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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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National Institutes of Health Resource Report Resource Website 1000+ mentions |
National Institutes of Health (RRID:SCR_011417) | NIH | institution | NIH is the nations medical research agency - making important medical discoveries that improve health and save lives. The National Institutes of Health (NIH), a part of the U.S. Department of Health and Human Services, is the primary Federal agency for conducting and supporting medical research. Helping to lead the way toward important medical discoveries that improve peoples health and save lives, NIH scientists investigate ways to prevent disease as well as the causes, treatments, and even cures for common and rare diseases. NIH research impacts: * child and teen health, * men's health, * minority health, * seniors' health, * women's health, and * wellness and lifestyle issues. Composed of 27 Institutes and Centers, the NIH provides leadership and financial support to researchers in every state and throughout the world. | granting agency, US Department of Health, medical research |
uses: ReadCube uses: Scizzle is related to: All About Grants Podcast is related to: Ranking Tables of NIH Funding to US Medical Schools in 2010 is related to: DMPTool has parent organization: United States Department of Health and Human Services granting agency is parent organization of: Human Genome Project Information is parent organization of: Cross Collaboration Initiatives at the NIH is parent organization of: GEOquery is parent organization of: Trans-Institute Angiogenesis Research Program is parent organization of: Collecting Duct Database is parent organization of: NIH Office of Research Services is parent organization of: ECRbase is parent organization of: NIH Worker Training Program is parent organization of: ACME is parent organization of: NIH Division of Nutrition Research Coordination is parent organization of: Research Services Branch National Institutes of Mental Health is parent organization of: NIH VideoCasting is parent organization of: Biositemaps is parent organization of: Neurofed is parent organization of: NeuronJ: An ImageJ Plugin for Neurite Tracing and Quantification is parent organization of: General Clinical Research Centers Program is parent organization of: Office of Intramural Training and Education is parent organization of: Mutant Mouse Resource and Research Center is parent organization of: NIH Image is parent organization of: Biomedical Information Science and Technology Initiative is parent organization of: NIH NeuroBioBank is parent organization of: NIH Human Pluripotent Stem Cell Registry is parent organization of: NIH MRI Study of Normal Brain Development is parent organization of: OppNet - Basic Behavioral and Social Science Opportunity Network is parent organization of: NIH Blueprint for Neuroscience Research is parent organization of: Kidney Health Initiative is parent organization of: Office of Rare Diseases Research is parent organization of: Center for Cancer Research is parent organization of: NIH Biospecimens Interest Group is parent organization of: NIH Neuroscience Microarray Consortium is parent organization of: Genomic Datasharing is parent organization of: Knockout Mouse Project is parent organization of: NIH Office of Science Education is parent organization of: BARD is parent organization of: StemCellDB is parent organization of: Jobs(at)NIH is parent organization of: Office of Extramural Research NIH is parent organization of: Office of Behavioral and Social Sciences Research is parent organization of: Prize4Life is parent organization of: NIH Pain Consortium is parent organization of: BRAIN Initiative is parent organization of: BTRIS: NIH Biomedical Translational Research Information System is parent organization of: NIH Human Connectome Project is parent organization of: Biowulf at the NIH is parent organization of: National Institutes of Neurological Disorders and Stroke Research Programs is parent organization of: REGARDS - REasons for Geographic and Racial Differences in Stroke is parent organization of: Model Organisms for Biomedical Research is parent organization of: Deltagen and Lexicon Knockout Mice and Phenotypic Data Resource is parent organization of: Brain Computer Interface 2000 Software Package is parent organization of: Cognitive and Emotional Health Project: The Healthy Brain is parent organization of: Cancer Chromosomes is parent organization of: X-linked SCID mutation database is parent organization of: Health Research Funding is parent organization of: Know Stroke Campaign is parent organization of: Comparative Vertebrate Sequencing is parent organization of: Phylogenetic Clusters of Orthologous Groups Ranking is parent organization of: PubMatrix is parent organization of: National Institutes of Health Stem Cell Tables is parent organization of: Allergen Database for Food Safety is parent organization of: Molecular Brain: Transcription Profiles of Mouse and Human Brains is parent organization of: Genetic and Rare Diseases Information Center is parent organization of: Molecular Libraries Program is parent organization of: BMAP - Brain Molecular Anatomy Project is parent organization of: CARDS Database is parent organization of: Office of logistics and acquisition operations is parent organization of: National Centers for Biomedical Computing is parent organization of: Center for Information Technology is parent organization of: Fogarty International Center is parent organization of: Genome association studies is parent organization of: National Cancer Institute is parent organization of: National Center for Complementary and Alternative Medicine is parent organization of: National Center for Research Resources is parent organization of: National Eye Institute (NEI) Commons is parent organization of: National Heart Lung and Blood Institute is parent organization of: National Human Genome Research Institute is parent organization of: National Institute of Biomedical Imaging and Bioengineering is parent organization of: National Institute of Child Health and Human Development is parent organization of: National Institute of Environmental Health Sciences is parent organization of: National Institute of Mental Health is parent organization of: National Institute of Nursing Research is parent organization of: National Institute on Aging is parent organization of: National Institute on Alcohol Abuse and Alcoholism is parent organization of: National Institute on Drug Abuse is parent organization of: National Institute on Minority Health and Health Disparities is parent organization of: National Library of Medicine is parent organization of: NIH Clinical Center is parent organization of: NIH Roadmap is parent organization of: Superfund basic research program is parent organization of: National Institute of Arthritis and Musculoskeletal and Skin Diseases is parent organization of: National Institute of Allergy and Infectious Diseases is parent organization of: NIH Office of the Director is parent organization of: NIH Common Fund is parent organization of: National Center for Advancing Translational Sciences is parent organization of: National Institute on Deafness and Other Communication Disorders is parent organization of: Office of research facilities development and operations is parent organization of: National Institute of General Medical Sciences is parent organization of: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is parent organization of: AIDSinfo Drug Database is parent organization of: Human Microbiome Project is parent organization of: National Institute of Neurological Disorders and Stroke is parent organization of: NIH electronic Research Materials catalogue is parent organization of: Center for Scientific Review is parent organization of: Ontology-based Knowledgebase for Human Cell Adhesion Molecules is parent organization of: Chronic Fatigue Syndrome is parent organization of: National Institute of Health Data Book is parent organization of: NIH-CIDI Lung Segmentation Tool is parent organization of: NIH Pediatric MRI Data Repository is parent organization of: DICOMConvert is parent organization of: Accelerating Medicines Partnership is parent organization of: Biospecimen Research Database |
Available to the research community | nlx_inv_1005116, ISNI: 0000 0001 2297 5165, grid.94365.3d, Wikidata: Q390551, Crossref funder ID: 100000002 | https://ror.org/01cwqze88 | SCR_011417 | National Institutes of Health | 2025-04-19 06:45:39 | 3768 | ||||||
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GWAS: Catalog of Published Genome-Wide Association Studies Resource Report Resource Website 500+ mentions |
GWAS: Catalog of Published Genome-Wide Association Studies (RRID:SCR_012745) | GWASC | data or information resource, catalog, database | Catalog of published genome-wide association studies. Genome-wide set of genetic variants in different individuals to see if any variant is associated with trait and disease. Database of genome-wide association study (GWAS) publications including only those attempting to assay single nucleotide polymorphisms (SNPs). Publications are organized from most to least recent date of publication. Studies are identified through weekly PubMed literature searches, daily NIH-distributed compilations of news and media reports, and occasional comparisons with an existing database of GWAS literature (HuGE Navigator). Works with HANCESTRO ancestry representation. | gene-wide association study, adult, genome, genome-wide association study, single nucleotide polymorphism, publication, literature, phenotype, trait, disease, loci, genetic variant, disorder, snp trait association |
is used by: NIF Data Federation is used by: Schizo-Pi is related to: PheWAS Catalog is related to: Psychiatric Genomics Consortium is related to: KOBAS has parent organization: National Human Genome Research Institute |
NHGRI U41 HG007823; BBSRC ; NHGRI U24 HG012542 |
PMID:19474294 | Free, Freely available | nif-0000-06666 | http://www.genome.gov/gwastudies | SCR_012745 | A Catalog of Published Genome-Wide Association Studies, Catalog of Published GWAS, Catalog of published GWAS studies, NHGRI GWAS Catalog, Catalog of Published Genome-Wide Association Studies, GWAS and PGS Catalogs | 2025-05-06 11:08:50 | 833 | ||||
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Talking Glossary of Genetic Terms Resource Report Resource Website |
Talking Glossary of Genetic Terms (RRID:SCR_003215) | Talking Glossary | narrative resource, data or information resource, database, training material | Glossary of Genetic Terms to help everyone understand the terms and concepts used in genetic research. In addition to definitions, specialists in the field of genetics share their descriptions of terms, and many terms include images, animation and links to related terms. | glossary, image, genetic, gene, education |
is listed by: OMICtools has parent organization: National Human Genome Research Institute |
NHGRI | The community can contribute to this resource | nlx_156942, OMICS_01555 | SCR_003215 | NHGRI Talking Glossary, NHGRI Talking Glossary of Genetic Terms | 2025-05-06 11:01:21 | 0 | ||||||
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Clinical Genomic Database Resource Report Resource Website 1+ mentions |
Clinical Genomic Database (RRID:SCR_006427) | CGD | data or information resource, database | Manually curated database of all conditions with known genetic causes, focusing on medically significant genetic data with available interventions. Includes gene symbol, conditions, allelic conditions, inheritance, age in which interventions are indicated, clinical categorization, and general description of interventions/rationale. Contents are intended to describe types of interventions that might be considered. Includes only single gene alterations and does not include genetic associations or susceptibility factors related to more complex diseases. | genomic sequencing, genome, clinical, pediatric, adult human, young human, genomic medicine, whole-genome sequencing, gene, organ system, intervention, gene symbol, condition, allelic condition, clinical categorization, manifestation, inheritance, age group, genetic variant, pathogenic mutation |
is used by: NIF Data Federation has parent organization: National Human Genome Research Institute |
NHGRI | PMID:23696674 | Free, Freely available | nlx_152872 | SCR_006427 | Clinical Genomics Database | 2025-05-06 11:04:18 | 9 | |||||
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Histone Database Resource Report Resource Website 1+ mentions |
Histone Database (RRID:SCR_007711) | data or information resource, database | Histone Database is a database of histones and their corresponding sequences. Sequence- and text-based searches were performed on NCBI's redundant and non-redundant (nr) peptide sequence databases. These databases are derived from GenBank, EMBL, and DDBJ translated DNA coding regions, plus protein sequences from the PDB (Protein Data Bank), SWISS-PROT, the PIR (Protein Information Resource), and the PRF (Protein Research Foundation). :Users can search by keyword, sequence fragment, category, organism, and redundancy of the set. | histone | has parent organization: National Human Genome Research Institute | nif-0000-02961 | SCR_007711 | Histone Database | 2025-05-06 11:05:18 | 5 | |||||||||
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Shimmer Resource Report Resource Website |
Shimmer (RRID:SCR_001164) | software resource | Software package that detects somatic single-nucleotide variants using statistical hypothesis testing with multiple testing correction. It uses Fisher's exact test along with multiple testing correction (Benjamini-Hochberg) to find significant differences between allele composition with a specified false discovery rate. | standalone software, bam |
is listed by: OMICtools has parent organization: National Human Genome Research Institute |
PMID:23620360 | Free, Public, Acknowledgement requested | OMICS_03612 | SCR_001164 | 2025-04-19 06:40:22 | 0 | ||||||||
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Undiagnosed Diseases Network Resource Report Resource Website 1+ mentions |
Undiagnosed Diseases Network (RRID:SCR_014415) | training resource | A network of clinical sites and core laboratories to accelerate discovery and innovate the way medical professionals diagnose and treat patients with previously undiagnosed diseases. It will serve to test whether this type of cross-disciplinary approach to disease diagnosis is feasible to implement in academic medical centers. It also provides clinical training of contemporary genomic approaches in diagnosing disease. | network, clinical, undiagnosed disease, rare disease | has parent organization: National Human Genome Research Institute | Available to the research community | SCR_014415 | NIH Undiagnosed Diseases Network | 2025-04-19 06:47:13 | 1 | |||||||||
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Generic Model Organism Database Project Resource Report Resource Website 1+ mentions |
Generic Model Organism Database Project (RRID:SCR_001731) | GMOD | portal, software resource, data or information resource, database, topical portal | A collection of open source software tools for creating and managing genome-scale biological databases. GMOD is made up databases, applications, and adaptor software that connects these components together. You can use it to create a small laboratory database of genome annotations, or a large web-accessible community database. At first GMOD just featured model organisms but now any organism with any kind of sequence associated with it is a good candidate as a subject for a GMOD database. There are GMOD databases with just protein sequence in them, with EST sequence only, those that are concerned primarily with gene expression, and even those dedicated to collections of RNA sequence. They have also heard of GMOD databases for oligonucleotides and plasmids. | genome, biological database, model organism, software, annotation, gene, sequence, expressed sequence tag, gene expression, rna sequence, oligonucleotide, plasmid |
is related to: Generic GO Term Mapper is related to: Generic GO Term Finder has parent organization: USDA Agricultural Research Service has parent organization: National Human Genome Research Institute has parent organization: National Institute of General Medical Sciences is parent organization of: SynView is parent organization of: Apollo is parent organization of: GBrowse is parent organization of: CMAP is parent organization of: GBrowse syn |
Open unspecified license | nif-0000-10234 | SCR_001731 | Generic Model Organism Database | 2025-05-06 11:00:03 | 7 | |||||||
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dbSNP Resource Report Resource Website 5000+ mentions |
dbSNP (RRID:SCR_002338) | dbSNP | data or information resource, service resource, database, data repository, storage service resource | Database as central repository for both single base nucleotide substitutions and short deletion and insertion polymorphisms. Distinguishes report of how to assay SNP from use of that SNP with individuals and populations. This separation simplifies some issues of data representation. However, these initial reports describing how to assay SNP will often be accompanied by SNP experiments measuring allele occurrence in individuals and populations. Community can contribute to this resource. | insertion, polymorphism, short, deletion, single, nucleotide, genetic, variation, genomics, genotype, disease, allele, microsatellite, marker, multinucleotide, heterozygous, sequence, gold standard, bio.tools |
is used by: ExAc is used by: GEMINI is recommended by: National Library of Medicine is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: OMICtools is listed by: re3data.org is listed by: bio.tools is listed by: Debian is related to: Ensembl Variation is related to: GWAS Central is related to: TopoSNP is related to: GWAS Central has parent organization: NCBI has parent organization: National Human Genome Research Institute works with: Open Regulatory Annotation Database |
NLM | PMID:21154707 | Free, Freely available | nif-0000-02734, biotools:dbsnp, OMICS_00264 | http://www.ncbi.nlm.nih.gov/projects/SNP/ https://bio.tools/dbsnp |
SCR_002338 | dbSNP: Database for Short Genetic Variations, Entrez SNP - Single Nucleotide Polymorphism, SNV Database, NCBI SNV Database, NCBI Short Genetic Variations Database, NCBI Short Genetic Variations, NCBI Single Nucleotide Polymorphism, Entrez SNP, dbSNP, NCBI Short Genetic Variations (SNV) database | 2025-05-06 11:00:45 | 8217 | ||||
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1000 Genomes: A Deep Catalog of Human Genetic Variation Resource Report Resource Website 5000+ mentions |
1000 Genomes: A Deep Catalog of Human Genetic Variation (RRID:SCR_006828) | 1000 Genomes | portal, consortium, data set, data or information resource, database, organization portal | International collaboration producing an extensive public catalog of human genetic variation, including SNPs and structural variants, and their haplotype contexts, in an effort to provide a foundation for investigating the relationship between genotype and phenotype. The genomes of about 2500 unidentified people from about 25 populations around the world were sequenced using next-generation sequencing technologies. Redundant sequencing on various platforms and by different groups of scientists of the same samples can be compared. The results of the study are freely and publicly accessible to researchers worldwide. The consortium identified the following populations whose DNA will be sequenced: Yoruba in Ibadan, Nigeria; Japanese in Tokyo; Chinese in Beijing; Utah residents with ancestry from northern and western Europe; Luhya in Webuye, Kenya; Maasai in Kinyawa, Kenya; Toscani in Italy; Gujarati Indians in Houston; Chinese in metropolitan Denver; people of Mexican ancestry in Los Angeles; and people of African ancestry in the southwestern United States. The goal Project is to find most genetic variants that have frequencies of at least 1% in the populations studied. Sequencing is still too expensive to deeply sequence the many samples being studied for this project. However, any particular region of the genome generally contains a limited number of haplotypes. Data can be combined across many samples to allow efficient detection of most of the variants in a region. The Project currently plans to sequence each sample to about 4X coverage; at this depth sequencing cannot provide the complete genotype of each sample, but should allow the detection of most variants with frequencies as low as 1%. Combining the data from 2500 samples should allow highly accurate estimation (imputation) of the variants and genotypes for each sample that were not seen directly by the light sequencing. All samples from the 1000 genomes are available as lymphoblastoid cell lines (LCLs) and LCL derived DNA from the Coriell Cell Repository as part of the NHGRI Catalog. The sequence and alignment data generated by the 1000genomes project is made available as quickly as possible via their mirrored ftp sites. ftp://ftp.1000genomes.ebi.ac.uk ftp://ftp-trace.ncbi.nlm.nih.gov/1000genomes | genetic variation, gene, next-generation sequencing, sequence, alignment, genome, single-nucleotide polymorphism, structural variant, haplotype, genome-wide association study, pharmacology, genetics, biomarker, consortium, data sharing, genotype, phenotype, FASEB list |
uses: NHGRI Sample Repository for Human Genetic Research is used by: BioSample Database at EBI is listed by: OMICtools is listed by: re3data.org is listed by: Consortia-pedia is related to: MOSAIK is related to: ART is related to: SNAP - SNP Annotation and Proxy Search has parent organization: Wellcome Trust Sanger Institute; Hinxton; United Kingdom has parent organization: Harvard Medical School; Massachusetts; USA has parent organization: Broad Institute has parent organization: NCBI has parent organization: European Bioinformatics Institute has parent organization: National Human Genome Research Institute |
Wellcome Trust Sanger Institute; Hinxton; United Kingdom ; Beijing Genomics Institute; Shenzhen; China ; NHGRI ; 454 Life Sciences Roche ; Life Technologies ; Illumina |
Free, Public, Restrictions apply, Http://www.1000genomes.org/data#DataAccess | nlx_143819, OMICS_00261 | SCR_006828 | International 1000 Genomes Project, 1000 Genomes Project | 2025-05-06 11:04:41 | 5011 | ||||||
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elements of morphology Resource Report Resource Website 1+ mentions |
elements of morphology (RRID:SCR_003707) | narrative resource, international standard specification, data set, data or information resource, standard specification | Data set of standardized terms used to describe human morphology including definitions of terms for the craniofacies in general, the major components of the face, and the hands and feet. This provides a uniform and internationally accepted terms to describe the human phenotype. | dysmorphology, morphology, malformation, face, hand, foot, facial feature, phenotype, nose, philtrum, ear, lip, mouth, oral region, head, face, periorbital, terminology, vocabulary |
is used by: NIF Data Federation has parent organization: National Human Genome Research Institute |
NIH | PMID:19127575 PMID:19125436 PMID:19125433 PMID:19125428 PMID:19152422 PMID:19152421 |
Public domain, Acknowledgement requested | nlx_157874 | SCR_003707 | Human Malformation Terminology, Elements of Morphology: Human Malformation Terminology | 2025-05-06 11:01:52 | 3 | ||||||
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SKIPPY Resource Report Resource Website 1+ mentions |
SKIPPY (RRID:SCR_005430) | SKIPPY | production service resource, service resource, analysis service resource, data analysis service | A Web-based tool that allows users to input a set of exonic variants to score them for a number of features (such as changes in splicing regulatory elements) that have been shown to be predictive of known genome variations that cause exon skipping or activation of ectopic splice sites. In this way, variants can be either prioritized for further splicing-based functional analysis or the results can be used as further genomic evidence in cases in which the causative variant is already known. | exonic variant, splicing, genome variation, coding variant |
is listed by: OMICtools has parent organization: National Human Genome Research Institute |
PMID:20158892 | OMICS_02258 | SCR_005430 | SKIPPY - A Tool for the Detection of Exonic Variants that Modulate Splicing | 2025-05-06 11:03:14 | 2 | |||||||
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Homeodomain Resource Resource Report Resource Website 1+ mentions |
Homeodomain Resource (RRID:SCR_013081) | data or information resource, database | The Homeodomain Resource is a curated collection of sequence, structure, interaction, genomic, and functional information on the homeodomain family. A description of each of the major sections of the database can be found below, and users can navigate through the site using the links found in the menu that appears on the left-hand side of every page within the site. The website provides lists of Homeodomain proteins, solved three-dimensional structures of homeodomain proteins and protein-DNA complexes, lists of protein-protein interactions involving homeodomain proteins, DNA binding sites, and human genetic and genomic disorders linked to homeodomain proteins. Preexisting Description: homeodomain, protein, protein-DNA complex, | has parent organization: National Human Genome Research Institute | nif-0000-02974 | SCR_013081 | Homeodomain Resource | 2025-05-06 11:09:01 | 3 | ||||||||||
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An Open Access On-Line Breast Cancer Mutation Data Base Resource Report Resource Website 100+ mentions |
An Open Access On-Line Breast Cancer Mutation Data Base (RRID:SCR_008432) | data or information resource, database | When the BRCA1 gene was cloned, a Steering Committee was initiated to help coordinate the formation of a Breast Cancer Information Core (BIC) that could act as such a central repository. NHGRI has chosen as the most accessible format for the BIC this World Wide Web site. The recent identification of mutations in breast cancer susceptibility genes has provided the exciting opportunity to help identify women who are at high risk to develop breast cancer. One of the serious impediments to achieving clinical benefits from this information however, is finding and assessing the significance of mutations in these new susceptibility genes. It is imperative that the detection and interpretation of these mutations is coordinated and that this information is made available to as many qualified investigators as possible. There are many sites on the web that contain general as well as scientific information relevant to breast cancer. A partial list of these can be found here. Having participated in the poorly coordinated analysis of other cancer susceptibility genes, we consider it important to create and maintain a central repository for information regarding mutations and polymorphisms. NHGRI also think it critical to make available the reagents necessary to carry out many different techniques for the detection of such mutations. Sponsors: This resource is supported by the National Human Genome Research Institute (NHGRI). Keywords: Breast, Cancer, Mutation, Clincial, Polymorphism, Gene, Scientific, | FASEB list | has parent organization: National Human Genome Research Institute | nif-0000-30219 | SCR_008432 | Breast Cancer Information Core | 2025-05-06 11:06:14 | 141 |
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