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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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QuickGO Resource Report Resource Website 500+ mentions |
QuickGO (RRID:SCR_004608) | QuickGO | controlled vocabulary, data access protocol, data or information resource, database, ontology, software resource, web service | A web-based browser for Gene Ontology terms and annotations, which is provided by the UniProtKB-GOA group at the EBI. It is able to offer a range of facilities including bulk downloads of GO annotation data which can be extensively filtered by a range of different parameters and GO slim set generation. The software for QuickGO is freely available under the Apache 2 license. QuickGO can supply GO term information and GO annotation data via REST web services. | gene, ontology, annotation, browser, visualization, search engine, slimmer-type tool, ontology or annotation browser, ontology or annotation search engine, ontology or annotation visualization, database or data warehouse, windows, mac os x, linux, unix, gold standard, bio.tools |
is listed by: OMICtools is listed by: Gene Ontology Tools is listed by: bio.tools is listed by: Debian is related to: Gene Ontology is related to: STRAP has parent organization: European Bioinformatics Institute |
BBSRC BB/E023541/1 | PMID:19744993 PMID:20157483 |
Apache License, v2, Free for academic use | biotools:quickgo, nlx_60318, OMICS_02276 | https://bio.tools/quickgo | SCR_004608 | Quick GO | 2026-09-12 12:56:14 | 556 | ||||
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SysMO JERM Ontology of Systems Biology for Micro-Organisms Resource Report Resource Website |
SysMO JERM Ontology of Systems Biology for Micro-Organisms (RRID:SCR_004569) | JERM | controlled vocabulary, data or information resource, ontology | An ontology to describe the entities and relationships in the SEEK database, a Systems Biology environment for the sharing and exchange of data and models. The SysMO-SEEK database contains the work of the SysMO consortium (Systems Biology of Micro-Organisms) https://seek.sysmo-db.org/ | owl |
is listed by: BioPortal has parent organization: SysMO-DB |
nlx_157602 | SCR_004569 | 2026-09-12 12:56:14 | 0 | |||||||||
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TRACK TBI Network Resource Report Resource Website |
TRACK TBI Network (RRID:SCR_004723) | TRACK TBI Network | data or information resource, knowledge environment, narrative resource, standard specification | Network evaluating consensus-based common data elements (CDE) for traumatic brain injury (TBI) and psychological health (TBI-CDE, www.commondataelements.ninds.nih.gov/TBI.aspx) while extensively phenotyping a cohort of TBI patients across the injury spectrum from concussion to coma. Institutions that participate in the TBI Network will be able to track the outcomes of patients through a 3, 6 and 12-month followup program and compare outcomes with other participating institutions. For the three acute care centers, patients were enrolled that presented to the emergency department within 24 hours of head injury and required computed tomography (CT). For the rehabilitation center, referrals from acute hospitals were enrolled. Patients were consented to participate in components: clinical profile; blood draws for measurement of proteomic and genomic markers; 3T MRI within 2 weeks; three-month Glasgow Outcome Scale-Extended (GOS-E); and six-month TBI-CDE Core outcome assessments. A web-enabled database, imaging repository, and biospecimen bank was developed using the TBI-CDE recommendations. A total of 605 patients were enrolled. Of these subjects, 88% had a GCS 13-15, 5% had a GCS 9-12, and 7% had a GCS of 8 or less. Three-month GOS-E''s were obtained for 78% of the patients. Comprehensive 6-month outcome measures, including PTSD assessment, are ongoing until September 2011. Blood specimens were collected from 450 patients. Initial CTs for 605 patients and 235 patients with 3T MRI studies were transferred to an imaging repository. The TRACK TBI Network will provide qualified institutions access to a web-based version of key forms in tracking TBI outcomes for Quality Improvement and institutional benchmarking. | traumatic brain injury, concussion, coma, psychological health, common data element, head injury, mri, computed tomography, post-traumatic stress disorder, clinical, neuroimage, genomic, proteomic, outcome data, clinical data, marker, blood, glasgow outcome scale-extended, one mind tbi, one mind ptsd, image, image collection, benchmark, biomaterial supply resource, database, outcome | is listed by: One Mind Biospecimen Bank Listing | Traumatic brain injury | NINDS ; NIDRR ; Defense and Veterans Brain Injury Center ; Defense Centers of Excellence for Psychological Health and Traumatic Brain Injury |
Access to a web-based version of key forms is available to qualified institutions. | nlx_143882 | http://www.tracktbi.net/tracktbi/ | SCR_004723 | Traumatic Brain Injury Network, Transforming Research and Clinical Knowledge in Traumatic Brain Injury Network, TBI Network, Transforming Research and Clinical Knowledge in Traumatic Brain Injury: Multicenter Implementation of the TBI Common Data Elements | 2026-09-12 12:56:16 | 0 | ||||
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National University of Malaysia; Selangor; Malaysia Resource Report Resource Website 1+ mentions |
National University of Malaysia; Selangor; Malaysia (RRID:SCR_004724) | UKM, NUM | university | UKM affirms integration of faith in Allah and constructive knowledge along with amalgamation of theory and practice as core fundamentals in advancement of knowledge, building of educated society and development of university. |
is parent organization of: ProLysED - Prokaryotic Lysis Enzymes Database is parent organization of: NRESTdb |
nlx_151798 | http://www.ukm.my/v3/ | SCR_004724 | Universiti Kebangsaan Malaysia, National University of Malaysia | 2026-09-12 12:56:16 | 3 | ||||||||
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ResearchGate: Research Jobs Resource Report Resource Website |
ResearchGate: Research Jobs (RRID:SCR_004641) | ResearchGate: Research Jobs | job resource | Job board for science professionals worldwide. You may search through international listings in science and research or post your job listing for free. Advanced filters are available and you may also research jobs by field. Currently, fields include: Agricultural Science, Anthropology, Biology, Chemistry, Computer Science, Design, Economics, Education, Engineering, Entertainment and Arts, Geoscience, History, Law, Linguistics, Literature, Mathematics, Medicine, Other, Philosophy, Physics, Political Science, Psychology, Religious Studies, Social Science, Space Science | employment, employment opportunity, science, research | has parent organization: ResearchGate | The community can contribute to this resource | nlx_143851 | SCR_004641 | 2026-09-12 12:56:15 | 0 | ||||||||
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BioPig Resource Report Resource Website 1+ mentions |
BioPig (RRID:SCR_004636) | BioPig | software resource | Software providing a framework for genomic data analysis using Apache Pig and Hadoop. | mapreduce/hadoop, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools has parent organization: Lawrence Berkeley National Laboratory |
PMID:24021384 | biotools:biopig, OMICS_01225 | https://bio.tools/biopig | SCR_004636 | 2026-09-12 12:56:15 | 2 | |||||||
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Johns Hopkins University; Undergraduate Neuroscience Program Resource Report Resource Website |
Johns Hopkins University; Undergraduate Neuroscience Program (RRID:SCR_004638) | data or information resource, degree granting program, department portal, organization portal, portal, training resource, undergraduate program resource | Undergraduate Program in Neuroscience offers broad overview of field, as well as more advanced training in one of four specialized areas: cellular and molecular, cognitive, computational, or systems neuroscience. | has parent organization: Johns Hopkins University; Maryland; USA | nlx_63501 | http://krieger.jhu.edu/neuroscience/undergraduate/index.html | SCR_004638 | JHU Undergraduate Neuroscience, Johns Hopkins University; Undergraduate Program in Neuroscience | 2026-09-12 12:56:15 | 0 | |||||||||
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Compugen Resource Report Resource Website 10+ mentions |
Compugen (RRID:SCR_004631) | CGEN | commercial organization | Drug discovery company providing pharma with protein and antibody therapeutics in the fields of Oncology and Immunology. | drug, diagnostic, protein therapeutics, target discovery, therapeutics, oncology, immunology, monoclonal antibody | Wikidata: Q5157220, grid.418916.3, nlx_63124, ISNI: 0000 0004 0506 4804 | https://ror.org/017vd4789 | SCR_004631 | Compugen Ltd | 2026-09-12 12:56:15 | 18 | ||||||||
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Jackson Laboratory Resource Report Resource Website 10000+ mentions |
Jackson Laboratory (RRID:SCR_004633) | JAX | institution | An independent, nonprofit organization focused on mammalian genetics research to advance human health. Their mission is to discover the genetic basis for preventing, treating, and curing human disease, and to enable research for the global biomedical community. Jackson Laboratory breeds and manages colonies of mice as resources for other research institutions and laboratories, along with providing software and techniques. Jackson Lab also conducts genetic research and provides educational material for various educational levels. | genomic, disease, mouse model, human disease, biomaterial manufacture |
is listed by: One Mind Biospecimen Bank Listing is affiliated with: Integrative Human Microbiome Project is related to: ScienceExchange is related to: Federation of International Mouse Resources is related to: MGI strains is related to: One Mind Biospecimen Bank Listing is related to: Beta Cell Biology Consortium is related to: Mouse Mutagenesis Center for Developmental Defects is related to: GenomeMUSter is parent organization of: Mouse Models For Alzheimer's Disease Research is parent organization of: Type 1 Diabetes Resource is parent organization of: MouseCyc is parent organization of: Special Mouse Strains Resource is parent organization of: Gene Weaver is parent organization of: Mouse Phenome Database (MPD) is parent organization of: Jackson Laboratory Cytogenetic Models Resource is parent organization of: Parkinson's Disease Mouse Model Resource is parent organization of: Eye mutant resource - The Jackson Laboratory is parent organization of: Brainbow mouse resource at Jackson Labs is parent organization of: Short Course on the Genetics of Addiction is parent organization of: JAX Cre Repository is parent organization of: Donate a strain to The Jackson Laboratory Repository is parent organization of: Jackson Laboratory Neurobiology is parent organization of: QTL Archive is parent organization of: Mouse Genome Informatics: The Gene Ontology Project is parent organization of: Mouse Genome Informatics (MGI) is parent organization of: Mouse Tumor Biology Database is parent organization of: Gene Expression Database is parent organization of: The Jackson Laboratory Hearing Research Program is parent organization of: JAX Mice: Neural Tube Defects is parent organization of: JAX Neuroscience Mutagenesis Facility is parent organization of: Induced Mutant Resource is parent organization of: Mouse Mutant Resource is parent organization of: Mouse Genome Database is parent organization of: Mutant Mouse Resource and Research Center is parent organization of: eMouseAtlas is parent organization of: GBRS is parent organization of: Jackson Laboratory Scientific Instrument Services Core Facility provides: Knockout Mouse Project Repository |
Types 1 diabetes, Type 2 diabetes, Diabetes, Cardiovascular diseases, Metabolic disease, Cancer, Rare disease, Alzheimer's disease, Demantia | Available to the research community, Available to the educational community | ISNI: 0000 0004 0374 0039, nlx_63162, grid.249880.f, Crossref funder ID: 100005946 | https://ror.org/021sy4w91 | SCR_004633 | JAX Lab, Jackson Lab | 2026-09-12 12:56:15 | 15196 | |||||
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FslAtlasIntegration Resource Report Resource Website |
FslAtlasIntegration (RRID:SCR_004634) | FslAtlasIntegration | data or information resource, narrative resource, wiki | FslAtlasIntegration is a documentation site for FSL coordinate reporting and atlas integration. Links to references are available to internal FMRIB systems. Some of this material is drawn from Matthew Brett''''s webpages on MNI-Talairach Atlas Differences and Localization in Brain Mapping. http://www.mrc-cbu.cam.ac.uk/Imaging/Common/mnispace.shtml | atlas, mri, template |
is related to: CBU Imaging Wiki has parent organization: Oxford Centre for Functional MRI of the Brain |
nlx_144317 | SCR_004634 | 2026-09-12 12:56:15 | 0 | |||||||||
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National Tsing Hua University; Hsinchu; Taiwan Resource Report Resource Website |
National Tsing Hua University; Hsinchu; Taiwan (RRID:SCR_004590) | NTHU | university | Research university in Hsinchu City, Taiwan. Public institution that traces its roots back to 1911, when it was established in Beijing as Tsing Hua Academy. |
is parent organization of: CPDB - the Circular Permutation Database is parent organization of: DBSubLoc - Database of protein Subcellular Localization is parent organization of: Neuron Navigator is parent organization of: Flycircuit is parent organization of: Professor Anne Chaos Website |
nlx_59919 | http://www.nthu.edu.tw/english/index.php | SCR_004590 | National Tsing Hua University; Hsinchu City; Taiwan, National Tsing Hua University | 2026-09-12 12:56:14 | 0 | ||||||||
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WSDbfetch (SOAP) Resource Report Resource Website 1+ mentions |
WSDbfetch (SOAP) (RRID:SCR_004593) | data access protocol, software resource, web service | WSDbfetch is a webservice implementation of Dbfetch, a generic DB retrieval system that allows you to retrieve entries from various up-to-date biological databases using entry identifiers or accession numbers. It aims to provide programmatic access for sequence retrieval. This involves a service running on a SOAP server responding to remote client invocations. This is equivalent to the CGI based dbfetch service and like the CGI service a request can return a maximum of 200 entries. | wsdl, service api, soap, gold standard |
is related to: EBI Dbfetch has parent organization: European Bioinformatics Institute |
nlx_58252 | SCR_004593 | WSDbfetch | 2026-09-12 12:56:14 | 1 | |||||||||
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Nonpareil Resource Report Resource Website 50+ mentions |
Nonpareil (RRID:SCR_004629) | Nonpareil | software resource | Estimate average coverage and create Nonpareil curves for metagenomic datasets. | is listed by: OMICtools | PMID:24123672 | OMICS_01419 | SCR_004629 | 2026-09-12 12:56:15 | 96 | |||||||||
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deStruct Resource Report Resource Website 1+ mentions |
deStruct (RRID:SCR_004747) | deStruct | software resource | A software tool for identifying structural variation in tumour genomes from whole genome illumina sequencing. | structural variation, genome, genomics |
is listed by: OMICtools has parent organization: Google Code |
Tumor, Cancer | Open unspecified license | OMICS_00314 | SCR_004747 | deStruct - Bioinformatics tool for identifying structural variation in tumour genomes | 2026-09-12 12:56:16 | 8 | ||||||
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Oklahoma Brain Tumor Foundation Resource Report Resource Website |
Oklahoma Brain Tumor Foundation (RRID:SCR_004748) | OKBTF | data or information resource, disease-related portal, patient-support portal, portal, topical portal | The Oklahoma Brain Tumor Foundation (OKBTF) is a nonprofit organization that provides education, advocacy and support for Oklahomans with brain tumors and their families to improve their quality of life and help find a cure. Founded by Nancy Thomason after the death of her son Cade Thomason to a brain stem PNET tumor on February 17, 2000, she vowed to fight the disease in honor and memory of her son Cade. OKBTF is dedicated to meeting the needs of Oklahoma families, caregivers and patients affected by primary brain or central nervous system tumors. We work to provide for needs through education, advocacy, research and service. Whatever your needs, whether financial, physical, mental or spiritual, we will work with you to fight the battle. Here you will find many of the services we offer in support of families just like yours, who are confused, hurting and just wanting straight answers. Feel free to browse around, get to know us, see what we are doing to help and send us your comments or questions... We are here for you. | brain, central nervous system, tumor, cancer, human | nlx_143892 | SCR_004748 | 2026-09-12 12:56:16 | 0 | ||||||||||
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Hema-Quebec Resource Report Resource Website 1+ mentions |
Hema-Quebec (RRID:SCR_004700) | nonprofit organization | Hema-Quebec''s mission is to efficiently provide adequate quantities of safe, optimal blood components, substitutes, human tissues and cord blood to meet the needs of all Quebecers; provide and develop expertise along with specialized and innovative services and products in the fields of transfusion medicine and human tissue transplantation. Hema-Quebec is driven by the commitment, support and recognition of its employees as well as the trust of its partners to remain the standard of quality and innovation with respect to the safe procurement of blood products, human tissues and stem cells. | is listed by: One Mind Biospecimen Bank Listing | Hema-Quebec Foundation | ISNI: 0000 0001 2111 8890, nlx_69414, grid.292497.3, Wikidata: Q3144906 | https://ror.org/008jvv944 | SCR_004700 | 2026-09-12 12:56:15 | 2 | |||||||||
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University of Colorado Denver; Colorado; USA Resource Report Resource Website 1+ mentions |
University of Colorado Denver; Colorado; USA (RRID:SCR_004662) | CU Denver | university | University of Colorado Denver is a public research university in Denver. It is part of the University of Colorado system. |
is related to: Clinical and Translational Science Awards Consortium is related to: University of Colorado Diabetes Research Center has parent organization: University of Colorado; Colorado; USA is parent organization of: Hanalyzer is parent organization of: PhenoGen Informatics is parent organization of: GeneSpeed- A Database of Unigene Domain Organization is parent organization of: University of Colorado School of Medicine; Colorado; USA is parent organization of: University of Colorado Denver Labs and Facilities is parent organization of: CU Denver iPSC Core is parent organization of: CU Denver Transgenic and Gene Targeting Core is parent organization of: CU Denver High Throughput and High Content Screening Core Facility is parent organization of: CU Denver Advanced Histology Services is parent organization of: U-Compare |
nlx_54335, GRID grid.241116.1; ISNI 0000000107903411; Crossref Funder ID 100010346; Wikidata Q1468161 | https://ror.org/02hh7en24 | SCR_004662 | University of Colorado Denver Anschutz Medical Campus, University of Colorado Health Sciences Center; Colorado; USA, University of Colorado Denver Anschutz Medical Campus;Colorado; USA, University of Colorado Health Sciences Center, University of Colorado Denver | 2026-09-12 12:56:15 | 1 | ||||||||
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PSP Association Resource Report Resource Website 1+ mentions |
PSP Association (RRID:SCR_004655) | PSP Association | nonprofit organization | The PSP Association is dedicated to the support of people with Progressive Supranuclear Palsy (PSP) and those who care for them. We also support those with the related, but rarer, disease Cortico Basal Degeneration (CBD). We fund research to better understand the possible causes of PSP and CBD, to find ways to achieve earlier and better diagnosis and to develop treatments that could potentially slow down, or even halt, the progression of these diseases. We support patients, families and carers through the services we offer on a UK-wide basis, through our Nurse Specialist helpline, our Local Support Groups, our publications (including the comprehensive Carers'' Information Pack) and our Annual Symposium for carers and therapists. We raise awareness of PSP and CBD on a local and national level and work in partnership with the relevant bodies and umbrella organisations in the UK to seek to make a positive difference to the lives of people with PSP and CBD. Registered charity numbers: England & Wales 1037087 / Scotland: SC041199. | progressive supranuclear palsy, cortico basal degeneration | grid.481174.f, Crossref funder ID: 501100008177, ISNI: 0000 0000 9330 6674, nlx_143855 | https://ror.org/05jmp0y43 | SCR_004655 | Progressive Supranuclear Palsy Association | 2026-09-12 12:56:15 | 2 | ||||||||
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AbundanceBin Resource Report Resource Website 1+ mentions |
AbundanceBin (RRID:SCR_004648) | AbundanceBin | software resource | An abundance-based software tool for binning metagenomic sequences, such that the reads classified in a bin belong to species of identical or very similar abundances. AbundanceBin also gives estimations of species abundances and their genome sizes -two important characteristic parameters for a microbial community. | metagenome, sequence |
is listed by: OMICtools has parent organization: Indiana University; Indiana; USA |
PMID:21385052 | Acknowledgement requested, Free, Public | OMICS_01471 | SCR_004648 | 2026-09-12 12:56:15 | 6 | |||||||
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Susan G. Komen for the Cure Resource Report Resource Website 10+ mentions |
Susan G. Komen for the Cure (RRID:SCR_004842) | Susan G. Komen | funding resource | Susan G. Komen for the Cure is the global leader of the breast cancer movement, having invested more than $1.9 billion since inception in 1982. As the world''s largest grassroots network of breast cancer survivors and activists, we''re working together to save lives, empower people, ensure quality care for all and energize science to find the cures. Thanks to events like the Susan G. Komen Race for the Cure and the Susan G. Komen 3-Day for the Cure, and generous contributions from our partners, sponsors and fellow supporters, we have become the largest source of nonprofit funds dedicated to the fight against breast cancer in the world. | is parent organization of: Susan G. Komen Tissue Bank | Wikidata: Q246898, grid.428834.1, nlx_82488, Crossref funder ID: 100000869, ISNI: 0000 0001 0241 5320 | https://ror.org/02nadbe75 | SCR_004842 | Susan G. Komen | 2026-09-12 12:56:17 | 24 |
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