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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Specification URL Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
Symptoms of Lower Urinary Tract Dysfunction Research Network (LURN)
 
Resource Report
Resource Website
Symptoms of Lower Urinary Tract Dysfunction Research Network (LURN) (RRID:SCR_014378) LURN resource A research consortium with the long term goal of developing and testing measurement tools to describe symptoms of lower urinary tract dysfunction (LUTD) in women and men. The group plans to study targeted populations of patients with LUTD in order to expand our understanding of the causes of symptoms and common ways that symptoms change over time. The researchers will also collect biosamples from patients for current and future study of LUTD. lower urinary tract, dysfunction, research, consortium, lutd, symptom, biosample is listed by: NIDDK Information Network (dkNET)
is listed by: NIDDK Research Resources
is listed by: Collaborating for the Advancement of Interdisciplinary Research in Benign Urology
NIDDK 1U01DK097776 SCR_014378 Symptoms of Lower Urinary Tract Dysfunction Research Network 2026-08-01 12:05:01 0
Microfluidic device to attain high spatial and temporal control of oxygen
 
Resource Report
Resource Website
Microfluidic device to attain high spatial and temporal control of oxygen (RRID:SCR_017131) instrument resource Device to control spatial and temporal variations in oxygen tensions to better replicate in vivo biology. Consists of three parallel connected tissue chambers and oxygen scavenger channel placed adjacent to these tissue chambers. Provides consistent control of spatial and temporal oxygen gradients in tissue microenvironment and can be used to investigate important oxygen dependent biological processes present in cancer, ischemic heart disease, and wound healing. device, instrument, control, spatial, temporal, variation, oxygen, tension, tissue, microenvironment NCATS UH3 TR00048;
NCI R01 CA170879;
NIDDK UC4 DK104202;
NSF DGE-1143954
PMID:30571786 SCR_017131 2026-08-01 12:05:53 0
University of Colorado Diabetes Research Center
 
Resource Report
Resource Website
University of Colorado Diabetes Research Center (RRID:SCR_022897) nonprofit organization Center to facilitate diabetes research at University of Colorado by integrating interdisciplinary basic, translational, and clinical diabetes research base; providing infrastructure and resources that are indispensable for continued discovery and progress towards diabetes research and developing improved prediction and disease prevention;providing P&F and enrichment programs to support DRC investigators and their trainees, and recruit new and young investigators into diabetes research. diabetes, clinical diabetes research, infrastructure and resources is related to: University of Colorado Denver; Colorado; USA
is related to: University of Colorado Anschutz Medical Campus Diabetes Research Center Disease Modeling Core Facility
is related to: University of Colorado Anschutz Medical Campus Diabetes Research Center Clinical Resource Core Facility
is related to: University of Colorado Anschutz Medical Campus Diabetes Research Center Tissue Procurement and Processing Core Facility
is related to: University of Colorado Anschutz Medical Campus Diabetes Research Center Cell and Tissue Analysis Core Facility
has parent organization: University of Colorado; Colorado; USA
NIDDK P30DK116073 SCR_022897 2026-08-01 12:08:02 0
North Carolina Diabetes Research Center
 
Resource Report
Resource Website
North Carolina Diabetes Research Center (RRID:SCR_022896) NCDRC nonprofit organization Interactive regional diabetes research community across four premiere research institutions in North Carolina, who currently garner over $70 million annually for support of their diabetes research: Duke University (Duke), The University of North Carolina at Chapel Hill (UNC), Wake Forest School of Medicine (WF), and North Carolina A&T State University (NC A&T State). NCDRC supports Research Cores that represent unique strengths at each institution. Interactive regional diabetes research community is parent organization of: North Carolina Diabetes Research Center Metabolomics Core Facility
is parent organization of: North Carolina Diabetes Research Center Advanced Clinical Study Methods Core Facility
is parent organization of: North Carolina Diabetes Research Center Genomics and Proteomics Core Facility
NIDDK P30DK124723 SCR_022896 2026-08-01 12:07:47 0
Chronic Renal Insufficiency Cohort Study
 
Resource Report
Resource Website
1+ mentions
Chronic Renal Insufficiency Cohort Study (RRID:SCR_009016) CRIC Study, CRIC biomaterial supply resource, material resource A prospective observational national cohort study poised to make fundamental insights into the epidemiology, management, and outcomes of chronic kidney disease (CKD) in adults with intended long-term follow up. The major goals of the CRIC Study are to answer two important questions: * Why does kidney disease get worse in some people, but not in others? * Why do persons with kidney disease commonly experience heart disease and stroke? The CRIC Scientific and Data Coordinating Center at Penn receives data and provides ongoing support for a number of Ancillary Studies approved by the CRIC Cohort utilizing both data collected about CRIC study participants as well as their biological samples. The CRIC Study has enrolled over 3900 men and women with CKD from 13 recruitment sites throughout the country. Following this group of individuals over the past 10 years has contributed to the knowledge of kidney disease, its treatment, and preventing its complications. The NIDDKwill be extending the study for an additional 5 years, through 2018. An extensive set of study data is collected from CRIC Study participants. With varying frequency, data are collected in the domains of medical history, physical measures, psychometrics and behaviors, biomarkers, genomics/metabolomics, as well as renal, cardiovascular and other outcomes. Measurements include creatinine clearance and iothalamate measured glomerular filtration rate. Cardiovascular measures include blood pressure, ECG, ABI, ECHO, and EBCT. Clinical CV outcomes include MI, ischemic heart disease-related death, acute coronary syndromes, congestive heart failure, cerebrovascular disease, peripheral vascular disease, and composite outcomes. The CRIC Study has delivered in excess of 150,000 bio-samples and a dataset characterizing all 3939 CRIC participants at the time of study entry to the NIDDKnational repository. The CRIC Study will also be delivering a dataset to NCBI''''s Database for Genotypes and Phenotypes. clinical, epidemiology, management, outcome, adult human, medical history, physical measure, psychometrics, behavior, renal, biomarker, genomics, gwas, kidney, data sharing, bibliography, observational cohort study, male, female, cardiovascular, heart, kidney, risk factor, metabolomics is listed by: One Mind Biospecimen Bank Listing
is listed by: NIDDK Information Network (dkNET)
is listed by: NIDDK Research Resources
is listed by: Diabetes Research Centers
is related to: NCBI database of Genotypes and Phenotypes (dbGap)
is related to: NIDDK Central Repository
is related to: AASK Clinical Trial and Cohort Study
has parent organization: University of Pennsylvania Perelman School of Medicine; Pennsylvania; USA
Chronic kidney disease, Cardiovascular disease NIDDK Proposals to carry out ancillary studies are welcome nlx_152758 SCR_009016 Chronic Renal Insufficiency Cohort (CRIC) Study 2026-08-01 12:10:52 2
University of Chicago Digestive Diseases Research Core Center Tissue Engineering and Cell Models Core
 
Resource Report
Resource Website
1+ mentions
University of Chicago Digestive Diseases Research Core Center Tissue Engineering and Cell Models Core (RRID:SCR_015604) TECM biomaterial supply resource, material resource Core that provides services such as a repository for intestinal cell lines, Tissue Engineering Models, experimental materials, and supplies for digestive disease research. TECM, tissue engineering, cell models is listed by: NIDDK Information Network (dkNET)
has parent organization: University of Chicago Digestive Diseases Research Core Center
is organization facet of: University of Chicago Digestive Diseases Research Core Center
digestive disease NIDDK P30 DK042086 Available to the research community SCR_015604 2026-08-01 12:10:58 1
Acute Liver Failure Study Group
 
Resource Report
Resource Website
Acute Liver Failure Study Group (RRID:SCR_001463) ALFSG biomaterial supply resource, material resource Clinical research network for gathering prospective data and bio-samples on acute liver failure in adults since 1998. Clinical histories and laboratory and outcome data are available. Sample types include serum, plasma, urine, DNA, and liver tissue. clinical network, research network, adult acute liver failure is listed by: One Mind Biospecimen Bank Listing
is listed by: NIDDK Information Network (dkNET)
is related to: Pediatric Acute Liver Failure Study
has parent organization: University of Texas Southwestern Medical Center; Texas; USA
Acute liver failure, Acute liver injury NIDDK 2U01DK058369 PMID:19524577 Free, Freely Available nlx_152690 http://www8.utsouthwestern.edu/utsw/cda/dept25203/files/89624.html SCR_001463 Acute Liver Failure Study Group (ALFSG), UT Southwestern Acute Liver Failure Study Group, Adult Acute Liver Failure Study Group 2026-08-01 12:10:44 0
Nuclear Receptor Signaling Atlas
 
Resource Report
Resource Website
100+ mentions
Nuclear Receptor Signaling Atlas (RRID:SCR_003287) NURSA biomaterial supply resource, material resource THIS RESOURCE IS NO LONGER IN SERVICE.Documented on February 25, 2022.Software tool as knowledge environment resource that accrues, develops, and communicates information that advances understanding of structure, function, and role in disease of nuclear receptors (NRs) and coregulators. It specifically seeks to elucidate roles played by NRs and coregulators in metabolism and development of metabolic disorders. Includes large validated data sets, access to reagents, new findings, library of annotated prior publications in field, and journal covering reviews and techniques.As of March 20, 2020, NURSA is succeeded by the Signaling Pathways Project (SPP). nuclear receptor, coregulator, metabolism, metabolic disorder, type 2 diabetes, obesity, osteoporosis, lipid dysregulation, cardiovascular disease, oncology, regenerative medicine, environmental agent, genomics, proteomics, reagent, ligand, microarray, gene expression, data set, data analysis service, nuclear receptor signaling, signaling, high through put screening, receptor, ligand, journal, molecule, affinity purification, q-pcr, chip-chip, animal model, antibody, cell line, primer, transcriptomine, clinical trial, disease, drug, data set is used by: NIF Data Federation
is used by: NIDDK Information Network (dkNET)
is recommended by: National Library of Medicine
lists: NURSA Transcriptomine
lists: STRING
lists: Nuclear Receptor Cistrome
is listed by: NIH Data Sharing Repositories
is listed by: NIDDK Research Resources
is listed by: NIDDK Information Network (dkNET)
is related to: dkCOIN
is related to: Integrated Manually Extracted Annotation
has parent organization: Baylor College of Medicine; Houston; Texas
Metabolic disorder, Type 2 diabetes mellitus, Obesity, Osteoporosis, Lipid dysregulation, Cardiovascular disease, Diabetes, Cancer NHLBI ;
NIEHS ;
NICHD ;
NIDDK DK097748
DOI:10.1101/401729 Free, Freely available nif-0000-03208 https://dknet.org/about/NURSA_Archive http://www.nursa.org SCR_003287 NURSA - Nuclear Receptor Signaling Atlas, NURSA - The Nuclear Receptor Signaling Atlas 2026-08-01 12:10:45 135
Antibody Watch
 
Resource Report
Resource Website
Antibody Watch (RRID:SCR_027424) knowledge base Text mining antibody specificity from literature. Helps researchers identify potential problems with antibody specificity. By mining the scientific literature and linking findings to Research Resource Identifiers (RRIDs), it provides alerts on antibodies that may yield unreliable results, supporting reproducibility in biomedical research. Text mining antibody specificity, identify potential problems with antibody specificity, identify potential problems, antibody specificity, antibody, scientific literature, Ministry of Science and Technology ;
Taiwan ;
NIDDK U24DK097771;
NIDA U24DA039832
PMID:34043624 Free, Freely available SCR_027424 2026-08-01 12:14:22 0
Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology
 
Resource Report
Resource Website
Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology (RRID:SCR_015320) organization portal, data or information resource, portal THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July,27,2022. Core facility that provides scientific and budgetary oversight for all CCEH activities. This includes training programs, high school summer internships, and and pilot and feasibility program for new projects. cancer research, administrative support, budgetary oversight, training programs is listed by: NIDDK Information Network (dkNET)
has parent organization: Fred Hutchinson Cancer Center
has organization facet: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Antibody Technology
has organization facet: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Arnold Library
has organization facet: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Bioinformatics Resource
has organization facet: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Comparative Medicine
has organization facet: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Electron Microscopy
has organization facet: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Experimental Histopathology Shared Resource
has organization facet: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Flow Cytometry
has organization facet: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Genomics Shared Resource
has organization facet: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Glassware Services
has organization facet: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Proteomics Resource
has organization facet: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Research Freezers and Sample Storage Resource
has organization facet: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Scientific Imaging
has organization facet: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Specimen Processing/Research Cell Bank
is organization facet of: Hematology Centers
cancer NIDDK P30DK056465 THIS RESOURCE IS NO LONGER IN SERVICE SCR_015922 SCR_015320 2026-08-02 09:06:59 0
PICRUSt2
 
Resource Report
Resource Website
100+ mentions
PICRUSt2 (RRID:SCR_022647) simulation software, software resource, software application Software for predicting functional abundances based only on marker gene sequences.Used for prediction of metagenome functions. Contains updated and larger database of gene families and reference genomes, provides interoperability with any operational taxonomic unit (OTU)-picking or denoising algorithm, and enables phenotype predictions. Allows addition of custom reference databases. predicting functional abundances, marker gene sequences, metagenome functions prediction is related to: PICRUSt NSF IOS CAREER 1942647;
NIDDK U54DK102557;
NIDDK R24DK110499;
NSERC ;
GlaxoSmithKline
PMID:32483366 Free, Available for download, Freely available https://github.com/picrust/picrust2 SCR_022647 Phylogenetic Investigation of Communities by Reconstruction of Unobserved States 2026-08-02 09:08:27 368
University of Michigan Center for Gastrointestinal Research
 
Resource Report
Resource Website
University of Michigan Center for Gastrointestinal Research (RRID:SCR_015605) UMCGR organization portal, data or information resource, portal Center whose goal is to investigate signal transduction mechanisms regulating homeostasis and GI disorders. Their approach includes studies on genetics and gene regulation, cellular signaling pathways, receptors and ion channels. UMCGR, gastrointestinal research, GI functions, homeostasis, cellular signaling pathway, gene regulation is listed by: NIDDK Information Network (dkNET)
is parent organization of: University of Michigan Center for Gastrointestinal Research Protein Localization, Identification and Folding Core
is parent organization of: University of Michigan Center for Gastrointestinal Research In Vivo Animal and Human Studies Core
is parent organization of: University of Michigan Center for Gastrointestinal Research Molecular Biology Core
is parent organization of: University of Michigan Center for Gastrointestinal Research Microbiome and Metabolomics Core
has organization facet: University of Michigan Center for Gastrointestinal Research Protein Localization, Identification and Folding Core
has organization facet: University of Michigan Center for Gastrointestinal Research In Vivo Animal and Human Studies Core
has organization facet: University of Michigan Center for Gastrointestinal Research Molecular Biology Core
has organization facet: University of Michigan Center for Gastrointestinal Research Microbiome and Metabolomics Core
is organization facet of: Digestive Disease Centers
digestive disease NIDDK P30 DK034933 Available to affiliated researchers SCR_015605 2026-08-02 09:07:10 0
Machine Learning Made Easy
 
Resource Report
Resource Website
1+ mentions
Machine Learning Made Easy (RRID:SCR_024439) MLme software toolkit, software resource Software toolkit for Machine Learning Driven Data Analysis. Simplifies machine learning for data exploration, visualization and analysis. Machine Learning Driven Data Analysis, Wings for Life Spinal Cord Research Foundation ;
NIDDK R01 DK127673;
Federal Ministry of Education and Research of Germany ;
Swiss National Science Foundation
PMID:37461685 Free, Available for download, Freely available SCR_024439 2026-08-02 09:09:05 1
PICRUSt
 
Resource Report
Resource Website
10+ mentions
PICRUSt (RRID:SCR_016855) PICRUSt simulation software, software resource, software application Software package to predict metagenome functional content from marker gene (e.g., 16S rRNA) surveys and full genomes. Used to predict which gene families are present and then combines gene families to estimate the composite metagenome. predict, metagenome, functional, content, DNA, sample, marker, gene, sequence, data, microbiome, 16S, RNA is related to: PICRUSt2 Canadian Institutes of Health Research ;
Canada Research Chairs program ;
Howard Hughes Medical Institute ;
NIDDK P01 DK078669;
NHGRI U01 HG004866;
NHGRI R01 HG004872;
Crohn’s and Colitis Foundation of America ;
Sloan Foundation ;
NHGRI R01 HG005969;
NSF CAREER DBI1053486;
ARO W911NF1110473
PMID:23975157 Free, Available for download, Freely available SCR_016856 SCR_016855 Phylogenetic Investigation of Communities by Reconstruction of Unobserved States, PICRUSt 2026-08-02 09:07:32 36
ReBATE
 
Resource Report
Resource Website
ReBATE (RRID:SCR_017139) software toolkit, software resource Open source software Python package to compare relief based feature selection algorithms used in data mining. Used for feature selection in any bioinformatics problem with potentially predictive features and target outcome variable, to detect feature interactions without examination of all feature combinations, to detect features involved in heterogeneous patterns of association such as genetic heterogeneity . compare, relief, feature, algorithm, data, mining, variable, heterogeneous, pattern, genetic has parent organization: University of Pennsylvania; Philadelphia; USA NIAID AI116794;
NIDDK DK112217;
NIEHS ES013508;
NEI EY022300;
NHLBI HL134015;
NLM LM009012;
NLM LM010098;
NLM LM011360;
NCATS TR001263;
Warren Center for Network and Data Science
PMID:30030120 Free, Available for download, Freely available https://epistasislab.github.io/ReBATE/ SCR_017139 Relief Based Algorithm Training Environment 2026-08-02 09:07:35 0
Motif Alteration Genome wide to Globally Investigate Elements
 
Resource Report
Resource Website
1+ mentions
Motif Alteration Genome wide to Globally Investigate Elements (RRID:SCR_021903) MAGGIE software toolkit, software resource Software Python package for identifying motifs mediating transcription factor binding and function. Links mutations of motif to changes of epigenomic feature without assuming linear relationship. Identifying motifs mediating transcription factor binding, identifying motifs mediating transcription factor function, motif mutations, epigenomic feature changes NIDDK R01 DK091183;
Foundation Leducq ;
Netherlands Organization for Scientific Research ;
Amsterdam Cardiovascular Sciences
PMID:32657363 Free, Available for download, Freely available SCR_021903 2026-08-02 09:08:19 3
MaAsLin2
 
Resource Report
Resource Website
100+ mentions
MaAsLin2 (RRID:SCR_023241) software toolkit, software resource SoftwareR package that identifies microbial taxa correlated with factors of interest using generalized linear models and mixed models.Used for efficiently determining multivariable association between clinical metadata and microbial meta'omic features. Microbiome Multivariable Associations with Linear Models, NSF DEB-2028280;
NIAID U19AI110820;
NHGRI R01HG005220;
NIDDK R24DK110499;
NIDDK U54DK102557
DOI:10.1371/journal.pcbi.1009442 Free, Available for download, Freely available https://huttenhower.sph.harvard.edu/maaslin/ SCR_023241 2026-08-02 09:08:54 170
TALOS-N
 
Resource Report
Resource Website
1+ mentions
TALOS-N (RRID:SCR_022800) software toolkit, software resource Software package for prediction of protein backbone and sidechain torsion angles from NMR chemical shifts. Prediction of protein backbone, sidechain torsion angles, NMR chemical shifts NIDDK PMID:23728592 Free, Available for download, Freely available SCR_022800 2026-08-02 09:08:44 1
ataqv
 
Resource Report
Resource Website
1+ mentions
ataqv (RRID:SCR_023112) software toolkit, software resource Software package for QC and visualization of ATAC-seq results. Used to examine aligned reads and report basic metrics, including reads mapped in proper pairs, optical or PCR duplicates, reads mapping to autosomal or mitochondrial references, ratio of short to mononucleosomal fragment counts, mapping quality, various kinds of problematic alignments. QC of ATAC-seq results, visualization of ATAC-seq results, examine aligned reads, mapping quality, NIDDK R01 DK-117960;
American Diabetes Association Pathway to Stop Diabetes ;
NHGRI T32 HG00040;
NIDDK T32 DK101357;
University of Michigan Rackham Predoctoral Fellowship
PMID:32213349 Free, Available for download, Freely available https://parkerlab.github.io/ataqv/demo/ SCR_023112 2026-08-02 09:08:39 6
mtradeR
 
Resource Report
Resource Website
mtradeR (RRID:SCR_022977) software toolkit, software resource Software R package implements Joint model with Matching and Regularization and simulation pipeline. Used to test association between taxa and disease risk, and adjusted for correlated taxa screened by pre-selection procedure in abundance and prevalence, individually. test association between taxa and disease risk, correlated taxa screening, taxa and disease risk NIDDK U24DK097771;
NCI CA21765;
American Lebanese Syrian Associated Charities
PMID:36123651 Free, Available for download, Freely available SCR_022977 Metagenomic TRajectory Analysis with Disease Endpoint and Risk factors 2026-08-02 09:08:34 0

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