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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
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Open Ephys Resource Report Resource Website 1+ mentions |
Open Ephys (RRID:SCR_021624) | nonprofit organization | Organization mission is to advance understanding of brain by promoting community ownership of neuroscience tools.Collaborative effort to develop, document, and distribute open source tools for systems neuroscience.Project aims to distribute reliable open source software as well as tools for extracellular recording and stimulation. | develop open source tools, distribute open source tools, neuroscience tools, OpenBehavior | is listed by: OpenBehavior | DOI:10.1088/1741-2552/aa651f | SCR_021624 | SciCrunch Registry | Open Ephys | 2026-10-31 12:18:14 | 9 | |||||||||
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Histological E data Registration in rodent Brain Spaces Resource Report Resource Website 1+ mentions |
Histological E data Registration in rodent Brain Spaces (RRID:SCR_022776) | HERBS | data processing software, data visualization software, software application, software resource | Open source, extendable, intuitive and interactive software platform for image visualisation and image registration. Python based GUI for histological E-data registration in brain space. | OpenBehavior, image visualisation, image registration, histological E-data registration, brain space | is listed by: OpenBehavior | DOI:10.1101/2021.10.01.462770 | SCR_022781, https://edspace.american.edu/openbehavior/project/herbs/ | SCR_022776 | SciCrunch Registry | 2026-10-31 12:18:42 | 1 | ||||||||
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BrainWAVE Resource Report Resource Website 1+ mentions |
BrainWAVE (RRID:SCR_024396) | instrument resource, software resource, source code | Code to program and run flicker stimulation on BrainWAVE stimulator device. This brain oscillation stimulating software can be adapted across subjects and integrated into variety of experimental designs like electrophysiology, neuroimaging, EEG, MRI. Flexible method for noninvasive stimulation of brain rhythms across species. Used to measure effects of rhythmic brain activity on behavior. | OpenBehavior, Open source, noninvasive sensory flicker, deep brain stimulation, BrainWAVE stimulator device, measure effects of rhythmic brain activity, behavior | is listed by: OpenBehavior | PMID:36754625 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/brainwave/ | SCR_024396 | SciCrunch Registry | , Brain Wide-spectrum Audio/Visual Exposure, BrainWAVE: Noninvasive Rhythm Stimulation | 2026-10-31 12:23:15 | 6 | |||||||
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AutoStereota Resource Report Resource Website 1+ mentions |
AutoStereota (RRID:SCR_022330) | data or information resource, instrument resource, portal, project portal | Automated surgical instrument for brain tissue aspiration.Instrument for microendoscope implantation. Utilizes robotic control of needle connected to vacuum pump to aspirate brain tissue. System consists of robotic surgical instrument built around commercially available stereotaxic instrument and open source MATLAB-based GUI for control. | OpenBehavior, Instrument, brain tissue aspiration, microendoscope implantation | is listed by: OpenBehavior | DOI:10.1016/j.jneumeth.2018.10.013 | Free, Freely available | https://github.com/liang-bo/AutoStereota | SCR_022330 | SciCrunch Registry | 2026-10-31 12:18:45 | 3 | ||||||||
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BehaviorDEPOT Resource Report Resource Website 1+ mentions |
BehaviorDEPOT (RRID:SCR_023602) | software resource, source code | Software tool for automated behavioral detection based on markerless pose tracking. Behavioral analysis tool to first compile and clean point-tracking output from DeepLabCut, and then classify behavioral epochs using custom behavior classifiers. Used to detect frame by frame behavior from video time series and can analyze results of common experimental assays, including fear conditioning, decision-making in T-maze, open field, elevated plus maze, and novel object exploration. Calculates kinematic and postural statistics from keypoint tracking data from pose estimation software outputs. | OpenBehavior, automated behavioral detection, markerless pose tracking, detect frame by frame behavior, video time series, kinematic and postural statistics, |
is listed by: OpenBehavior is related to: SLEAP, LEAP and MotionMapper project works with: DeepLabCut |
Brain and Behavior Research Foundation ; Brain Research Foundation ; NIMH K01MH116264; NIMH K08MH116125; NIMH T32MH073526; NSF ; Simonsen Foundation ; Whitehall Foundation |
PMID:35997072 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/behaviordepot/ | SCR_023602 | SciCrunch Registry | 2026-10-31 12:23:13 | 2 | |||||||
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Attys project Resource Report Resource Website |
Attys project (RRID:SCR_021461) | data or information resource, instrument resource, portal, project portal | Portal related to biomedical signals.Provides wearable data acquisition device with special focus on biomedical signals such as heart activity (ECG), muscle activity (EMG) and brain activity (EEG).Open source high precision bluetooth data acquisition device. | Biomedical signals acquire, heart activity data acquire, muscle activity data acquire, brain activity data acquire, data acquisition device, bluetooth data acquisition device, OpenBehavior, Instrument | is listed by: OpenBehavior | Free, Freely available | SCR_021461 | SciCrunch Registry | Attys | 2026-10-31 12:18:18 | 0 | |||||||||
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TD_Drive Resource Report Resource Website |
TD_Drive (RRID:SCR_025672) | instrument resource, software resource, source code | Parametric, open-source implant for multi-area electrophysiological recordings in behaving and sleeping rats. 3D-printable implant for rats, capable of symmetric, bilateral wire electrode recordings, currently in up to six distributed brain areas simultaneously. | OpenBehavior, 3D-printable implant, implant, device, multi-area electrophysiological recordings, behaving and sleeping rats, | is listed by: OpenBehavior | Dutch Research Council | PMID:38738884 | https://edspace.american.edu/openbehavior/project/tddrive/ | SCR_025672 | SciCrunch Registry | TD Drive, The TD Drive | 2026-10-31 12:23:41 | 0 | |||||||
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PhotometryBox Resource Report Resource Website |
PhotometryBox (RRID:SCR_021571) | data or information resource, instrument resource, portal, project portal | Portal provides open source control system for in vivo fluorescence measurements from deep brain structures developed by University of California, San Francisco scientists. Microcontroller based solution for controlling optical components in intracranial photometry system and processing resulting signal. | Instrument, fluorescence measurements, deep brain structures, optical fibers, intracranial photometry system, OpenBehavior |
is listed by: OpenBehavior has parent organization: University of California at San Francisco; California; USA |
DOI:10.1016/j.jneumeth.2018.10.022 | Free, Freely available | SCR_021571 | SciCrunch Registry | 2026-10-31 12:18:13 | 0 | |||||||||
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E-Scope Resource Report Resource Website 1+ mentions |
E-Scope (RRID:SCR_025396) | instrument resource, software resource, source code | Miniaturized calcium imaging microscope with integrated dense electrode technology for synchronous acquisition of neural activity across distant regions of the brain. Device based off open-sourced UCLA Miniscope to synchronously measure single cell activity at or near spike-time resolution across distant brain regions in freely behaving mice. Used to perform calcium imaging, with dense electrode electrophysiological recording, allowing simultaneous recordings from two remote brain regions in freely behaving mouse. | OpenBehavior, miniatured microscope, calcium imaging microscope, microscope, synchronous acquisition, freely behaving mice, neural activity, brain distant regions, synchronously measure single cell activity, |
is listed by: OpenBehavior is related to: UCLA Miniscope project |
NICHD P50HD103577; NINDS 1R61NS119708; NINDS R01NS090930; NINDS U01NS122124; NSF NeuroNex Award |
PMID:37066345 | Free, Available for download, Freely available | http://miniscope.org/index.php/Main_Page, https://edspace.american.edu/openbehavior/?s=E-Scope | SCR_025396 | SciCrunch Registry | 2026-10-31 12:23:37 | 3 | |||||||
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Customized Guide Cannulas Resource Report Resource Website |
Customized Guide Cannulas (RRID:SCR_023941) | instrument resource | Open source modular apparatus to produce guide cannulas exploiting 3D printing technology. Step by step procedure to realize hippocampal guide cannulas. 3D-printed guide cannula implant, as well as rotary tool based cutting station for fabrication of cannulae. Useful to conduct research in all the fields where access to brain areas is needed. | OpenBehavior, apparatus, 3D-printed guide cannula implant, produce guide cannulas, brain 3D printing, hippocampal guide cannulas, hippocampal guide cannulas procedure, neuroscience, | is listed by: OpenBehavior | PMID:36104275 | Free, Freely available | SCR_023941 | SciCrunch Registry | 2026-10-31 12:18:56 | 0 | |||||||||
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Lickometer Box Resource Report Resource Website |
Lickometer Box (RRID:SCR_025248) | instrument resource, software resource, source code | Lickometer system based on open-source hardware platform with user-friendly interface software, capable of simultaneously receiving data from eight automated cages with two drinking bottles each. Device to acquire high-quality and detailed data. Adaptable to new types of sensors or other neuroscience tools capable of measuring brain activity simultaneously to the behavior. | OpenBehavior, lickometer, simultaneously receiving data, eight automated cages, two drinking bottles, liquid intake, animal behavior, device | is listed by: OpenBehavior | PMID:35851299 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/lickometer-box/ | SCR_025248 | SciCrunch Registry | Licktech | 2026-10-31 12:23:33 | 0 | |||||||
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Brainways Resource Report Resource Website 1+ mentions |
Brainways (RRID:SCR_024402) | data processing software, image analysis software, software application, software resource | Open source software that automatically registers coronal slices and quantifies fluorescent markers. Python based, AI registration algorithm for slice matching to the Waxholm rat atlas. Slice quantification can be trained on any atlas, which allows use for other subjects such as mice, zebrafish, and humans. AI-based software for registration and analysis of fluorescent markers on coronal brain slices. | OpenBehavior, slice quantification, register coronal slices, quantify fluorescent markers, slice matching to atlas, registration and analysis of fluorescent markers, coronal brain slices, | is listed by: OpenBehavior | DOI:10.1101/2023.05.25.542252 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/brainways/ | SCR_024402 | SciCrunch Registry | 2026-10-31 12:18:59 | 1 |
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