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https://github.com/eirikhoye/airr_tools

Github repository for the paper "T cell receptor repertoire sequencing reveals chemotherapy-driven clonal expansion in colorectal liver metastases" by Høye et al.

Proper citation: airr_tools (RRID:SCR_023297) Copy   

•   Source: SciCrunch Registry

https://www.sartorius.com/en/products/protein-analysis/octet-bli-detection/octet-systems-software

Octet BLI systems enable real-time, label-free analysis for determination of kinetics, affinity and antibody/protein quantitation. Includes Octet Analysis Studio for analysis of assays measuring kinetics and affinity values for drug-target binding and high-throughput kinetic screening for lead identification. Typical applications include kinetic analysis of protein-protein, protein-small molecules, antibody-antigen, antibody-VLP, antibody-Fc gamma receptors, including antibody-neonatal receptor (FcRn) interactions. Additional applications supported include lot release and stability analysis of drug molecules based on binding kinetics and affinity.

Proper citation: Thermo Fisher: Sartorius: Octet BLI systems (RRID:SCR_023267) Copy   

•   Source: SciCrunch Registry

https://bioscience.lonza.com/lonza_bs/JP/en/Transfection/p/000000000000276883/4D-Nucleofector-X-Unit

One of four functional modules of 4D-Nucleofector System. It supports Nucleofection of various cell numbers cells in different formats.

Proper citation: Lonza: 4D Nucleofector X Unit (RRID:SCR_023155) Copy   

•   Source: SciCrunch Registry

https://www.cytivalifesciences.com/en/us/shop/chromatography/chromatography-systems/akta-pure-p-05844

Chromatography system for purification in research applications. Allows for customization due to its modular design with flow rate. Available with flow rate of up to 25 mL/min or flow rate of up to 150 mL/min. Offers more than 20 hardware options for custom system, including new UV monitor.Includes Air sensor L9;CELL 2 U KPL;Conductivity monitor C9n Cpl;Injection valve V9-Inj;Instrument control unit, I9, Äkta pure; Mixer M9;Pressure monitor R9-2 with pump restrictor; Pump P9 Cpl 2x; UV Monitor U9-L Cpl;Fraction collector F9-R, Cytiva, CAT# 29011362;Superdex 200 increase 10/300 GL, Cytiva, CAT# 28-9909-44.

Proper citation: Cytiva: AKTA pure 25 L chromatography system (RRID:SCR_023461) Copy   

•   Source: SciCrunch Registry

https://www.vilber.com/company/

Life science company that develops and manufacture imaging and analyzing systems for fluorescence, chemiluminescence and bioluminescence applications.

Proper citation: Vilber (RRID:SCR_023580) Copy   

•   Source: SciCrunch Registry

https://www.nanoentek.com/theme/nanont2_en/shop/02/product01_view.php?it_id=1547538993

Bench top size cell counter that is designed to count cells and verify viability accurately and precisely, using standard trypan blue technique and provides image analysis for cell counting.

Proper citation: NanoEntek: EVE Automated Cell Counter (RRID:SCR_023459) Copy   

•   Source: SciCrunch Registry

https://github.com/imagej/pyimagej

Software provides set of wrapper functions for integration between ImageJ2 and Python. Supports original ImageJ API and data structures. Used to combine ImageJ and ImageJ2 with other tools available from Python software ecosystem, including NumPy, SciPy, scikit-image, CellProfiler, OpenCV, ITK and many more.

Proper citation: PyImageJ (RRID:SCR_023336) Copy   

•   Source: SciCrunch Registry

https://lifesciences.tecan.com/microplate-washers-hydrospeed?p=tab--1

Advanced plate washer, designed for quick, parallel washing of entire 96- and 384-well plates. This avoids time differences between wells for uniform results. Provides full control of wash power for optimized washing of cells, beads and ELISAs. Equipped with 96 and 384 indexing wash head and optimized magnetic carriers.

Proper citation: Tecan: HydroSpeed plate washer (RRID:SCR_023457) Copy   

•   Source: SciCrunch Registry

https://www.diagenode.com/en/categories/bioruptor-shearing-device

Sonication system for optimal shearing of biological and chemical samples.

Proper citation: Diagenode: Bioruptor (RRID:SCR_023470) Copy   

•   Source: SciCrunch Registry

https://www.promega.com/resources/software-firmware/glomax-systems/glomax-discover-system-software/

System includes firmware and plate reader software for reading absorbance, fluorescence, or luminescence in 96-well plates.

Proper citation: GloMax Discover System Software and Firmware (RRID:SCR_023469) Copy   

•   Source: SciCrunch Registry

https://www.fasteris.com/en-us/NGS

Fasteris, the brand of Genesupport SA for all Life Science Services, provides Next Generation Sequencing and Sanger sequencing services.Offers customized approaches and consulting services at each step of your projects.

Proper citation: Fasteris Next Generation Sequencing Services (RRID:SCR_023421) Copy   

•   Source: SciCrunch Registry

https://www.fz-juelich.de/en

One of the largest interdisciplinary research centers in Europe for inspiring science exchange from all over the world. It is member of the Helmholtz Association.

Proper citation: Research Center Jülich; Jülich; Germany (RRID:SCR_023416) Copy   

•   Source: SciCrunch Registry

https://www.questionpro.de/

Survey software to design and host questionaires. Used as survey creator. Enables to choose from survey question types ranging from net promoter score questions for efficient customer satisfaction surveys to advanced multiple-choice and logic-based research questions.

Proper citation: QuestionPro (RRID:SCR_023309) Copy   

•   Source: SciCrunch Registry

https://www.hamamatsu.com/jp/en/product/life-science-and-medical-systems/digital-slide-scanner/C13220-01.html

NanoZoomer series is family of whole slide scanners that rapidly scan glass slides to convert them to digital data. NanoZoomer S360 is ideal for use in hospitals and clinical laboratories.

Proper citation: Hamamatsu: NanoZoomer S360 Digital slide scanner (RRID:SCR_023761) Copy   

•   Source: SciCrunch Registry

https://www.hamamatsu.com/jp/en/product/life-science-and-medical-systems/digital-slide-scanner/C13239-01.html

NanoZoomer series is family of whole slide scanners that rapidly scan glass slides to convert them to digital data. NanoZoomer S210 provides high performance capable of handling large number of slides.

Proper citation: Hamamatsu: NanoZoomer S210 Digital slide scanner (RRID:SCR_023760) Copy   

•   Source: SciCrunch Registry

https://sciex.com/

Manufacturer of mass spectrometry instrumentation used in biomedical and environmental applications. Originally started by scientists from the University of Toronto Institute for Aerospace Studies, it is now part of Danaher Corporation with the SCIEX R&D division still located in Toronto, Canada.

Proper citation: Sciex (RRID:SCR_023651) Copy   

•   Source: SciCrunch Registry

https://www.bdbiosciences.com/en-us/products/instruments/flow-cytometers/research-cell-analyzers/bd-facsymphony-a3

Fluorescence activated cell analyzing instrument by BD Biosciences. Allows for the simultaneous detection of up to 30 parameters and 28 colors.

Proper citation: BD Biosciences: FACSymphony A3 Cell Analyzer (RRID:SCR_023644) Copy   

•   Source: SciCrunch Registry

https://www.licor.com/bio/support/answer-portal/imaging-systems/odyssey-classic.html

Odyssey Classic Imaging System provides flexible, multifunctional platform to accommodate variety of applications. Western blot imager, plate reader, slide scanner, luminescence imager. Performs membrane-, plate-, gel-, and slide based assays.

Proper citation: LI-COR: Odyssey Classic Imager (RRID:SCR_023765) Copy   

•   Source: SciCrunch Registry

https://www.illumina.com/systems/sequencing-platforms/nextseq-1000-2000.html

Sequencing system supports range of methods such as exome sequencing, target enrichment, single-cell profiling.

Proper citation: Illumina: NextSeq 2000 system (RRID:SCR_023614) Copy   

•   Source: SciCrunch Registry

https://www.htximaging.com/htx-m5-sprayer

Sprayer builds on capabilities of HTX TM-Sprayer providing innovative M5 chassis, high velocity stage and heated sample holder drawer. Sample plate holder is mounted on drawer mechanism to allow easy loading of samples, better protection of user and better alignment of various plate types. New High-Velocity XY stage allows nozzle displacement speed of up to 5,600mm/min and expands process range. Super dry spray can be achieved at high flow rates of solvent further improving instrument performance. E/Z trough gutter design improves chemical containement and is easy to remove and clean. Bulkhead connectors are directly mounted on it to also allow easy access to in line filter.

Proper citation: HTXImaging: M5 Sprayer (RRID:SCR_023733) Copy   

•   Source: SciCrunch Registry