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University-affiliated center that promotes research in diabetes and related metabolic and endocrine disorders at Stanford University.
Proper citation: Stanford Diabetes Research Center (RRID:SCR_015856) Copy
http://www.ncbi.nlm.nih.gov/tools/cobalt/cobalt.cgi?link_loc=BlastHomeAd
COBALT is a multiple sequence alignment tool that finds a collection of pairwise constraints derived from conserved domain database, protein motif database, and sequence similarity, using RPS-BLAST, BLASTP, and PHI-BLAST. Pairwise constraints are then incorporated into a progressive multiple alignment. A Linux executable for COBALT, and CDD and PROSITE data used is available at ftp://ftp.ncbi.nlm.nih.gov/pub/agarwala/cobalt/ COBALT has reasonable runtime performance and alignment accuracy comparable to or exceeding that of other tools for a broad range of problems.
Proper citation: COBALT: Constraint-based Multiple Alignment Tool (RRID:SCR_004152) Copy
http://www.edanzediting.com/journal_advisor
A training service which offers English editorial support for primarily non-native English speaking scientific researchers. Users answer a questionairre concerning their progress with their manuscript and Edanz suggests which of its services users should utilize. Services include Journal Advisor, English Editing, Expert Scientific Review, Cover Letter Development, Review Editing, Abstract Development, Response Letter Edit and Manuscript Check, Author-guided Rewriting, and Reviewer Recommendation. Edanz also offers training workshops and seminars for non-native English speakers.
Proper citation: Edanz's journal advisor (RRID:SCR_014013) Copy
Project whose goal is to improve health care and lessen the global burden of TBI through the discovery of causal relationships between treatments and clinically meaningful outcomes. InTBIR seeks to encourage well-designed, hypothesis-driven studies that include the collection of high quality data followed by rigorous statistical analysis.
Proper citation: International Initiative for Traumatic Brain Injury Research (RRID:SCR_016237) Copy
Bibliography covering all publications related to the fast-growing field of biomedical literature and text mining. This forum for collecting, compiling and sharing is a one-stop resource, letting researchers find out who-does-what in the area and where it is published, bridging across the many discipline-specific venues in which biomedical text-mining papers are published. If you know of a relevant paper that is missing from BLIMP, or have an accepted-for-publication paper, PhD/MSc thesis or a technical report, that you believe is relevant to biomedical text mining, fill in the submission form. The fast-growing field of biomedical literature mining is highly-interdisciplinary. Publications appear in forums ranging from the SIGIR conferences (the ACM Special Interest group on Information Retrieval) to journals such as Nature and Science, with the whole range of bioinformatics forums in-between. To substantially contribute, one must know what was/is being done in this diverse area, and place the work in context - both biologically and computationally. Instead of starting a journal fully dedicated to biomedical literature mining, thus creating yet another publication venue, this site offers an alternative: It holds in one place a compilation of references to relevant papers that have been published or accepted for publication.
Proper citation: BLIMP: Biomedical LIterature Mining Publications (RRID:SCR_007112) Copy
THIS RESOURCE IS NO LONGER AVAILABLE,documented on February 1st, 2022. Instrument supplier providing eye tracking capabilities for behavioral labs as well as for MRI, MEG, and EEG research environments.
Proper citation: SR Research EyeLink Eye Trackers (RRID:SCR_009602) Copy
fNIR Imager 1100 is a new generation portable functional near-infrared (fNIR) imaging research tool capable of monitoring brain?s hemodynamics and thereby the cognitive state of the subject in natural environments. Neuroimaging Solution for Natural Environments: * fNIR is the only stand-alone and field-deployable technology able to determine localized brain activity. * fNIR can be readily integrated with other physiological and neurobehavioral measures that assess human brain activity, including eye tracking, pupil reflex, respiration and electrodermal activity. fNIR can also complement other techniques. * Studies have shown a positive correlation between a participant's performance and fNIR responses as a function of task load. * It has also been shown that fNIR can effectively monitor attention and working memory in real-life situations.
Proper citation: fNIR Devices (RRID:SCR_009623) Copy
http://metap.helmholtz-muenchen.de/metap2/
THIS RESOURCE IS NO LONGER IN SERVICE. Documented on April 5,2023. Software tool for processing in metabolomics experiments., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.
Proper citation: MetaP (RRID:SCR_014686) Copy
https://www.spscientific.com/AboutOurTrustedBrands/
Commercial organization located in Warminster, Pennsylvania, USA, part of SP Industries, Inc. Provides VirTis, FTS Systems, Hotpack, Hull, Genevac, and PennTech scientific equipment. Manufactures freeze drying/lyophilization, centrifugal evaporation and concentration, temperature control/thermal management, glassware washers, controlled environments, vial washing and tray loading machines., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.
Proper citation: SP Scientific (RRID:SCR_017367) Copy
https://www.bruker.com/about-us.html
Commercial organization located in Massachusetts, USA, for scientific instruments and analytical and diagnostic solutions. Bruker equipment can be used in life science molecular research, in applied and pharma applications,microscopy, nano-analysis and industrial applications. Provider of high-performance systems for cell biology, preclinical imaging, clinical phenomics and proteomics research, clinical microbiology, and for molecular pathology research.
Proper citation: Bruker Corporation (RRID:SCR_017365) Copy
https://www.hamamatsu.com/eu/en/index.html
Manufacturer of optical sensors including, photomultiplier tubes, electric light sources, and other optical devices and their applied instruments for scientific, technical and medical use.
Proper citation: Hamamatsu Photonics (RRID:SCR_017105) Copy
https://www.olympus-global.com/
Japanese manufacturer of optics and reprography products specializing in microscopes and thermometers.
Proper citation: Olympus (RRID:SCR_017564) Copy
Danish, privately owned company specializing in non-invasive stimulation systems for treatment of major depressive disorder and neuroscience research based on use of transcranial magnetic stimulation.
Proper citation: MagVenture (RRID:SCR_017563) Copy
Commercial organization providing laboratory solutions in the fields of psychophysiology, neuroscience, social science, life science, child and behavioral development. Offers a wide array of products and services including signal acquisition hardware used to collect a variety of measures including Cardiac Impedance, HRV, GSR/GSC, ECG/EKG, HR, BP, and EMG supplemented with software suite of analysis applications.
Proper citation: MindWare Technologies (RRID:SCR_016972) Copy
https://timothyspringer.org/files/tas/files/biacore3000-instrument.pdf
Biacore 3000 processing unit is an established, label-free system for detailed studies of biomolecular interactions. The system delivers comprehensive characterization of the interaction, answers questions about the rate constants, affinity, specificity, and determines the active concentration of components. The ability to recover and transfer interaction partners directly to MALDI targets for identification and further characterization makes the system highly applicable to fast identification of unknown interactants.
Proper citation: GE: Biacore 3000 Real Time Biomolecular Interaction Analyzer (RRID:SCR_018044) Copy
Commercial company that specializes in measurement science software, hardware and services. Their software products include a range of photogrammetric camera calibration, measurement and event logging software. Their hardware products include calibration cubes and underwater camera housings. Services include design, construction and calibration of vision measurement systems, software development and GIS consulting.
Proper citation: SeaGIS (RRID:SCR_001101) Copy
A commercial organization for pharmaceutical, biopharmaceutical, and medical device open-access capability and technology platform with global operations.
Proper citation: WuXi AppTec Laboratory Services (RRID:SCR_001217) Copy
http://www.cma.mgh.harvard.edu/
A center dedicated to developing and applying morphometric methods to biomedical imaging data such as high-resolution MRI. The lab uses automated and semi-automated software such that MRI brain images are segmented into anatomical regions of interest. Projects in both basic and applied brain research include research on strokes and tumors; medical image processing research includes shape analysis of anatomical brain regions and measurement and analysis of brain volumes.
Proper citation: MGH Center for Morphometric Analysis (RRID:SCR_000885) Copy
http://www.adinstruments.com/products/software/modules/neuro_explorer.php
THIS RESOURCE IS NO LONGER IN SERVICE, documented on May 19, 2018; A provider of computer-based data acquisition and analysis systems for life science. Products enable users to record and analyze life science data quickly and efficiently. ADInstruments product range is based on the PowerLab data acquisition system with LabChart software. The PowerLab system (also MacLab) is used in universities, hospitals, research institutes, pharmaceutical companies, contract research organizations and other private industry research sectors.
Proper citation: ADInstruments - Data Acquisition Systems for Life Science (RRID:SCR_001620) Copy
http://www.immundiagnostik.com
Commercial company that develops and provides laboratory diagnostics and other medical research products.
Proper citation: Immundiagnostik (RRID:SCR_001977) Copy
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