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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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CAMP Resource Report Resource Website 1+ mentions |
CAMP (RRID:SCR_023981) | software library, software toolkit, software resource | Software multi-purpose reflection library developped by Technogerma Systems France and then by Tegesoft. Provides extra layer of flexibility to programs, and allows them to fully expose their data structures at runtime. | multi-purpose reflection library | is listed by: Debian | Free, Available for download, Freely available | https://sources.debian.org/src/camp/ | SCR_023981 | camp | 2026-08-06 09:30:17 | 1 | ||||||||
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parallel-fastq-dump Resource Report Resource Website 1+ mentions |
parallel-fastq-dump (RRID:SCR_024150) | software library, software toolkit, software resource | Software wrapper to speed up downloading process by dividing the work into multiple threads. | wrapper, speed up downloading process, dividing the work into multiple threads, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/parallel-fastq-dump/ | SCR_024150 | 2026-08-06 09:30:20 | 7 | |||||||||
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GfaPy Resource Report Resource Website |
GfaPy (RRID:SCR_024030) | software library, software toolkit, software resource | Software library for handling sequence graphs in Python. | sequence graphs, Python | is listed by: Debian | PMID:28645150 | Free, Available for download, Freely available, | OMICS_19577 | https://sources.debian.org/src/gfapy/ | SCR_024030 | gfapy, Gfapy | 2026-08-06 09:30:14 | 0 | ||||||
|
OptimiR Resource Report Resource Website |
OptimiR (RRID:SCR_024149) | software library, software toolkit, software resource | Software miRSeq data alignment workflow. Used to integrate genetic information to assess the impact of variants on miRNA expression. Used for integrating genome wide genotype data into miRNA sequence alignment analysis. | miRSeq data alignment workflow, integrate genetic information, assess impact of variants, miRNA expression, integrating genome wide genotype data, miRNA sequence alignment analysis, | is listed by: Debian | PMID:30819774 | Free, Available for download, Freely available, | OMICS_33123 | https://sources.debian.org/src/optimir/ | SCR_024149 | optimir | 2026-08-06 09:30:16 | 0 | ||||||
|
ISMRMRD Resource Report Resource Website |
ISMRMRD (RRID:SCR_024043) | software library, software toolkit, software resource | Prerequisite for sharing magnetic resonance imaging reconstruction algorithms and code is a common raw data format. This repository describes such common raw data format, which attempts to capture the data fields that are required to describe the magnetic resonance experiment with enough detail to reconstruct images. The repository also contains a C/C++ library for working with the format. | ISMRM Raw data format, C/C++ library for working with the format, | is listed by: Debian | PMID:26822475 | Free, Available for download, Freely available, | https://sources.debian.org/src/ismrmrd/ | SCR_024043 | ismrmrd, ISMRM Raw Data Format | 2026-08-06 09:30:14 | 0 | |||||||
|
Phyx Resource Report Resource Website 1+ mentions |
Phyx (RRID:SCR_024164) | software library, software toolkit, software resource | Software phylogenetic tools for unix. Used to perform phylogenetics analyses on trees and sequences. Collection of programs written in C ++ to explore, manipulate, analyze and simulate phylogenetic objects. | phylogenetic tools for unix, perform phylogenetics analyses on trees and sequences, C ++, explore phylogenetic objects, manipulate phylogenetic objects, analyze and simulate phylogenetic objects, | is listed by: Debian | PMID:28174903 | Free, Available for download, Freely available, | https://sources.debian.org/src/phyx/ | SCR_024164 | 2026-08-06 09:30:16 | 1 | ||||||||
|
qtltools Resource Report Resource Website 10+ mentions |
qtltools (RRID:SCR_024200) | software library, software toolkit, software resource | Software tool set for molecular Quantitative Trait Loci discovery and analysis. Allows to go from raw sequence data to collection of molecular Quantitative Trait Loci in few easy-to-perform steps. | molecular Quantitative Trait Loci, QTL discovery and analysis, | is listed by: Debian | PMID:28516912 | Free, Available for download, Freely available, | OMICS_18457 | https://sources.debian.org/src/qtltools/ | SCR_024200 | 2026-08-06 09:30:17 | 41 | |||||||
|
Plastimatch Resource Report Resource Website 1+ mentions |
Plastimatch (RRID:SCR_024168) | software library, software toolkit, software resource | Open source software for image computation with main focus on high performance volumetric registration, segmentation, and image processing of volumetric medical images. | image computation, volumetric registration, segmentation, image processing, volumetric medical images, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/plastimatch/, https://gitlab.com/plastimatch/plastimatch | SCR_024168 | 2026-08-06 09:30:17 | 4 | |||||||||
|
pngquant Resource Report Resource Website |
pngquant (RRID:SCR_024169) | software library, software toolkit, software resource | Software command line utility and library for lossy compression of PNG images. The conversion reduces file sizes significantly and preserves full alpha transparency. Generated images are compatible with all web browsers and operating systems. | lossy compression of PNG images, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/pngquant/, https://github.com/kornelski/pngquant | SCR_024169 | 2026-08-06 09:30:20 | 0 | |||||||||
|
rgfa Resource Report Resource Website |
rgfa (RRID:SCR_024323) | software library, software toolkit, software resource | Ruby library for handling GFA files. | handling GFA files, | is listed by: Debian | Free, Available for download, Freely available, | OMICS_19578 | https://sources.debian.org/src/ruby-rgfa/ | SCR_024323 | 2026-08-06 09:30:21 | 0 | ||||||||
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qcumber Resource Report Resource Website |
qcumber (RRID:SCR_024203) | software library, software toolkit, software resource | Software for quality control, quality trimming, adapter removal and sequence content check of NGS data. | quality control, quality trimming, adapter removal, sequence content check, NGS data, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/qcumber/ | SCR_024203 | 2026-08-06 09:30:17 | 0 | |||||||||
|
picopore Resource Report Resource Website |
picopore (RRID:SCR_024161) | software library, software toolkit, software resource | Software tool for reducing the storage size of Oxford Nanopore Technologies datasets without loss of functionality. | reducing storage size, Oxford Nanopore Technologies datasets, without functionality loss, | is listed by: Debian | PMID:28413619 | Free, Available for download, Freely available, | https://sources.debian.org/src/picopore/ | SCR_024161 | 2026-08-06 09:30:16 | 0 | ||||||||
|
PHYLOViZ Resource Report Resource Website 50+ mentions |
PHYLOViZ (RRID:SCR_024162) | software library, software toolkit, software resource | Platform independent JAVA software for analysis of sequence based typing methods that generate allelic profiles and their associated epidemiological data.Phylogenetic inference and data visualization for sequence based typing methods. | JAVA, phylogenetic inference, data visualization, sequence based typing methods, generate allelic profiles and their associated epidemiological data, | is listed by: Debian | PMID:22568821 | Free, Available for download, Freely available, | https://sources.debian.org/src/phyloviz-core/ | SCR_024162 | 2026-08-06 09:30:17 | 74 | ||||||||
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CDK Resource Report Resource Website 1+ mentions |
CDK (RRID:SCR_023985) | software library, software toolkit, software resource | Open Source software modular Java libraries for cheminformatics. | Java libraries, cheminformatics, | is listed by: Debian | Free, Available for download, Freely available | https://sources.debian.org/src/cdk/ | SCR_023985 | cdk, Chemistry Development Kit | 2026-08-06 09:30:14 | 7 | ||||||||
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ImageTooth Resource Report Resource Website |
ImageTooth (RRID:SCR_024039) | software library, software toolkit, software resource | Software library to generate images for odontograms.Allows to choose between png or jpg images. | generate images for odontograms, generate images, odontograms | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/imagetooth/ | SCR_024039 | imagetooth | 2026-08-06 09:30:14 | 0 | ||||||||
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TaxonomyTree Resource Report Resource Website |
TaxonomyTree (RRID:SCR_024090) | software library, software toolkit, software resource | Software library used by other RDP tools.TaxonomyTree building and traversal utility classes. | RDP tools, taxonomy tree building and traversal utility classes, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/librdp-taxonomy-tree-java/ | SCR_024090 | librdp-taxonomy-tree-java | 2026-08-06 09:30:15 | 0 | ||||||||
|
Sort-Key-Top Resource Report Resource Website |
Sort-Key-Top (RRID:SCR_024092) | software library, software toolkit, software resource | Functions available from this module select the top n elements from a list using several common orderings and custom key extraction procedures. | select the top n elements from a list, custom key extraction procedures, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/libsort-key-top-perl/ | SCR_024092 | libsort-key-top-perl, Sort-Key-Top - select and sort top n elements | 2026-08-06 09:30:19 | 0 | ||||||||
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libStatGen Resource Report Resource Website |
libStatGen (RRID:SCR_024093) | software library, software toolkit, software resource | Software library as set of classes for creating statistical genetic programs. | creating statistical genetic programs | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/libstatgen/, https://github.com/statgen/libStatGen | SCR_024093 | C++ Library: libStatGen, libstatgen | 2026-08-06 09:30:15 | 0 | ||||||||
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ThreadPool Resource Report Resource Website |
ThreadPool (RRID:SCR_024094) | software library, software toolkit, software resource | Software C++ thread pool library. | C++ thread pool library | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/libthread-pool/ | SCR_024094 | Thread pool, libthread-pool | 2026-08-06 09:30:15 | 0 | ||||||||
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OpenCFU Resource Report Resource Website 1+ mentions |
OpenCFU (RRID:SCR_024142) | software library, software toolkit, software resource | Software to count cell colonies and other circular objects. Used to facilitate enumeration of colony forming unit. | count cell colonies, enumeration of colony forming unit, | is listed by: Debian | PMID:23457446 | Free, Available for download, Freely available, | OMICS_14951 | https://sources.debian.org/src/opencfu/ | SCR_024142 | opencfu | 2026-08-06 09:30:16 | 4 |
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