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Integrated Animals is a virtual database currently indexing available animal strains and mutants from: AGSC (Ambystoma), BCBC (mice), BDSC (flies), European Xenopus Resource Center (frog), The National Xenopus Resource (frog), Xenopus Express (frog), CWRU Cystic Fibrosis Mouse Models (mice), DGGR (flies), FlyBase (flies), IMSR (mice), MGI (mice), MMRRC (mice), NSRRC (pig), RGD (rats), Sperm Stem Cell Libraries for Biological Research (rats), Tetrahymena Stock Center (Tetrahymena), WormBase (worms), XGSC (Xiphophorus), ZFIN (zebrafish), and ZIRC (zebrafish). Note, the IMSR data is linked, but users may need to re-execute the search if the top mouse is not returned properly.
Note: BCBC is no longer in service, so the links may not be functional.
http://www.wormbase.org/db/get?name=WBStrain00052008
Source Database: WormBase (WB)
Affected Genes: WBGene00000446(ceh-23)
Genomic Alteration: WBGene00000446(ceh-23)
Availability: unknown
Source References: PMID:34312566
Synonyms: ujIs113 II; ceh-23(dev193([mNeonGreen::ceh-23]) III.
Notes: Processed manually from the January AFP strain emails that failed parsing|"ujIs113 [pie-1p::mCherry::H2B::pie-1 3'UTR + nhr-2p::mCherry::his-24::let-858 3UTR + unc-119(+)] II. mNeonGreen knockin at N-terminus of ceh-23 locus. Cellular protein expression pattern during embryogenesis (until bean stage) is available at URL: dulab.genetics.ac.cn/TF-atlas. Reference: Ma X, Zhao Z, Xiao L, et al. Nat Methods. 2021;18(8):893-902. doi:10.1038/s41592-021-01216-1."
Proper citation: RRID:WB-STRAIN:WBStrain00052008 Copy
http://www.wormbase.org/db/get?name=WBStrain00052009
Source Database: WormBase (WB)
Affected Genes: WBGene00001210(egl-46)
Genomic Alteration: WBGene00001210(egl-46)
Availability: unknown
Source References: PMID:34312566, PMID:38555276
Synonyms: ujIs113 II; egl-46(dev194([mNeonGreen::egl-46]) V.
Notes: Processed manually from the January AFP strain emails that failed parsing|"ujIs113 [pie-1p::mCherry::H2B::pie-1 3'UTR + nhr-2p::mCherry::his-24::let-858 3UTR + unc-119(+)] II. mNeonGreen knockin at N-terminus of egl-46 locus. Cellular protein expression pattern during embryogenesis (until bean stage) is available at URL: dulab.genetics.ac.cn/TF-atlas. Reference: Ma X, Zhao Z, Xiao L, et al. Nat Methods. 2021;18(8):893-902. doi:10.1038/s41592-021-01216-1."
Proper citation: RRID:WB-STRAIN:WBStrain00052009 Copy
http://www.wormbase.org/db/get?name=WBStrain00052003
Source Database: WormBase (WB)
Affected Genes: WBGene00000476(cfi-1)
Genomic Alteration: WBGene00000476(cfi-1)
Availability: unknown
Source References: PMID:34312566
Synonyms: cfi-1(dev183([mNeonGreen::cfi-1]) I; ujIs113 II.
Notes: Processed manually from the January AFP strain emails that failed parsing|"ujIs113 [pie-1p::mCherry::H2B::pie-1 3'UTR + nhr-2p::mCherry::his-24::let-858 3UTR + unc-119(+)] II. mNeonGreen knockin at N-terminus of cfi-1 locus. Cellular protein expression pattern during embryogenesis (until bean stage) is available at URL: dulab.genetics.ac.cn/TF-atlas. Reference: Ma X, Zhao Z, Xiao L, et al. Nat Methods. 2021;18(8):893-902. doi:10.1038/s41592-021-01216-1."
Proper citation: RRID:WB-STRAIN:WBStrain00052003 Copy
http://www.wormbase.org/db/get?name=WBStrain00051954
Source Database: WormBase (WB)
Affected Genes: WBGene00022608(madf-9)
Genomic Alteration: WBGene00022608(madf-9)
Availability: unknown
Synonyms: madf-9(st12324[madf-9::TY1::EGFP::3xFLAG]) IV.
Notes: CRISPR/Cas9 engineered tagged endogenous locus.|"Made_by: DKV/EF"
Proper citation: RRID:WB-STRAIN:WBStrain00051954 Copy
http://www.wormbase.org/db/get?name=WBStrain00052004
Source Database: WormBase (WB)
Affected Genes: WBGene00001253(elt-6)
Genomic Alteration: WBGene00001253(elt-6)
Availability: unknown
Source References: PMID:34312566, PMID:39405353
Synonyms: ujIs113 II; elt-6(dev188([mNeonGreen::elt-6]) IV.
Notes: Processed manually from the January AFP strain emails that failed parsing|"ujIs113 [pie-1p::mCherry::H2B::pie-1 3'UTR + nhr-2p::mCherry::his-24::let-858 3UTR + unc-119(+)] II. mNeonGreen knockin at N-terminus of elt-6 locus. Cellular protein expression pattern during embryogenesis (until bean stage) is available at URL: dulab.genetics.ac.cn/TF-atlas. Reference: Ma X, Zhao Z, Xiao L, et al. Nat Methods. 2021;18(8):893-902. doi:10.1038/s41592-021-01216-1."
Proper citation: RRID:WB-STRAIN:WBStrain00052004 Copy
http://www.wormbase.org/db/get?name=WBStrain00051953
Source Database: WormBase (WB)
Affected Genes: WBGene00008118(madf-8)
Genomic Alteration: WBGene00008118(madf-8)
Availability: unknown
Synonyms: madf-8(st12322[madf-8::TY1::EGFP::3xFLAG]) III.
Notes: CRISPR/Cas9 engineered tagged endogenous locus.|"Made_by: DKV/EF"
Proper citation: RRID:WB-STRAIN:WBStrain00051953 Copy
http://www.wormbase.org/db/get?name=WBStrain00052005
Source Database: WormBase (WB)
Affected Genes: WBGene00006870(vab-3)
Genomic Alteration: WBGene00006870(vab-3)
Availability: unknown
Source References: PMID:34312566
Synonyms: ujIs113 II; vab-3(dev190([vab-3::mNeonGreen]) X.
Notes: Processed manually from the January AFP strain emails that failed parsing|"ujIs113 [pie-1p::mCherry::H2B::pie-1 3'UTR + nhr-2p::mCherry::his-24::let-858 3UTR + unc-119(+)] II. mNeonGreen knockin at C-terminus of vab-3 locus. Cellular protein expression pattern during embryogenesis (until bean stage) is available at URL: dulab.genetics.ac.cn/TF-atlas. Reference: Ma X, Zhao Z, Xiao L, et al. Nat Methods. 2021;18(8):893-902. doi:10.1038/s41592-021-01216-1."
Proper citation: RRID:WB-STRAIN:WBStrain00052005 Copy
http://www.wormbase.org/db/get?name=WBStrain00051959
Source Database: WormBase (WB)
Availability: unknown
Synonyms: heIs9 IV.
Notes: heIs9 [myo-3p::cyd-1 + myo-3p::cdk-4::Venus + myo-3p::GFP::H2B] IV. Expression of CYD-1, CDK-4::VENUS, and GFP::H2B in body wall muscles (BWM). Over-expression of tagged CYD-1 and tagged CDK-4 from integrated transgene causes incidental extra BWM nuclei. Expression levels are higher that those from heIs12 in SV860. Reference: Korzelius J, et al. PLoS Genet. 2011 Nov;7(11):e1002362. PMID: 22102824
Proper citation: RRID:WB-STRAIN:WBStrain00051959 Copy
http://www.wormbase.org/db/get?name=WBStrain00051957
Source Database: WormBase (WB)
Affected Genes: WBGene00006843(unc-119)
Genomic Alteration: WBGene00006843(unc-119)
Availability: unknown
Synonyms: unc-119(ed3) III; stxEx35.
Notes: stxEx35 [istr-1::TY1::eGFP::3xFLAG + Cbr-unc-119(+)]. Pick non-Unc to maintain. Constitutive expression of GFP. TY1::EGFP::3xFLAG tag inserted in frame at C-terminus of istr-1 coding sequence in fosmid WRM0636D_F01 by recombineering (TransgeneOme bacterial clone 5438954842362824 D10). Reference: Radetskaya O, et al. The PMK-3 (p38) Mitochondrial Retrograde Response Functions in Intestinal Cells to Extend Life via the ESCRT Machinery. bioRxiv 797308; doi: https:
Proper citation: RRID:WB-STRAIN:WBStrain00051957 Copy
http://www.wormbase.org/db/get?name=WBStrain00051940
Source Database: WormBase (WB)
Availability: unknown
Synonyms: F33H1.4(st12303[F33H1.4::TY1::EGFP::3xFLAG]) II.
Notes: eGFP and 3xFLAG tags inserted into endogenous locus by CRISPR/Cas9.|"Made_by: DKV/LS/CK"
Proper citation: RRID:WB-STRAIN:WBStrain00051940 Copy
http://www.wormbase.org/db/get?name=WBStrain00051947
Source Database: WormBase (WB)
Availability: unknown
Synonyms: hmg-1.1(st12311[TY1::EGFP::3xFLAG::hmg-1.1]) II.
Notes: CRISPR/Cas9 engineered tagged endogenous locus.|"Made_by: DKV/LS/CK"
Proper citation: RRID:WB-STRAIN:WBStrain00051947 Copy
http://www.wormbase.org/db/get?name=WBStrain00051946
Source Database: WormBase (WB)
Affected Genes: WBGene00009998(klf-2)
Genomic Alteration: WBGene00009998(klf-2)
Availability: unknown
Synonyms: klf-2(st12310[TY1::EGFP::3xFLAG::klf-2]) II.
Notes: eGFP and 3xFLAG tags inserted into endogenous locus by CRISPR/Cas9.|"Made_by: DKV/LS/CK"
Proper citation: RRID:WB-STRAIN:WBStrain00051946 Copy
http://www.wormbase.org/db/get?name=WBStrain00051945
Source Database: WormBase (WB)
Affected Genes: WBGene00007242(madf-5)
Genomic Alteration: WBGene00007242(madf-5)
Availability: unknown
Synonyms: madf-5(st12308[madf-5::TY1::EGFP::3xFLAG]) II.
Notes: eGFP and 3xFLAG tags inserted into endogenous locus by CRISPR/Cas9.|"Made_by: DKV/LS/CK"
Proper citation: RRID:WB-STRAIN:WBStrain00051945 Copy
http://www.wormbase.org/db/get?name=WBStrain00051949
Source Database: WormBase (WB)
Affected Genes: WBGene00002245(lag-1)
Genomic Alteration: WBGene00002245(lag-1)
Availability: unknown
Synonyms: lag-1(st12314[lag-1::TY1::EGFP::3xFLAG]) IV.
Notes: CRISPR/Cas9 engineered tagged endogenous locus.|"Made_by: DKV/EF"
Proper citation: RRID:WB-STRAIN:WBStrain00051949 Copy
http://www.wormbase.org/db/get?name=WBStrain00036519
Source Database: WormBase (WB)
Affected Genes: WBGene00001072(dpy-10)|WBGene00004174(abu-14)
Genomic Alteration: WBGene00001072(dpy-10), WBGene00004174(abu-14)
Availability: available
Synonyms: abu-14(ok1789)/mIn1 [mIs14 dpy-10(e128)] II.
Alternate IDs: WB-STRAIN:VC1330, CGC_VC1330
Notes: This strain was provided by the C. elegans Reverse Genetics Core Facility at the University of British Columbia, which is part of the international C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use.|"ZK1067.7. Homozygous lethal deletion chromosome balanced by GFP- and dpy-10-marked inversion. Heterozygotes are WT with relatively dim pharyngeal GFP signal, and segregate WT dim GFP, Dpy bright GFP (mIn1 homozygotes), and non-GFP ok1789 homozygotes (variable arrest, larval through sterile adult). Pick WT dim GFP and check for correct segregation of progeny to maintain. External left primer: CGAAAACAGAAGTTGTCGCA. External right primer: GTCAACAAACCAAATGCGTG. Internal left primer: AGAATTCAGGGAAGGGGATG. Internal right primer: CTCCGGTTTCCGAGTATGAA. Internal WT amplicon: 2113 bp. Deletion size: 292 bp. Deletion left flank: AAAAGTAGTATTTAAAAAAGAAATTTACCT. Deletion right flank: GCGTTCGAAACAACTCCTTGAATCGGAGGA."
Proper citation: RRID:WB-STRAIN:WBStrain00036519 Copy
http://www.wormbase.org/db/get?name=WBStrain00036595
Source Database: WormBase (WB)
Affected Genes: WBGene00003056(lon-2)|WBGene00015391(sdha-1)
Genomic Alteration: WBGene00003056(lon-2), WBGene00015391(sdha-1)
Availability: available
Synonyms: +/szT1 [lon-2(e678)] I; sdha-1(ok1908)/szT1 X.
Alternate IDs: WB-STRAIN:VC1434, CGC_VC1434
Notes: C03G5.1. Apparent homozygous lethal deletion chromosome balanced by lon-2-marked translocation. Heterozygotes are WT, and segregate WT, Lon-2 males, arrested szT1 aneuploids, and ok1908 homozygotes (arrest stage/phenotype undetermined). Pick WT and check for correct segregation of progeny to maintain. External left primer: AACGAAGGCAAACTGGTGAC. External right primer: CTACGAGCGGTTCATTTGGT. Internal left primer: AATAGGAGCGGACCTTTGGT. Internal right primer: GCAATTCCGCACGTTTATCT. Internal WT amplicon: 2954 bp. Deletion size: 1211 bp. Deletion left flank: GACGAAGCTCGGCAGTTGAGATGTCTCCCT. Deletion right flank: GCATTACAATTAAAATATTCTGATTAAGTT.|"This strain was provided by the C. elegans Reverse Genetics Core Facility at the University of British Columbia, which is part of the international C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use."
Proper citation: RRID:WB-STRAIN:WBStrain00036595 Copy
http://www.wormbase.org/db/get?name=WBStrain00036598
Source Database: WormBase (WB)
Affected Genes: WBGene00000254(bli-4)|WBGene00004808(skr-2)
Genomic Alteration: WBGene00000254(bli-4), WBGene00004808(skr-2)
Availability: available
Synonyms: skr-2(ok1938) I/hT2 [bli-4(e937) let-?(q782) qIs48] (I;III).
Alternate IDs: WB-STRAIN:VC1439, CGC_VC1439
Notes: F46A9.4. Homozygous sterile deletion chromosome balanced by bli-4- and GFP-marked translocation. Heterozygotes are WT with pharyngeal GFP signal, and segregate WT GFP, arrested hT2 aneuploids, and non-GFP ok1938 homozygotes (sterile, lays eggs that don't hatch). Homozygous hT2[bli-4 let-? qIs48] inviable. Pick WT GFP and check for correct segregation of progeny to maintain. External left primer: GCAAGCCAAATTGAATGGTT. External right primer: TTCCTTCTTCGTCGTCGAGT. Internal left primer: CGCGACATAAAAATGCACAC. Internal right primer: CACACAAAGGAAGAGACGCA. Internal WT amplicon: 2146 bp. Deletion size: 1107 bp. Deletion left flank: GGTGCACCAAACACCAGTCCGACCCAATTC. Deletion right flank: GTTCTATAACGATCGATAACTCTGCGTCTC.|"This strain was provided by the C. elegans Reverse Genetics Core Facility at the University of British Columbia, which is part of the international C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use."
Proper citation: RRID:WB-STRAIN:WBStrain00036598 Copy
http://www.wormbase.org/db/get?name=WBStrain00036599
Source Database: WormBase (WB)
Affected Genes: WBGene00000254(bli-4)|WBGene00004303(ran-2)
Genomic Alteration: WBGene00000254(bli-4), WBGene00004303(ran-2)
Availability: available
Synonyms: ran-2(ok1939) III/hT2 [bli-4(e937) let-?(q782) qIs48] (I;III).
Alternate IDs: WB-STRAIN:VC1440, CGC_VC1440
Notes: C29E4.3. Homozygous lethal deletion chromosome balanced by bli-4- and GFP-marked translocation. Heterozygotes are WT with pharyngeal GFP signal, and segregate WT GFP, arrested hT2 aneuploids, and non-GFP ok1939 homozygotes (early larval arrest). Homozygous hT2[bli-4 let-? qIs48] inviable. Pick WT GFP and check for correct segregation of progeny to maintain. External left primer: TCGCAGAATCACTGAAAACG. External right primer: CCCAATCAGTTTCAGCCTGT. Internal left primer: GCTCTTGGAGAGGCATTGAC. Internal right primer: CGGCGGACGATATTTTCTTA. Internal WT amplicon: 2901 bp. Deletion size: 2075 bp. Deletion left flank: GACAAAATAAATCGAGATTGTCTGAAGAAA. Deletion right flank: ACGTGTTATTCTTCAACTTTCAGCACCTCT.|"This strain was provided by the C. elegans Reverse Genetics Core Facility at the University of British Columbia, which is part of the international C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use."
Proper citation: RRID:WB-STRAIN:WBStrain00036599 Copy
http://www.wormbase.org/db/get?name=WBStrain00036513
Source Database: WormBase (WB)
Affected Genes: WBGene00003615(nhr-16)
Genomic Alteration: WBGene00003615(nhr-16)
Availability: available
Synonyms: nhr-16(gk588) II.
Alternate IDs: WB-STRAIN:VC1321, CGC_VC1321
Notes: Made_by: Vancouver KO Group|"T12C9.6. External left primer: TTCCTGCCAGGGAAATAATG. External right primer: AAAGTCGTGGATCCGAGTTG. Internal left primer: CTTACCTACCGCCTGCTTTG. Internal right primer: GACGAGTATCCTAGCGGCTG. Internal WT amplicon: 2095 bp. Deletion size: 963 bp. Deletion left flank: TTTTATCTATTTAATATTCACAAGGGTGTA. Deletion right flank: ATAATATGTAGAAGCTTTTGTAAGGTGTGA."|"This strain was provided by the C. elegans Reverse Genetics Core Facility at the University of British Columbia, which is part of the international C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use."
Proper citation: RRID:WB-STRAIN:WBStrain00036513 Copy
http://www.wormbase.org/db/get?name=WBStrain00036526
Source Database: WormBase (WB)
Affected Genes: WBGene00016870(ets-10)
Genomic Alteration: WBGene00016870(ets-10)
Availability: available
Synonyms: C52B9.11(gk596) X.
Alternate IDs: WB-STRAIN:VC1340, CGC_VC1340
Notes: C52B9.11. Superficially wild type. External left primer: CCAAACGCACAGCAATTAAA. External right primer: ATTGTGCACTGCTGGTGAAG. Internal left primer: TCGTAAACTATGCAGCGCAC. Internal right primer: CCGCATTTAAACATGGAAGG. Internal WT amplicon: 2173 bp. Deletion size: 1435 bp. Deletion left flank: ATGCAAACACAAACTTTTTGTTTAGCATAT. Deletion right flank: TCGCTACTTTTTTGCTGTCTGTTCAACATT.|"Made_by: Vancouver KO Group"|"Mutagen:UV/TMP"|"This strain was provided by the C. elegans Reverse Genetics Core Facility at the University of British Columbia, which is part of the international C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use."
Proper citation: RRID:WB-STRAIN:WBStrain00036526 Copy
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