zfishbook
Resource Report
Resource Website
1+ mentions
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zfishbook (RRID:SCR_006896)
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zfishbook
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biomaterial supply resource, material resource
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Collection of revertible protein trap gene-breaking transposon (GBT) insertional mutants in zebrafish with active or cryopreserved lines from initially identified lines. Open to community-wide contributions including expression and functional annotation and represents world-wide central hub for information on how to obtain these lines from diverse members of International Zebrafish Protein Trap Consortium (IZPTC) and integration within other zebrafish community databases including Zebrafish Information Network (ZFIN), Ensembl and National Center for Biotechnology Information.
Registration allows users to save their favorite lines for easy access, request lines from Mayo Clinic catalog, contribute to line annotation with appropriate credit, and puts them on optional mailing list for future zfishbook newletters and updates.
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gene-breaking transposon, expression-tagged, revertible mutation, gene, transposon, mutation, mutant, brain, muscle, skin, secretory, cardiac, brain line, muscle line, skin line, secretory line, cardiac line, plasmid, expression, functional annotation, gene-breaking transposon line, gene-break transposon mutagenesis, cell line, annotation, embryonic zebrafish, larval zebrafish, bio.tools
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is listed by: One Mind Biospecimen Bank Listing
is listed by: Debian
is listed by: bio.tools
is related to: Addgene
is related to: Zebrafish International Resource Center
has parent organization: Mayo Clinic Minnesota; Minnesota; USA
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Mayo Clinic Cancer Center ;
Mayo Foundation ;
NHGRI HG006431;
NIDA DA14546;
NIGMS GM63904 |
PMID:22067444 |
Free, Freely available |
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biotools:zfishbook, nlx_151613 |
https://bio.tools/zfishbook |
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SCR_006896 |
SciCrunch Registry |
book, z fish book, zfishbook, fish, z |
2026-10-24 12:51:30 |
4 |
BioPortal
Resource Report
Resource Website
100+ mentions
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BioPortal (RRID:SCR_002713)
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BioPortal
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controlled vocabulary, data or information resource, data repository, ontology, repository, service resource, storage service resource
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Open repository of biomedical ontologies that provides access via Web browsers and Web services to ontologies. It supports ontologies in OBO format, OWL, RDF, Rich Release Format (RRF), Protege frames, and LexGrid XML. Functionality includes the ability to browse, search and visualize ontologies as well as to comment on, and create mappings for ontologies. Any registered user can submit an ontology. The NCBO Annotator and NCBO Resource Index can also be accessed via BioPortal. Additional features: * Add Reviews: rate the ontology according to several criteria and describe your experience using the ontology. * Add Mappings: submit point-to-point mappings or upload bulk mappings created with external tools. Notification of new Mappings is RSS-enabled and Mappings can be browsed via BioPortal and accessed via Web services. * NCBO Annotator: Tool that tags free text with ontology terms. NCBO uses the Annotator to generate ontology annotations, creating an ontology index of these resources accessible via the NCBO Resource Index. The Annotator can be accessed through BioPortal or directly as a Web service. The annotation workflow is based on syntactic concept recognition (using the preferred name and synonyms for terms) and on a set of semantic expansion algorithms that leverage the ontology structure (e.g., is_a relations). * NCBO Resource Index: The NCBO Resource Index is a system for ontology based annotation and indexing of biomedical data; the key functionality of this system is to enable users to locate biomedical data linked via ontology terms. A set of annotations is generated automatically, using the NCBO Annotator, and presented in BioPortal. This service uses a concept recognizer (developed by the National Center for Integrative Biomedical Informatics, University of Michigan) to produce a set of annotations and expand them using ontology is_a relations. * Web services: Documentation on all Web services and example code is available at: BioPortal Web services.
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biomedical, thesaurus, ontology mapping, annotation, metadata standard, ontology repository, portal, web service, obo, owl, rdf, rrf protege frame, lexgrid xml
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lists: MeGO
lists: Porifera Ontology
lists: EnvO
lists: Research Network and Patient Registry Inventory Ontology
lists: Semantic DICOM Ontology
lists: Time Event Ontology
lists: Variation Ontology
lists: Vertebrate Skeletal Anatomy Ontology
lists: Epoch Clinical Trial Ontology
lists: Gazetteer
lists: Human Disease Ontology
lists: Information Artifact Ontology
lists: NCBITaxon
lists: Amphibian Taxonomy Ontology
lists: Anatomic Pathology Lexicon
lists: HIV ontology
lists: International Classification of Primary Care - 2 PLUS
lists: Mathematical Modelling Ontology
lists: Nursing Interventions Classification
lists: Phylogenetic Ontology
lists: Bleeding History Phenotype Ontology
lists: Body System Terms from ICD11
lists: Synthetic Biology Open Language Visual Ontology
lists: Teleost Anatomy Ontology
lists: Teleost Taxonomy Ontology
lists: ECO
lists: Bioassay Ontology
lists: RightField
lists: Gene Ontology
lists: HGNC
lists: Interaction Ontology
lists: International Classification for Nursing Practice
lists: Spider Ontology
lists: Vertebrate Trait Ontology
lists: Mental Functioning Ontology
lists: Ascomycete Phenotype Ontology
lists: Beta Cell Genomics Ontology
lists: Biological Collections Ontology
lists: Chemical Methods Ontology
lists: Chemical Information Ontology
lists: Common Anatomy Reference Ontology
lists: Experimental Conditions Ontology
lists: Dictyostelium Discoideum Anatomy Ontology
lists: Fission Yeast Phenotype Ontology
lists: Fly Taxonomy
lists: FlyBase Controlled Vocabulary
lists: Hymenoptera Anatomy Ontology
lists: Influenza Ontology
lists: Lipid Ontology
lists: Kinetic Simulation Algorithm Ontology
lists: Malaria Ontology
lists: FMA
lists: Minimal Anatomical Terminology
lists: NEMO Ontology
lists: Ontology for Genetic Interval
lists: Ontology for Parasite LifeCycle
lists: Ontology of Adverse Events
lists: Ontology of Medically Related Social Entities
lists: Ontology of Vaccine Adverse Events
lists: Rat Strain Ontology
lists: Plant Environmental Conditions
lists: Plant Trait Ontology
lists: Population and Community Ontology
lists: RNA Ontology
lists: Rat Strain Ontology
lists: Subcellular Anatomy Ontology
lists: Software Ontology
lists: Suggested Ontology for Pharmacogenomics
lists: Vertebrate Taxonomy Ontology
lists: PharmGKB Ontology
lists: Physico-Chemical Process
lists: International Classification for Patient Safety
lists: Adverse Event Reporting Ontology
lists: Experimental Factor Ontology
lists: Mass Spectrometry Ontology
lists: Master Drug Data Base Clinical Drugs
lists: Medaka Fish Anatomy and Development Ontology
lists: Medical Diagnostic Categories - Diagnosis Related Groups
lists: Medical Dictionary for Regulatory Activities
lists: Minimal Standard Terminology of Digestive Endoscopy
lists: Minimal Standard Terminology of Digestive Endoscopy - French
lists: Ontology of Physical Exercises
lists: Mosquito Gross Anatomy Ontology
lists: Systematized Nomenclature of Medicine - International Version
lists: Mosquito Insecticide Resistance Ontology
lists: Mouse Experimental Design Ontology
lists: Mouse Gross Anatomy and Development Ontology
lists: Systematized Nomenclature of Medicine - Clinical Terms
lists: Systems Chemical Biology and Chemogenomics Ontology
lists: Mouse Pathology Ontology
lists: NIF Cell Ontology
lists: NHS Quality Indicators
lists: Neural-Immune Gene Ontology
lists: Ontology of Physics for Biology
lists: Cell Type Ontology
lists: Xenopus Anatomy Ontology
lists: SO
lists: Ontology of Pneumology
lists: Open Biological and Biomedical Ontologies Relationship Types
lists: Biomedical Resource Ontology
lists: MGED Ontology
lists: Pharmacovigilance Ontology
lists: PhenX Phenotypic Terms
lists: Bioinformatics Web Service Ontology
lists: SysMO JERM Ontology of Systems Biology for Micro-Organisms
lists: MeSH
lists: PATO
lists: BFO
lists: MPO
lists: PR
lists: Cereal Plant Development Ontology
lists: PhenomeBLAST Ontology
lists: VIVO
lists: Computer Assisted Brain Injury Rehabilitation Ontology
lists: Computer Retrieval of Information on Scientific Projects Thesaurus
lists: NIFSTD
lists: Cell Line Ontology
lists: Student Health Record Ontology
lists: Zebrafish Anatomical Ontology
lists: Physical Medicine and Rehabilitation
lists: Randomized Controlled Trials Ontology
lists: Human Phenotype Ontology
lists: Read Codes Clinical Terms Version 3
lists: Reference Sequence Annotation
lists: Regulation of Gene Expression Ontolology
lists: Neurobehavior Ontology
lists: Regulation of Transcription Ontology
lists: Reproductive Trait and Phenotype Ontology
lists: Skin Physiology Ontology
lists: Vaccine Ontology
lists: OMIM
lists: MedlinePlus
lists: Adult Mouse Anatomy Ontology
lists: Bone Dysplasia Ontology
lists: Bone and Cartilage Tissue Engineering Ontology
lists: Botryllus schlosseri anatomy and development ontology
lists: EDAM Ontology
lists: LexGrid
lists: RxNorm
lists: Breast Cancer Grading Ontology
lists: Breast Tissue Cell Lines Ontology
lists: SBO
lists: Resource of Asian Primary Immunodeficiency Diseases Phenotype Ontology
lists: Brucellosis Ontology
lists: Sleep Domain Ontology
lists: C. elegans Development Vocabulary
lists: Physician Data Query
lists: C. elegans Gross Anatomy Vocabulary
lists: Plant Ontology
lists: C. elegans Phenotype Vocabulary
lists: CPTAC Proteomics Pipeline Infrastructure Ontology
lists: Cancer Research and Management ACGT Master Ontology
lists: Cancer Chemoprevention Ontology
lists: Cell Behavior Ontology
lists: Cereal Plant Gross Anatomy Ontology
lists: Cardiac Electrophysiology Ontology
lists: Cerebrotendinous Xanthomatosis Ontology
lists: Cell Cycle Ontology
lists: Cell Culture Ontology
lists: Cerrado concepts and plant community dynamics
lists: Clinical Signs and Symptoms Ontology
lists: Clusters of Orthologous Groups Analysis Ontology
lists: Computational Neuroscience Ontology
lists: BIRNLex
lists: Computer-Based Patient Record Ontology
lists: Congenital Heart Defects Ontology
lists: Drug Interaction Knowledge Base Ontology
lists: Healthcare Common Procedure Coding System
lists: Host Pathogen Interactions Ontology
lists: Human Dermatological Disease Ontology
lists: Solanaceae Phenotype Ontology
lists: Soy Ontology
lists: Spatial Ontology
lists: Surgical Secondary Events
lists: eagle-i research resource ontology
lists: Biological Pathways Exchange
lists: Autism Spectrum Disorder Phenotype Ontology
lists: BRENDA Tissue and Enzyme Source Ontology
lists: BioTop Ontology
lists: Family Health History Ontology
lists: International Classification of Diseases Version 9 - Clinical Modification
lists: BioModels Ontology
lists: Bilingual Ontology of Alzheimer
lists: BioPortal Metadata Ontology
lists: Biochemical Substructure Ontology
lists: Biodiversity Ontology
lists: Biological Imaging Methods Ontology
lists: International Classification of Functioning Disability and Health
lists: Biologie Hors Nomenclature
lists: International Classification of Primary Care
lists: Biomedical Research Integrated Domain Group Model
lists: KB Bio 101
lists: Bionutrition Ontology
lists: Artificial Intelligence Rheumatology Consultant System Ontology
lists: Leukocyte Surface Marker Ontology
lists: Cell Line Ontology by Mahadevan
lists: Cellular microscopy phenotype ontology
lists: ABA Adult Mouse Brain Ontology
lists: AEO
lists: African Traditional Medicine Ontology
lists: Alzheimer's disease ontology
lists: Amino Acid Ontology
lists: Amphibian Gross Anatomy Ontology
lists: Animal Natural History and Life History Ontology
lists: Coding Symbols for a Thesaurus of Adverse Reaction Terms
lists: Cognitive Atlas Ontology
lists: Common Terminology Criteria for Adverse Events
lists: Comparative Data Analysis Ontology
lists: Content Archive Resource Exchange Lexicon
lists: Crop Ontology
lists: Current Procedural Terminalogy Hierarchy
lists: Current Procedural Terminology
lists: DICOM Controlled Terminology
lists: Dataset processing
lists: Dengue Fever Ontology
lists: Dermatology Lexicon
lists: Diagnosis Ontology of Clinical Care Classification
lists: Diagnostic Ontology
lists: Disease core ontology applied to Rare Diseases
lists: Dispedia Core Ontology
lists: Drosophila Development Ontology
lists: Drosophila Gross Anatomy Ontology
lists: EDDA Study Design Terminology
lists: Electrocardiography Ontology
lists: Eligibility Feature Hierarchy
lists: Enzyme Mechanism Ontology
lists: Enzyme Reaction Ontology for partial chemical perspectives
lists: Epilepsy Ontology
lists: Loggerhead Nesting Ontology
lists: Fanconi Anemia Ontology
lists: Fire Ontology
lists: Flora Phenotype Ontology
lists: Fungal Gross Anatomy Ontology
lists: Human Developmental Anatomy Ontology abstract version 1
lists: G Protein-Coupled Receptor BioAssays Ontology
lists: Galen Ontology
lists: Gene Expression Ontology
lists: Gene Ontology Extension
lists: General Formal Ontology
lists: General Formal Ontology for Biology
lists: Genome Component Ontology
lists: Genomic Clinical Decision Support Ontology
lists: GeoSpecies Ontology
lists: Glycomics Ontology
lists: Habronattus Courtship Ontology
lists: Health Indicator Ontology
lists: Health Level Seven Reference Implementation Model Version 3
lists: Human Developmental Anatomy Ontology abstract version 2
lists: Human Developmental Anatomy Ontology timed version
lists: Human Interaction Network Ontology
lists: Human Physiology Simulation Ontology
lists: Logical Observation Identifier Names and Codes
lists: IMGT-ONTOLOGY
lists: Image and Data Quality Assessment Ontology
lists: Immune Disorder Ontology
lists: Infectious Disease Ontology
lists: InterNano Nanomanufacturing Taxonomy
lists: Interaction Network Ontology
lists: International Classification of External Causes of Injuries
lists: International Classification of Diseases Version 10
lists: International Classification of Diseases Version 10 - Clinical Modification
lists: International Classification of Diseases Version 10 - Procedure Coding System
lists: MR dataset acquisition
lists: Maize Gross Anatomy Ontology
lists: Major Histocompatibility Complex Ontology
lists: Medical image simulation
lists: Menelas Project Top-Level Ontology
lists: Mental State Assessment
lists: Metagenome Sample Vocabulary
lists: Metagenome and Microbes Environmental Ontology
lists: MicroRNA Ontology
lists: Microbial Culture Collection Vocabulary
lists: Microbial Typing Ontology
lists: Minimal Information about any Sequence Controlled Vocabularies
lists: Minimal Information about any Sequence Ontology
lists: NIF Dysfunction Ontlogy
lists: NIF Subcellular Ontology
lists: NMR-Instrument Component of Metabolomics Investigations Ontology
lists: Name Reaction Ontology
lists: NanoParticle Ontology
lists: National Cancer Institute Thesaurus
lists: National Drug Data File
lists: National Drug File - Reference Terminology
lists: Natural Products Ontology
lists: Neglected Tropical Disease Ontology
lists: Neomark Oral Cancer Ontology version 3
lists: Neomark Oral Cancer Ontology version 4
lists: Neural Motor Recovery Ontology
lists: NeuroMorpho.Org species ontology
lists: NeuroMorpho.Org species ontology old
lists: Non-Randomized Controlled Trials Ontology
lists: Nursing Care Coordination Ontology
lists: Ontological Knowledge Base Model for Cystic Fibrosis
lists: Ontology for Drug Discovery Investigations
lists: Ontology for General Medical Science
lists: Ontology for Genetic Disease Investigations
lists: Ontology for Genetic Susceptibility Factor
lists: Ontology for MicroRNA Target Prediction
lists: Symptom Ontology
lists: Ontology for Newborn Screening Follow-up and Translational Research
lists: Ontology of Alternative Medicine French
lists: Ontology of Biological and Clinical Statistics
lists: Ontology of Clinical Research
lists: Ontology of Core Data Mining Entities
lists: Ontology of Data Mining Investigations
lists: Pediatric Terminology
lists: Ontology of Experimental Variables and Values
lists: Ontology of General Purpose Datatypes
lists: Ontology of Geographical Region
lists: Ontology of Glucose Metabolism Disorder
lists: Ontology of Homology and Related Concepts in Biology
lists: Ontology of Language Disorder in Autism
lists: Orphanet Rare Disease Ontology
lists: Parasite Experiment Ontology
lists: Pathogen Transmission Ontology
lists: Pathogenic Disease Ontology
lists: Pharmacogenomic Relationships Ontology
lists: Physico-Chemical Methods and Properties
lists: Plant Anatomy
lists: Syndromic Surveillance Ontology
lists: Plant Structure Development Stage
lists: Portfolio Management Application
lists: Protein Modification Ontology
lists: Protein-Protein Interaction Ontology
lists: Proteomics Data and Process Provenance Ontology
lists: Provenance Ontology
lists: QUDT
lists: Quantitative Imaging Biomarker Ontology
lists: Radiology Lexicon
lists: Robert Hoehndorf Version of MeSH
lists: Role Ontology
lists: STATistics Ontology
lists: Sage Bionetworks Synapse Ontology
lists: Sample Processing and Separation Techniques Ontology
lists: Santa Barbara Coastal Observation Ontology
lists: Semantic Types Ontology
lists: Semantic Web for Earth and Environment Technology Ontology
lists: Semanticscience Integrated Ontology
lists: Single-Nucleotide Polymorphism Ontology
lists: Situation-Based Access Control Ontology
lists: Taxonomic Rank Vocabulary
lists: Taxonomy for Rehabilitation of Knee Conditions
lists: Terminological and Ontological Knowledge Resources Ontology
lists: Tick Gross Anatomy Ontology
lists: Tissue Microarray Ontology
lists: Traditional Medicine Constitution Value Set
lists: Traditional Medicine Meridian Value Sets
lists: Traditional Medicine Other Factors Value Set
lists: Traditional Medicine Signs and Symptoms Value Set
lists: Translational Medicine Ontology
lists: Tribolium Ontology
lists: Units Ontology
lists: Units of Measurement Ontology
lists: Upper-Level Cancer Ontology
lists: Vertebrate Homologous Organ Group Ontology
lists: Veterans Health Administration National Drug File
lists: Vital Sign Ontology
lists: WHO Adverse Reaction Terminology
lists: Web-Service Interaction Ontology
lists: Wheat Trait Ontology
lists: XEML Environment Ontology
lists: suicideo
lists: suicideonto
lists: Pseudogene
lists: Terminology for the Description of Dynamics
lists: Gene Regulation Ontology
lists: UBERON
lists: CHEBI
lists: Cognitive Paradigm Ontology
lists: Emotion Ontology
lists: Clinical Measurement Ontology
lists: Measurement Method Ontology
lists: NCI Thesaurus
lists: Ontology for Biomedical Investigations
lists: Biological Pathways Exchange
is listed by: Biositemaps
is listed by: FORCE11
is related to: Provisional Cell Ontology
has parent organization: National Center for Biomedical Ontology
has parent organization: Stanford University; Stanford; California
has parent organization: Stanford Center for Biomedical Informatics Research
is parent organization of: NCBO Annotator
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NIGMS U24 GM143402 |
PMID:19483092
PMID:21672956
PMID:18999306 |
Free, Available for download, Freely available |
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nif-0000-23346, r3d100012344 |
https://www.force11.org/node/4646, https://doi.org/10.17616/R3J362 |
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SCR_002713 |
SciCrunch Registry |
BioPortal Knowledgebase |
2026-10-24 12:44:46 |
363 |
