Tools   Select Another Resource Report Type

https://cran.r-project.org/web/packages/ggbreak/vignettes/ggbreak.html

Software package provides several scale functions to break down ‘gg’ plot into pieces and align them together with gap plot or without (wrap plot or cut plot) ignoring subplots. Package was first designed to set breakpoints for truncating plot to shrink outlier long branch of phylogenetic tree. Set Axis Break for ggplot2.

Proper citation: ggbreak (RRID:SCR_024824) Copy   

•   Source: SciCrunch Registry

https://CRAN.R-project.org/package=ggsurvfit

Software R package for flexible time-to-event figures creation. Used to create figures ready for publication.

Proper citation: ggsurvfit (RRID:SCR_025045) Copy   

•   Source: SciCrunch Registry

https://github.com/wilkelab/ggtext/

Software R package that enhances text rendering in ggplot2 by allowing the use of Markdown, HTML, and rich text formatting for annotations, labels, and titles in plots.

Proper citation: ggtext (RRID:SCR_026470) Copy   

•   Source: SciCrunch Registry

https://CRAN.R-project.org/package=ggsignif

Software package to indicate if two groups are significantly different. Used to add significance brackets to ggplots.

Proper citation: ggsignif (RRID:SCR_023047) Copy   

•   Source: SciCrunch Registry

https://CRAN.R-project.org/package=ComplexUpset

Software R package for visualization of intersecting sets. Used for quantitative analysis of sets, their intersections, and aggregates of intersections. Visualizes set intersections in matrix layout and introduces aggregates based on groupings and queries.

Proper citation: ComplexUpset (RRID:SCR_022752) Copy   

•   Source: SciCrunch Registry

https://CRAN.R-project.org/package=tidyverse

Software tool as collection of R packages designed for data science which share underlying design philosophy, grammar, and data structures. Packages work in harmony because they share common data representations and API design. Used in everyday data analyses.

Proper citation: tidyverse (RRID:SCR_019186) Copy   

•   Source: SciCrunch Registry

https://ggraph.data-imaginist.com/

Software tool as extension of ggplot2 aimed at supporting relational data structures such as networks, graphs, and trees. While it builds upon foundation of ggplot2 and its API it comes with its own self-contained set of geoms, facets, etc., as well as adding concept of layouts to grammar.

Proper citation: ggraph (RRID:SCR_021239) Copy   

•   Source: SciCrunch Registry

https://corybrunson.github.io/ggalluvial/

Software tool as ggplot2 extension for alluvial plots. Used to visualize frequency distributions over time or frequency tables involving several categorical variables. Requires user to specify dimensions, either as separate aesthetics or as key-value pairs, relies on separate layers (stats and geoms) to produce strata, alluvia, and alluvial segments called lodes and flows.

Proper citation: ggalluvial (RRID:SCR_021253) Copy   

•   Source: SciCrunch Registry

https://cran.r-project.org/web/packages/cowplot/index.html

Software R package as streamlined plot theme and plot annotations for ggplot2. Provides various features that help with creating publication quality figures with ggplot2, such as set of themes, functions to align plots and arrange them into complex compound figures, and functions that make it easy to annotate plots and or mix plots with images.

Proper citation: cowplot (RRID:SCR_018081) Copy   

•   Source: SciCrunch Registry

Issue

https://biit.cs.ut.ee/clustvis/

Web user interface for visualizing clustering of multivariate data. Web server allows users to upload their own data and create Principal Component Analysis plots and heatmaps.

Proper citation: ClustVis (RRID:SCR_017133) Copy   

•   Source: SciCrunch Registry

https://github.com/LabTranslationalArchitectomics/RiboWaltz

Software R package for calculation of optimal P-site offsets, diagnostic analysis and visual inspection of ribosome profiling data. Works for read alignments based on transcript coordinates.

Proper citation: riboWaltz (RRID:SCR_016948) Copy   

•   Source: SciCrunch Registry

https://CRAN.R-project.org/package=ggeffects

Software R package to create tidy data frames of marginal effects for ggplot from model outputs. Used to compute marginal effects and adjusted predictions from statistical models and returns result as tidy data frames.

Proper citation: ggeffects (RRID:SCR_022496) Copy   

•   Source: SciCrunch Registry

https://CRAN.R-project.org/package=ggforce

Software R package providing missing functionality to ggplot2 through extension system introduced with ggplot2 v2.0.0.

Proper citation: ggforce (RRID:SCR_022575) Copy   

•   Source: SciCrunch Registry

https://CRAN.R-project.org/package=ggvenn

Software R package to draw venn diagram by ggplot2.

Proper citation: ggvenn (RRID:SCR_025300) Copy   

•   Source: SciCrunch Registry

https://CRAN.R-project.org/package=forestmodel

Software R package that produces forest plots using 'ggplot2' from models produced by functions such as stats::lm(), stats::glm() and survival::coxph().

Proper citation: forestmodel (RRID:SCR_025250) Copy   

•   Source: SciCrunch Registry

https://cran.r-project.org/web/packages/ggbiplot/readme/README.html

Software R package to provide ggplot2 implementation of biplot, simultaneous plot of scores for observations and vectors for variables for principal component-like analyses.

Proper citation: ggbiplot (RRID:SCR_025581) Copy   

•   Source: SciCrunch Registry

http://www.r-project.org/

Software environment and programming language for statistical computing and graphics. R is integrated suite of software facilities for data manipulation, calculation and graphical display. Can be extended via packages. Some packages are supplied with the R distribution and more are available through CRAN family.It compiles and runs on wide variety of UNIX platforms, Windows and MacOS.

Proper citation: R Project for Statistical Computing (RRID:SCR_001905) Copy   

•   Source: SciCrunch Registry

https://plot.ly

Web application to collaboratively create interactive graphs and share them with others. JavaScript toolbox plotly.js enables users with little to no web development skills to make scientific charts.

Proper citation: Plotly (RRID:SCR_013991) Copy   

•   Source: SciCrunch Registry

http://cran.r-project.org/

Network of ftp and web servers around world that store identical, up to date, versions of code and documentation for R. Package archive network for R programming language.

Proper citation: CRAN (RRID:SCR_003005) Copy   

•   Source: SciCrunch Registry

https://cran.r-project.org/web/packages/ggsci/vignettes/ggsci.html

Software R package that provides scientific-themed color palettes for ggplot2, offering visually appealing and publication-quality color schemes inspired by scientific journals and data visualization standards.

Proper citation: ggsci (RRID:SCR_026471) Copy   

•   Source: SciCrunch Registry