthophyll, omega-3 fatty acid, macular, degeneration, eye, disease, clinical, trial, age, related, cataract | Age-Related Macular Degeneration, Cataract, Aging | U.S. Department of Health and Human Services HHSN260200500007C; NEI N01 EY50007 |
PMID:22840421 | nif-0000-00522 | SCR_006306 | AREDS2, Age-Related Eye Disease Study 2 | 2026-08-06 09:26:33 | 0 | ||||||
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Brad Smith Magnetic Resonance Imaging of Embryos Resource Report Resource Website |
Brad Smith Magnetic Resonance Imaging of Embryos (RRID:SCR_006300) | Brad Smith MRI of Embryos | image collection, data set, video resource, data or information resource | Data set of image collections and movies including Magnetic Resonance Imaging of Embryos, Human Embryo Imaging, MRI of Cardiovascular Development, and Live Embryo Imaging. Individual MRI slice images, three-dimensional images, animations, stereo-pair animations, animations of organ systems, and photo-micrographs are included. | embryo, magnetic resonance imaging, embryonic development, magnetic resonance microscopy, cardiovascular development, cardiovascular, development, heart, blood vessel, in-utero, in-vitro, embryonic mouse, newborn mouse, embryonic human |
is related to: Magnetic Resonance Microscopy of Mouse Embryo Specimens is related to: Multi-Dimensional Human Embryo has parent organization: University of Michigan; Ann Arbor; USA |
Normal, Mutant, Gentically-manipulated | nlx_151971 | SCR_006300 | Brad Smith Research MRI of Embryos, Brad Smith Research | 2026-08-06 09:26:33 | 0 | |||||||
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HUDSEN Resource Report Resource Website 1+ mentions |
HUDSEN (RRID:SCR_006324) | HUDSEN | portal, community building portal, data or information resource | Forum for researchers in human developmental biology and related fields to meet and establish links. | development, genetics, embryology, embryonic, bio.tools |
is listed by: bio.tools is listed by: Debian is related to: eMouseAtlas is related to: aGEM has parent organization: Newcastle University; Newcastle upon Tyne; United Kingdom is parent organization of: HUDSEN Electronic Atlas of the Developing Human Brain is parent organization of: HUDSEN Human Gene Expression Spatial Database |
nlx_152025, biotools:hudsen | https://bio.tools/hudsen | SCR_006324 | Human Developmental Studies Network | 2026-08-06 09:26:33 | 5 | |||||||
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phenomeNET Resource Report Resource Website 10+ mentions |
phenomeNET (RRID:SCR_006165) | PhenomeNet | source code, software resource, service resource, production service resource, data analysis service, data or information resource, analysis service resource, database | PhenomeNet is a cross-species phenotype similarity network. It contains the experimentally observed phenotypes of multiple species as well as the phenotypes of human diseases. PhenomeNet provides a measure of phenotypic similarity between the phenotypes it contains. The latest release (from 22 June 2012) contains 124,730 complex phenotype nodes taken from the yeast, fish, worm, fly, rat, slime mold and mouse model organism databases as well as human disease phenotypes from OMIM and OrphaNet. The network is a complete graph in which edge weights represent the degree of phenotypic similarity. Phenotypic similarity can be used to identify and prioritize candidate disease genes, find genes participating in the same pathway and orthologous genes between species. To compute phenotypic similarity between two sets of phenotypes, we use a weighted Jaccard index. First, phenotype ontologies are used to infer all the implications of a phenotype observation using several phenotype ontologies. As a second step, the information content of each phenotype is computed and used as a weight in the Jaccard index. Phenotypic similarity is useful in several ways. Phenotypic similarity between a phenotype resulting from a genetic mutation and a disease can be used to suggest candidate genes for a disease. Phenotypic similarity can also identify genes in a same pathway or orthologous genes. PhenomeNet uses the axioms in multiple species-dependent phenotype ontologies to infer equivalent and related phenotypes across species. For this purpose, phenotype ontologies and phenotype annotations are integrated in a single ontology, and automated reasoning is used to infer equivalences. Specifically, for every phenotype, PhenomeNet infers the related mammalian phenotype and uses the Mammalian Phenotype Ontology for computing phenotypic similarity. Tools: * PhenomeBLAST - A tool for cross-species alignments of phenotypes * PhenomeDrug - method for drug-repurposing | phenotype, disease, gene, genotype, allele, model organism, human disease, candidate disease gene, pathway, orthologous gene, ortholog, ontology, semantic similarity, mutant phenotype, disease pathway, alignment, pharmacogenomics, drug |
is related to: OMIM is related to: Orphanet is related to: PharmGKB is related to: MPO has parent organization: University of Cambridge; Cambridge; United Kingdom |
European Union 7th FPRICORDO project 248502; NHGRI R01 HG004838-02; BBSRC BBG0043581 |
PMID:21737429 | The source code and all data are freely available on http://phenomeblast.googlecode.com | nlx_151667 | SCR_006165 | PhenomeNet - Cross Species Phenotype Network | 2026-08-06 09:26:31 | 13 | |||||
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Phenexplorer Resource Report Resource Website 1+ mentions |
Phenexplorer (RRID:SCR_006156) | PhenExplorer | service resource, production service resource, data analysis service, data or information resource, analysis service resource, database | The PhenExplorer allows you to browse the Human Phenotype Ontology (HPO) in different ways, using the tabs ''''by features'''', ''''by disease'''', ''''by ontology'''' or ''''by genes''''. Clicking on a particular phenotypic feature (HPO-term) you can get a list of disease entries that are linked to it (i.e. diseases that are annotated with this HPO-term). You can also visualize this term in the context of the ontological structure. Finally, a lists of genes can be displayed, that are known to cause (when mutated) the linked diseases mentioned above. For each disease you can get the list of linked HPO-terms and genes. You can also search for specific genes and explore to which HPO-terms and diseases they are linked. | phenotype, ontology, feature, disease, gene |
is used by: Human Phenotype Ontology is related to: Human Phenotype Ontology has parent organization: Charite - Universitatsmedizin Berlin; Berlin; Germany |
nlx_151656 | SCR_006156 | PhenExplorer - Explore the Human Phenotype Ontology | 2026-08-06 09:26:31 | 2 | ||||||||
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Congress of Neurological Surgeons Online Image Database Resource Report Resource Website 1+ mentions |
Congress of Neurological Surgeons Online Image Database (RRID:SCR_006310) | CNS Image Database | image collection, data set, data or information resource | Data set of almost 2,000 neurosurgical images using a variety of search options. | photo, neurosurgery, angiogram, mri, bone scan, composite, computed tomography, mra, radiograph, peripheral nerve, pediatric, cranial disease, spinal disease, degenerative, epilepsy, developmental, infection, neoplasm, normal, postoperative complication, tarlov cyst, traumatic, vascular lesion | has parent organization: Congress of Neurological Surgeons University of Neurosurgery | nif-0000-06718 | SCR_006310 | University of Neurosurgery Image Database, CNS Online Image Database, University of Neurosurgery Online Image Database, Congress of Neurological Surgeons Image Database | 2026-08-06 09:26:33 | 1 | ||||||||
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HMS LINCS Database Resource Report Resource Website 10+ mentions |
HMS LINCS Database (RRID:SCR_006454) | LINCS, HMS-LINCS, HMS LINCS | storage service resource, service resource, data repository, data or information resource, database | Database that contains all publicly available HMS LINCS datasets and information for each dataset about experimental reagents and experimental and data analysis protocols. Experimental reagents include small molecule perturbagens, cells, antibodies, and proteins. | tumor, cancer, database, molecular signature, perturbing agent |
is used by: LINCS Information Framework is recommended by: National Library of Medicine is related to: Broad Institute is related to: OME-TIFF Format is related to: HMS LINCS Center has parent organization: Harvard Medical School; Massachusetts; USA is parent organization of: LINCS Connectivity Map |
Cancer, Diseased joint, Autoimmune disease | NIH Common Fund ; NHGRI U54 HG006097 |
Available to the research community | nlx_156062, r3d100011833 | http://lincs.hms.harvard.edu/, https://doi.org/10.17616/R3ZK9R | SCR_006454 | NIH LINCS Program, NIH LINCS, Harvard Medical School LINCS Database, LINCS Program, Library of Integrated Network-based Cellular Signatures | 2026-08-06 09:26:36 | 11 | ||||
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Embryo Imaging Resource Report Resource Website 1+ mentions |
Embryo Imaging (RRID:SCR_006329) | Embryo Imaging | image collection, data set, video resource, data or information resource | Collection of high resolution images and movies of mouse and human embryos produced using high resolution episcopic microscopy (HREM). Each data set is a series of block-face images generated during sectioning through an entire embryo, typically cut at 2-3 micrometers. Datasets are organized by approximate developmental stage and each embryo has been assigned a specimen ID (SID) for identification. This is an ongoing project funded by the Wellcome Trust to provide comprehensive imaging of normal and mutant mouse embryos that will complement the standard anatomical texts and form the basis for systematic phenotyping. * Movies: A 3D reconstruction shows each embryo, and lower resolution movies created through each orthogonal plane enable you to quickly review the data set. * Image Stacks: In the stack viewer, you can step through the images in sequence, zoom in to see fine details and adjust the image contrast. * NEW: Embryo Comparison: Two image stacks can now be compared in the stack viewer. | embryo, embryonic mouse, movie, high resolution image stack, image stack, comparison, high resolution episcopic microscopy, 3d reconstruction, imaging | Normal, Mutant | Wellcome Trust | Creative Commons Attribution-NonCommercial-ShareAlike License | nlx_152031 | SCR_006329 | 2026-08-06 09:26:33 | 4 | |||||||
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COLT-Cancer Resource Report Resource Website 10+ mentions |
COLT-Cancer (RRID:SCR_006485) | COLT-Cancer | service resource, production service resource, data analysis service, data or information resource, analysis service resource, database | The COLT-Cancer database is a collection of shRNA dropout signatures profiles, covering ~16000 human genes, and derived from more than 70 Pancreatic, Ovarian and Breast human cancer cell-lines using the microarray detection platform developed in the COLT (CCBR-OICR Lentiviral Technology) facility at the Moffat Lab. All shRNA dropout profiles are freely available through download or queries via this website. | gene, shrna profile, shrna, functional genetics, cancer, cell line, bio.tools |
is listed by: Debian is listed by: bio.tools has parent organization: University of Toronto; Ontario; Canada |
Pancreatic cancer, Ovarian cancer, Breast cancer | Ontario Institute for Cancer Research ; Terry Fox Research Institute ; Canadian Institutes of Health Research ; Canada Foundation for Innovation ; Ontario Research Fund |
PMID:22102578 | Free | biotools:colt-cancer, nlx_149426 | https://bio.tools/colt-cancer | SCR_006485 | CCBR-OICR Lentiviral Technology Cancer, COLT-Cancer database | 2026-08-06 09:26:35 | 11 | |||
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MITRE Neuroinformatics Resource Report Resource Website |
MITRE Neuroinformatics (RRID:SCR_006508) | MITRE Neuroinfomatics | software resource, data distribution software, data analysis software, data processing software, data visualization software, software application, simulation software, data transfer software | This resource''s long-term goal is to develop informatics methodologies and tools that will increase the creativity and productivity of neuroscience investigators, as they work together to use shared human brain mapping data to generate and test ideas far beyond those pursued by the data''s originators. This resource currently has four major projects supporting this goal: * Database tools: The goal of the NeuroServ project is to provide neuroscience researchers with automated information management tools that reduce the effort required to manage, analyze, query, view, and share their imaging data. It currently manages both structural magnetic resonance image (MRI) datasets and diffusion tensor image (DTI) datasets. NeuroServ is fully web-enabled: data entry, query, processing, reporting, and administrative functions are performed by qualified users through a web browser. It can be used as a local laboratory repository, to share data on the web, or to support a large distributed consortium. NeuroServ is based on an industrial-quality query middleware engine MRALD. NeuroServ includes a specialized neuroimaging schema and over 40 custom Java Server Pages supporting data entry, query, and reporting to help manage and explore stored images. NeuroServ is written in Java for platform independence; it also utilizes several open source components * Data sharing: DataQuest is a collaborative forum to facilitate the sharing of neuroimaging data within the neuroscience community. By publishing summaries of existing datasets, DataQuest enables researchers to: # Discover what data is available for collaborative research # Advertise your data to other researchers for potential collaborations # Discover which researchers may have the data you need # Discover which researchers are interested in your data. * Image quality: The approach to assessing the inherent quality of an image is to measure how distorted the image is. Using what are referred to as no-reference or blind metrics, one can measure the degree to which an image is distorted. * Content-based image retrieval: NIRV (NeuroImagery Retrieval & Visualization) is a work environment for advanced querying over imagery. NIRV will have a Java-based front-end for users to issue queries, run processing algorithms, review results, visualize imagery and assess image quality. NIRV interacts with an image repository such as NeuroServ. Users can also register images and will soon be able to filter searches based on image quality. | brain, data, diffusion tensor image, distorted, human, imagery, image, informatics, investigator, laboratory, magnetic resonance image, mapping, neuroscience, structural, visualization, neuroimaging | Human Brain Project ; MITRE Technology Program ; NSF ; NIMH R01-MH64417 |
nif-0000-10469 | http://neuroinformatics.mitre.org/ | SCR_006508 | Neuroinfomatics at MITRE, Neuroinformatics: Exploring the Human Brain | 2026-08-06 09:26:36 | 0 | |||||||
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ResearchMatch Resource Report Resource Website 100+ mentions |
ResearchMatch (RRID:SCR_006387) | ResearchMatch | patient registry, people resource, data or information resource, portal, community building portal | Free and secure registry to bring together two groups of people who are looking for one another: (1) people who are trying to find research studies, and (2) researchers who are looking for people to participate in their studies. It has been developed by major academic institutions across the country who want to involve you in the mission of helping today''''s studies make a real difference for everyone''''s health in the future. Anyone can join ResearchMatch. Many studies are looking for healthy people of all ages, while some are looking for people with specific health conditions. ResearchMatch can help ''''match'''' you with any type of research study, ranging from surveys to clinical trials, always giving you the choice to decide what studies may interest you. | recruit, volunteer, clinical research, clinical, recruitment registry, registry, patient, clinical study, clinical trial, survey |
is related to: Clinical and Translational Science Awards Consortium has parent organization: Vanderbilt University; Tennessee; USA |
Healthy, Specific health condition | NIH ; NCATS UL1TR000445; NCRR 1U54RR032646-01 |
PMID:22104055 | nlx_152168 | SCR_006387 | Research Match | 2026-08-06 09:26:34 | 180 | |||||
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Comparative Toxicogenomics Database (CTD) Resource Report Resource Website 1000+ mentions |
Comparative Toxicogenomics Database (CTD) (RRID:SCR_006530) | CTD | service resource, production service resource, data analysis service, data or information resource, analysis service resource, database | A public database that enhances understanding of the effects of environmental chemicals on human health. Integrated GO data and a GO browser add functionality to CTD by allowing users to understand biological functions, processes and cellular locations that are the targets of chemical exposures. CTD includes curated data describing cross-species chemical–gene/protein interactions, chemical–disease and gene–disease associations to illuminate molecular mechanisms underlying variable susceptibility and environmentally influenced diseases. These data will also provide insights into complex chemical–gene and protein interaction networks. | environment, chemical, disease, gene, pathway, protein, interaction, animal model, ontology, annotation, toxin, ontology or annotation browser, FASEB list |
is used by: DisGeNET is used by: NIF Data Federation is listed by: 3DVC is listed by: Gene Ontology Tools is related to: PharmGKB Ontology is related to: Gene Ontology is related to: BioRAT is related to: Integrated Gene-Disease Interaction is related to: OMICtools is related to: Integrated Manually Extracted Annotation has parent organization: Mount Desert Island Biological Laboratory has parent organization: North Carolina State University; North Carolina; USA is parent organization of: Interaction Ontology |
Pfizer ; American Chemistry Council ; NIEHS ES014065; NIEHS R01 ES019604; NCRR P20 RR016463; NIEHS U24 ES033155 |
PMID:16902965 PMID:16675512 PMID:14735110 PMID:12760826 |
Free, Freely available | OMICS_01578, nif-0000-02683, r3d100011530 | http://ctd.mdibl.org, https://doi.org/10.17616/R3KS7N | SCR_006530 | CTD - Comparative Toxicogenomics Database | 2026-08-06 09:26:36 | 1188 | ||||
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Human Nervous System Neuroanatomy Resource Report Resource Website |
Human Nervous System Neuroanatomy (RRID:SCR_006371) | Human Nervous System Neuroanatomy | image collection, data set, data or information resource | Data set of images of the human nervous system focusing on neuroanatomy. | central nervous system, neuroanatomy, brain, cerebellum, cranial nerve, hypothalamus, medulla, midbrain, muscle, nerve, pineal, pons, skull, spinal cord, thalamus, vein | is related to: Human Nervous System Disease and Injury | nlx_152124 | SCR_006371 | Human Nervous System - Neuroanatomy | 2026-08-06 09:26:34 | 0 | ||||||||
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National Kidney Disease Education Program Resource Report Resource Website 10+ mentions |
National Kidney Disease Education Program (RRID:SCR_006527) | NKDEP | resource, training material, narrative resource, data or information resource | Educational resource to increase awareness of kidney disease and its risk factors, improve early detection of chronic kidney disease (CKD), reduce the burden of CKD, facilitate identification of patients at greatest risk for progression to kidney failure, stress the importance of testing those at risk, promote evidence-based interventions to slow progression of CKD, and support the coordination of Federal responses to CKD. Target audiences include individuals at risk, particularly those with diabetes, high blood pressure, and a family history of kidney disease, and primary care providers. | kidney, risk factor, treatment, prevention, kidney failure, chronic kidney disease, nutrition, pediatric, intervention, disease-related portal |
is related to: NIDDK Information Network (dkNET) has parent organization: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is parent organization of: Creatinine Standardization Program is parent organization of: Glomerular Filtration Rate Calculators |
Kidney disease, Chronic kidney disease | NIDDK | nlx_152712 | SCR_006527 | NKDEP: National Kidney Disease Education Program | 2026-08-06 09:26:36 | 35 | ||||||
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HUDSEN Human Gene Expression Spatial Database Resource Report Resource Website |
HUDSEN Human Gene Expression Spatial Database (RRID:SCR_006325) | HUDSEN Database | storage service resource, atlas, service resource, data repository, data or information resource, database | Database of a set of standard 3D virtual models at different stages of development from Carnegie Stages (CS) 12-23 (approximately 26-56 days post conception) in which various anatomical regions have been defined with a set of anatomical terms at various stages of development (known as an ontology). Experimental data is captured and converted to digital format and then mapped to the appropriate 3D model. The ontology is used to define sites of gene expression using a set of standard descriptions and to link the expression data to an ''''anatomical tree''''. Human data from stages CS12 to CS23 can be submitted to the HUDSEN Gene Expression Database. The anatomy ontology currently being used is based on the Edinburgh Human Developmental Anatomy Database which encompasses all developing structures from CS1 to CS20 but is not detailed for developing brain structures. The ontology is being extended and refined (by Prof Luis Puelles, University of Murcia, Spain) and will be incorporated into the HUDSEN database as it is developed. Expression data is annotated using two methods to denote sites of expression in the embryo: spatial annotation and text annotation. Additionally, many aspects of the detection reagent and specimen are also annotated during this process (assignment of IDs, nucleotide sequences for probes etc). There are currently two main ways to search HUDSEN - using a gene/protein name or a named anatomical structure as the query term. The entire contents of the database can be browsed using the data browser. Results may be saved. The data in HUDSEN is generated from both from researchers within the HUDSEN project, and from the wider scientific community. The HUDSEN human gene expression spatial database is a collaboration between the Institute of Human Genetics in Newcastle, UK, and the MRC Human Genetics Unit in Edinburgh, UK, and was developed as part of the Electronic Atlas of the Developing Human Brain (EADHB) project (funded by the NIH Human Brain Project). The database is based on the Edinburgh Mouse Atlas gene expression database (EMAGE), and is designed to be an openly available resource to the research community holding gene expression patterns during early human development. | embryonic human, anatomy, developmental stage, development, brain, gene expression, optical projection tomography, carnegie stage, in situ hybridization, immunohistochemistry, gene, ontology, anatomical structure, protein expression, embryonic development, annotation, embryo |
is related to: EMAGE Gene Expression Database is related to: Human Developmental Biology Resource has parent organization: HUDSEN |
NIMH 5RO1MH070370; EU FP6 Research Infrastructure Action Structuring the European Research Area Programme contract 011993; Spanish Ministry of Science and Innovation BFU2008-04156; SENECA Foundation contract 04548 �GERM �06-10891 |
PMID:20979583 | Open unspecified license, Acknowledgement requested | nlx_152026 | SCR_006325 | HUDSEN Gene Expression Database | 2026-08-06 09:26:33 | 0 |
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