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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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SlideShare Resource Report Resource Website 1+ mentions |
SlideShare (RRID:SCR_013818) | software resource | A collaboration tool which allows users to upload and share presentations, infographics, documents, videos, PDFs, and webinars. Individual slideshows are available for download and are easily uploaded to other websites and blogs. | collaboration tool, slideshow, share, presentation, infographic, document, video, PDF, webinar |
is listed by: Connected Researchers is related to: Connected Researchers |
Free, Public | SCR_013818 | 2025-04-19 06:47:05 | 9 | ||||||||||
Flash Gviewer Resource Report Resource Website 1+ mentions |
Flash Gviewer (RRID:SCR_012870) | Flash GViewer | software resource | Flash GViewer is a customizable Flash movie that can be easily inserted into a web page to display each chromosome in a genome along with the locations of individual features on the chromosomes. It is intended to provide an overview of the genomic locations of a specific set of features - eg. genes and QTLs associated with a specific phenotype, etc. rather than as a way to view all features on the genome. The features can hyperlink out to a detail page to enable to GViewer to be used as a navigation tool. In addition the bands on the chromosomes can link to defineable URL and new region selection sliders can be used to select a specific chromosome region and then link out to a genome browser for higher resolution information. Genome maps for Rat, Mouse, Human and C. elegans are provided but other genome maps can be easily created. Annotation data can be provided as static text files or produced as XML via server scripts. This tool is not GO-specific, but was built for the purpose of viewing GO annotation data. Platform: Online tool | visualization, chromosome, video, gene, qtl, genome, navitgation, phenotype, ontology or annotation visualization |
is listed by: Gene Ontology Tools is related to: Gene Ontology has parent organization: Medical College of Wisconsin; Wisconsin; USA |
Free for academic use | nlx_149333 | http://gmod.org/flashgviewer | SCR_012870 | 2025-04-19 06:46:22 | 2 | |||||||
Adobe Flash Resource Report Resource Website |
Adobe Flash (RRID:SCR_017258) | software resource | Software platform used for production of animations, rich Internet applications, desktop applications, mobile applications, mobile games and embedded web browser video players. Adobe will stop updating and distributing Flash Player in 2020. For existing Flash content, eventual, final version of Flash plug-in will still work after 2020, and Adobe will work with browser makers to ensure security vulnerabilities are patched. | Adobe, animation, illustration, mobile, application, game, video, player | Restricted | https://www.adobe.com/products/flashplayer.html | SCR_017258 | Adobe Flash Player, Flash Player, Flash | 2025-04-19 06:48:31 | 0 | |||||||||
University of Pittsburgh, Health Sciences Library System Resource Report Resource Website 1+ mentions |
University of Pittsburgh, Health Sciences Library System (RRID:SCR_011975) | HSLS | data or information resource, database | Database access to information services, educational opportunities, and resources in print and electronic format to faculty, students, and researchers in the schools of the health sciences. | journal, book, video |
is listed by: OMICtools has parent organization: University of Pittsburgh; Pennsylvania; USA |
PMID:17108360 | SCR_011975 | Pitt Health Sciences Library System, Pitt HSLS, Health Sciences Library System | 2025-05-06 11:08:28 | 7 | ||||||||
NIMH Multimedia Resource Report Resource Website |
NIMH Multimedia (RRID:SCR_005467) | podcast, data or information resource, narrative resource, video resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented August 22, 2016. Audio and video available from the National Institute of Mental Health (NIMH). | human, mental health, audio, video, multimedia, podcast | has parent organization: National Institute of Mental Health | National Institute of Mental Health | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_146219 | SCR_005467 | National Institute of Mental Health Multimedia | 2025-05-08 10:57:25 | 0 | |||||||
Databrary Resource Report Resource Website 1+ mentions |
Databrary (RRID:SCR_010471) | Databrary | data repository, software resource, portal, storage service resource, software repository, data or information resource, project portal, service resource, database | Project aims to promote data sharing, archiving, and reuse among researchers who study human development. Focuses on creating tools for scientists to store, manage, preserve, analyze and share video and related data. | behavior, development, data, sharing, audio track, video |
is listed by: re3data.org is related to: Datavyu is related to: Datavyu has parent organization: New York University; New York; USA has parent organization: Pennsylvania State University |
NSF BCS-1238599; NICHD U01 HD076595 |
Restricted | nlx_157733 | https://github.com/databrary | SCR_010471 | 2025-05-12 11:12:29 | 8 | ||||||
BioViz3D Resource Report Resource Website 1+ mentions |
BioViz3D (RRID:SCR_017162) | data processing software, image analysis software, software application, software resource, image reconstruction software | Software for 3D reconstruction from serial slices. Used to create 3D model to analyse organs, tissues and cells, create photos and videos to help scientists in life science, biology and medicine, visualize, analyze and exploit information from serial slices and get accurate quantitative information from reconstructed 3D models. | 3D, reconstruction, serial, slice, create, model, analyze, organ, tissue, cell, photo, video, quantitative | Available for purchase | http://www.biovis3d.com/new_version_3.1.html | SCR_017162 | BioVis3D New Version 3.1 | 2025-05-12 11:18:35 | 2 | |||||||||
SAP Visual Enterprise Author Resource Report Resource Website 1+ mentions |
SAP Visual Enterprise Author (RRID:SCR_014293) | software resource, software application, authoring tool | A desktop application used to create and manage 2D and 3D animation and video and audio assets. SAP Visual Enterprise Author can be used to render visual content into common desktop documents, file formats, and business applications for secure downstream use. A variety of tools allows users to view, transform, optimize, animate, and publish in different formats. | authoring tool, image, animation, 2d, 3d, audio, video | Pay for product | SCR_014293 | SAP 3D Visual Enterprise Author | 2025-05-12 11:15:28 | 2 | ||||||||||
Olympus cellSens Software Resource Report Resource Website 1000+ mentions Rating or validation data |
Olympus cellSens Software (RRID:SCR_014551) | data processing software, data acquisition software, image analysis software, software application, software resource, software toolkit, image acquisition software | Software suite for image acquisition and analysis. The software can be paired with high-quality cameras to maximize output quality and export it for sharing and research applications. | image, analysis, record, video, research, optimize, processing, acquisition, camera, Olympus | Restricted | SCR_016238, SCR_018869 | SCR_014551 | Olympus CellSens Imaging software, Olympus cellSens Dimension | 2025-05-12 11:15:41 | 2898 | |||||||||
WU Knight ADRC Multimedia Presentations Resource Report Resource Website 1+ mentions |
WU Knight ADRC Multimedia Presentations (RRID:SCR_005147) | video resource, data or information resource, narrative resource | Videos of Knight ADRC related events for educational and informational purposes. A link to additional Center produced media is provided to access the Knight ADRC YouTube Channel. Videos are in HTML5 mp4 format and are available in 1080p or 4K resolution. | alzheimer's disease, video, podcast, nonprofit, educational |
has parent organization: Washington University School of Medicine in St. Louis; Missouri; USA has parent organization: Washington University Knight Alzheimer's Disease Research Center |
Public, For nonprofit educational use only | nlx_144155 | SCR_005147 | Washington University Knight Alzheimer's Disease Research Center Multimedia Presentations, Knight ADRC Multimedia Presentations | 2025-05-12 11:07:02 | 2 | ||||||||
eDoctoring Resource Report Resource Website 1+ mentions |
eDoctoring (RRID:SCR_003336) | eDoctoring | training material, training resource, data or information resource, narrative resource, training service resource, service resource, continuing medical education | Online educational tool that brings challenging clinical practice to your computer, providing medical education that is engaging, challenging and interactive. While there is no substitute for real-life direct contact with patients or colleagues, research has shown that interactive online education can be a highly effective and enjoyable method of learning many components of clinical medicine, including ethics, clinical management, epidemiology and communication skills. eDoctoring offers 25 simulated clinical cases, 15 interactive tutorials and a virtual library containing numerous articles, fast facts and video clips. Their learning material is arranged in the following content areas: * Ethical, Legal and Social Implications of Genetic Testing * Palliative and End-of-Life Care * Prostate Cancer Screening and Shared Decision-Making | clinical, medical education, medical, clinical medicine, ethics, clinical management, epidemiology, communication, legal, social, implication, genetic testing, palliative care, end-of-life care, prostate cancer screening, decision-making, prostate cancer, medicine, tutorial, article, video, fact, training material |
has parent organization: Newcastle University; Newcastle upon Tyne; United Kingdom has parent organization: University of California; California; USA |
NCI ; NIH ; CDC ; NHGRI ; Health Resources and Services Administration ; Paul G. Allen Family Foundation ; Robert Wood Johnson Foundation |
nif-0000-31964 | http://edoctoring.ncl.ac.uk/System_Check/psa_detect_html;clickonRouletteWheels | SCR_003336 | 2025-05-12 11:05:21 | 1 | |||||||
Invertebrate Brain Platform Resource Report Resource Website |
Invertebrate Brain Platform (RRID:SCR_006764) | IVB-PF, IVBPF | software resource, training material, data or information resource, narrative resource, image collection, database | Database of information on nervous systems and behavior of various species of invertebrates and a large body of ancillary material to promote the use of invertebrate systems in research and education and facilitate information transfer to engineers that are looking for mechanisms that may be useful to solve a wide range of technological problems. The database is linked to explanations of the contents to allow users to familiarize themselves with the data and the context in which they were obtained. The platform has four entrance points tailored to different target user groups. The first entrance point is designed for users that are interested in using invertebrates for research purposes, in particular in the field of neuroscience, to assist them in initiating research projects. This includes databases of sensory systems, brains, and behavior of invertebrates, especially insects. The databases contain sensory organ structure and function, photographs and movies documenting insect behavior, data acquisition equipment and other instrumentation, software, material for eduction, and bibliography. A second entrance point is available for those that are concerned with implementations of design principles of invertebrate nervous systems and behavior in industrial applications. The third portal is destined for providing quick access for instructors that intend to use invertebrates for educational purposes and the remaining entrance point facilitates obtaining general comparative information on sensory and central nervous systems and behavior of invertebrates. | brain, invertebrate, nervous system, neuron, sensory system, brain, behavior, comparative physiology, elementary, junior high, high school, insect, neurorehabilitation, k-12, video | has parent organization: INCF Japan Node | OED | nif-0000-10269 | SCR_006764 | IVB PF, Invertebrate Brain Platform (IVB-PF) | 2025-05-12 11:08:41 | 0 | |||||||
Salk Institute for Biological Studies: Jude Mitchells Neuron Exchange and Matlab Analysis Resource Report Resource Website |
Salk Institute for Biological Studies: Jude Mitchells Neuron Exchange and Matlab Analysis (RRID:SCR_008055) | data processing software, data visualization software, software resource, software application, rendering software, data or information resource, database | This resource contains to MATLAB code to make and show videos that can be acquired for free. Data for the movies came from a Macaque attention task. Data on this page came from the multiple-object tracking attention task in a Macaque: The monkeys fixated the white dot at the center of the computer monitor, and four striped stimuli appeared. Their eye position was monitored using an IR camera. The red cross shows where the eyes were pointing throughout each trial. The circle shows the location of the receptive field of the neuron under study during the recording. At the beginning of each trial, either one or two of the stimuli were highlighted, indicating to the monkey that they were the targets of attention. The stimuli then moved to new locations and paused, with one stimulus in the receptive field. After a brief pause, they moved to new locations and the fixation point disappeared. The monkey was rewarded with juice if it then looked at the cued targets. Attention Dask Demo (Avi File) contains Matlab code to make and show movies. Publication from this Dataset: * Differential attention-dependent response modulation across cell classes in macaque visual area V4. JF Mitchell, KA Sundberg, JH Reynolds. Neuron, 2007, 55. 131-141. * Supplemental Material, Neuron, 2007, 55. 131-141. :A Subset of data can be downloaded with analysis routines (easiest to download whole set with full subdirectory structure). Additionally, neuron data files can also be downloaded. :* Routines for Fano Factor, Autocorrelation, and Power Spectra (poster above): :o Plots Spike Waveform and Tests if Significant Visual Response: basic_info.m :o Firing Rate and Fano Factor Analysis (Mitchell et. al, 2007): rate_fano_psth.m :* Routines for Spike-LFP Coherence: :o Spike-LFP Coherence with Rate Normalization (attempting Womelsdorf & Fries, Cosyne, 2008): rate_normalized_coherence.m Sponsors: This work was supported by a grant from the National Eye Institute (EY016161, J.F.M. and J.H.R.), a National Institutes of Health Training Fellowship (J.F.M.), and a National Science Foundation Graduate Research Fellowship (K.A.S.). | code, matlab, movies, video, eye tracking device | nif-0000-10412 | SCR_008055 | Salk Insitute (J. Mitchel) | 2025-05-12 11:09:48 | 0 | ||||||||||
Virtual Genetics Education Centre Resource Report Resource Website |
Virtual Genetics Education Centre (RRID:SCR_001958) | VGEC | narrative resource, data or information resource, training material | Hub of evaluated genetics-related teaching resources for teachers and learners in schools and higher education, health professionals and the general public. Suggest or submit a learning resource to the VGEC. Resources include: * simple experiments suitable for all ages * tutorial material * videos on useful techniques * current and relevant links to other evaluated resources The Virtual Genetics Education Centre (VGEC) * Provides information and genetics education resources for higher education, colleges, schools, health professionals and the general public. * Encourages collaboration in the development, evaluation and sharing of genetics education resources * provides links to, and evaluates, sources of information and educational material about genetics. * Explores innovative approaches to teaching and learning in genetics, such as the SWIFT project for example where Second Life is being used to teach some aspects of genetics in a virtual laboratory. | education, genetics, development, teaching, dna, experiment, college student, child, adult, health professional, adolescent, k-12, gene, chromosome, video, evaluation, sharing, learning | has parent organization: University of Leicester; Leicester; United Kingdom | Creative Commons License, The community can contribute to this resource | nif-0000-10529 | SCR_001958 | Virtual Genetics Education Center, GENIE VGEC | 2025-05-12 11:03:54 | 0 | |||||||
www.brainmapping.org Resource Report Resource Website 1+ mentions |
www.brainmapping.org (RRID:SCR_001987) | people resource, community building portal, software resource, portal, training resource, data or information resource, knowledge environment | This is a topical portal dedicated to the communication of news, science, and information of interest to the brain mapping community, and to sharing and promoting the science of brain mapping. The purpose and goal of brain mapping is to advance the understanding of the relationship between structure and function in the human brain. Scientists in this field seek to gain knowledge of the physical processes that underly human sensation, attention, awareness and cognition. These results are immediately applicable to surgical intervention, to the design of medical interventions and to the treatment of psychological and psychiatric disorders. | function, attention, awareness, brain, brain mapping, cognition, cognitive neuroscience, human, journals, manufacturers, mri, mri safety, scientific societies, sensation, structure, subjects, neuroimaging, video | has parent organization: University of California at Los Angeles; California; USA | nif-0000-10669 | SCR_001987 | brainmapping.org | 2025-05-12 11:03:56 | 1 | |||||||||
CMEList.com Resource Report Resource Website |
CMEList.com (RRID:SCR_002288) | CMEList.com | portal, data or information resource, continuing medical education, training resource | Links to, and descriptions of, every web site that offers AMA-approved Continuing Medical Education (CME) online. At this time, there are over 325 sites listed. These sites offer over 16,000 separate activities and over 26,000 hours of credit. Using this list, you can find online CME web sites arranged by their: # dominant medical specialty or medical topic; or # alphabetically by the first letter of the site name; or # you can scroll this list until you find a course or site of interest. Find sites by medical specialty or topic: Allergy, Anesthesia, Bioterrorism, Cardiology, Critical Care, Dermatology, Diabetes/Endocrinology, Ear, Nose and Throat, Emergency Medicine, Family Practice, Gastroenterology, Genetics, Geriatrics, Hematology / Oncology, HIV / Infectious Disease, Imaging / Radiology, Internal Medicine, Neurology, Neurosurgery, Obstetrics / Gynecology, Oncology/Hematology, Ophthalmology, Orthopedic Surgery, Pain Management, Pathology / Lab Medicine, Pediatrics, Psychiatry, Pulmonary, Quality/Management, Radiology / Imaging, Rheumatology, Surgery, Urology, Wellness / Prevention. | education, article, audio, cme, course, credit, definitions, medical, podcast, scientific literature databases and services, continuing medical education, journal, slide, video | is parent organization of: Canadian Online CME Sites | nif-0000-21030 | SCR_002288 | Annotated List of Online Continuing Medical Education (CME), Online Continuing Medical Education (CME) | 2025-05-12 11:04:16 | 0 | ||||||||
Online Neuroscience Lectures - Maintained by the Kilgard Lab Resource Report Resource Website |
Online Neuroscience Lectures - Maintained by the Kilgard Lab (RRID:SCR_001397) | video resource, topical portal, portal, slide, data or information resource | List of lectures, slides and videos concerning neuroscience and neurophysiology. | neuroscience, neurophysiology, lecture, slide, video | Available to the public | nif-0000-08126 | SCR_001397 | Online Neuroscience Lectures | 2025-05-12 11:03:26 | 0 | |||||||||
INCF Dataspace Resource Report Resource Website 1+ mentions |
INCF Dataspace (RRID:SCR_000158) | DataSpace | storage service resource, data repository, service resource |
THIS RESOURCE IS NO LONGER IN SERVICE. Documented August 21, 2017. Repository for sharing of neuroscience data, text, images, sounds, movies, models and simulations. |
neuroscience, text, image, sound, video, model, simulation, data sharing, preservation | has parent organization: International Neuroinformatics Coordinating Facility | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_157665 | SCR_000158 | 2025-05-12 11:02:24 | 2 | ||||||||
Canadian Online CME Sites Resource Report Resource Website |
Canadian Online CME Sites (RRID:SCR_000683) | Canadian Online CME | portal, data or information resource, continuing medical education, training resource | Annotated list of online CME (continuing medical education) with links to, and descriptions of, Web Sites offering courses and CME credit specifically aimed at Canadian physicians. All Canadian Online CME offering MainPro-M1 credit includes an online group discussion format. You must participate in these discussions as well as go though the didactic material to earn credit. | education, audio, canada, course, credit, mainpro-m1, medical, podcast, slide, video | has parent organization: CMEList.com | nif-0000-23612 | SCR_000683 | 2025-05-12 11:02:43 | 0 | |||||||||
Computer Vision System Toolbox Resource Report Resource Website 1+ mentions |
Computer Vision System Toolbox (RRID:SCR_017581) | image processing software, data processing software, software resource, software toolkit, software application | Software tool to provide algorithms, functions, and apps for designing and testing computer vision, 3D vision, and video processing systems for MATLAB. You can perform object detection and tracking, as well as feature detection, extraction, and matching. For 3D vision, toolbox supports single, stereo, and fisheye camera calibration; stereo vision; 3D reconstruction; and lidar and 3D point cloud processing. Computer vision apps automate ground truth labeling and camera calibration workflows. | The MathWorks, Inc. designing, testing, computer, vision, 3D, video, processing, system, MATLAB, object, detection, tracking | is related to: MATLAB | Restricted | SCR_017581 | Computer Vision Toolbox, MATLAB Computer Vision System Toolbox | 2025-05-12 11:19:00 | 2 |
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