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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Specification URL Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
Brain Imaging Data Structure (BIDs)
 
Resource Report
Resource Website
100+ mentions
Brain Imaging Data Structure (BIDs) (RRID:SCR_016124) BIDS data or information resource, narrative resource, portal, standard specification Standard specification for organizing and describing outputs of neuroimaging experiments. Used to organize and describe neuroimaging and behavioral data by neuroscientific community as standard to organize and share data. BIDS prescribes file naming conventions and folder structure to store data in set of already existing file formats. Provides standardized templates to store associated metadata in form of Javascript Object Notation (JSON) and tab-separated value (TSV) files. Facilitates data sharing, metadata querying, and enables automatic data analysis pipelines. System to curate, aggregate, and annotate neuroimaging databases. Intended for magnetic resonance imaging data, magnetoencephalography data, electroencephalography data, and intracranial encephalography data. Data storing structure, neuroimaging, standardized template, data sharing, MRI data, MEG data, EEG data, iEEG data, FASEB list is used by: OpenNeuro
is used by: SPARC Portal
is used by: SPARC Data Standard
is listed by: FAIRsharing
is related to: BIDS-Matlab
is related to: NiPoppy
works with: MNE-BIDS
European Regional Development Fund ;
German federal state of Sachsen-Anhalt ;
International Neuroinformatics Coordinating Facility ;
Laura and John Arnold Foundation ;
Medical Research Council United Kingdom ;
NIAAA U01 AA021697;
NIGMS P20 GM103472;
NIMH Intramural Research Program ;
NSF 1429999;
Wellcome Trust
PMID:27326542
PMID:29917016
PMID:31239435
PMID:31239438
PMID:37744469
Free, Freely available https://bids-specification.readthedocs.io/en/stable/, https://doi.org/10.25504/FAIRsharing.rd1j6t SCR_016124 Brain Imaging Data Structure, BIDS, Brain Imaging Data Structure (BIDS), Brain Imaging Data Structure v1.4.0 2026-08-21 12:40:37 235
SPARC Portal
 
Resource Report
Resource Website
100+ mentions
SPARC Portal (RRID:SCR_017041) SPARC.science data repository, service resource, storage service resource SPARC data repository as of 2023 is an open data repository developed as part of the NIH SPARC initiative and has been used by SPARC funded investigator groups to curate and publish high quality datasets related to the autonomic nervous system. We are thrilled that as of August 2022, SPARC is accepting datasets from investigators that are not funded through the NIH SPARC program. The NIH's Common Fund Stimulating Peripheral Activity to Relieve Conditions (SPARC) program aims to transform our understanding of these nerve-organ interactions and ultimately advance neuromodulation field toward precise treatment of diseases and conditions for which conventional therapies fall short. Nervous system, periphery, organ, human, FASEB list, repository, curated uses: Protocols.io
uses: Brain Imaging Data Structure (BIDs)
uses: Physiome Model Repository
uses: SciGraph
uses: o²S²PARC
uses: SODA
uses: Blackfynn Discover
uses: ApiNATOMY
uses: Biolucida
uses: TissueMaker
uses: ScaffoldMaker
uses: ScaffoldFitter
uses: OpenCOR
uses: Pennsieve Data Management Platform
uses: InterLex
uses: Neurolucida 360
uses: SciCrunch
uses: Tissue Mapper
uses: Vesselucida 360
uses: DataCite
uses: TissueMaker
is used by: NIH Heal Project
is recommended by: NIDDK Information Network (dkNET)
is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases
is recommended by: National Library of Medicine
is related to: SPARC Anatomy Working Group
is related to: HORNET CENTER FOR AUTONOMIC NERVE RECORDING AND STIMULATION SYSTEMS
is related to: NIH PRECISION Human Pain Network
is related to: SCKAN Explorer
is related to: SCKANNER
works with: SPARC Data Standard
has organization facet: o²S²PARC
has organization facet: SODA
has organization facet: SPARC Anatomy Working Group
has organization facet: Blackfynn Discover
has organization facet: ApiNATOMY
has organization facet: Pennsieve Data Management Platform
NIH Office of the Director OD023849;
NIH Office of the Director OD024908;
NIH Office of the Director OD025306;
NIH Office of the Director OD025349;
NIH Office of the Director OD026585;
NIH Office of the Director OD030213;
NIH Office of the Director OD030541;
NIH Office of the Director OD032619
PMID:34248680
DOI:10.1101/2021.02.10.430563
Free, Freely available, DOI:10.26275, r3d100013719 https://commonfund.nih.gov/sparc, https://docs.sparc.science/, https://data.sparc.science/, https://doi.org/10.26275, https://doi.dx/10.26275, https://sparc.science/data?type=dataset, https://doi.org/10.17616/R31NJN2V SCR_017041 , SPARC Project, SPARC Repository, Stimulating Peripheral Activity to Relieve Conditions 2026-08-21 12:41:02 119

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