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Integrated Animals is a virtual database currently indexing available animal strains and mutants from: AGSC (Ambystoma), BCBC (mice), BDSC (flies), European Xenopus Resource Center (frog), The National Xenopus Resource (frog), Xenopus Express (frog), CWRU Cystic Fibrosis Mouse Models (mice), DGGR (flies), FlyBase (flies), IMSR (mice), MGI (mice), MMRRC (mice), NSRRC (pig), RGD (rats), Sperm Stem Cell Libraries for Biological Research (rats), Tetrahymena Stock Center (Tetrahymena), WormBase (worms), XGSC (Xiphophorus), ZFIN (zebrafish), and ZIRC (zebrafish). Note, the IMSR data is linked, but users may need to re-execute the search if the top mouse is not returned properly.
Note: BCBC is no longer in service, so the links may not be functional.
| Organism Name | Proper Citation | Species | Synonyms |
Notes |
Phenotype | Affected Gene | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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lin-35(kea7[lin-35p::degron::GFP::lin-35]) I. Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00050618 | Caenorhabditis elegans | lin-35(kea7[lin-35p::degron::GFP::lin-35]) I. | Made_by: Winnie Zhao|"N-terminal degron::GFP tag was inserted into the endogenous lin-35 locus. Generated in N2 background. Reference: Willis AR, et al. Sci Adv. 2021 May 5;7(19):eabf3114. PMID: 33952520 [NOTE: lin-35(kea7) is an N-terminal tag; the methods section of the paper incorrectly describes the tag as a C-terminal insertion.]" | WBGene00003020(lin-35) | WBGene00003020(lin-35) | WB-STRAIN:WBStrain00050618 | WormBase (WB) | WB | unknown | WormBase | 2026-10-10 11:02:17 | 0 | ||||
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gwSi17 set-4(n4600) II; met-2(n4256) set-25(n5021) III; gwIs4 X. Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00050682 | Caenorhabditis elegans | gwSi17 set-4(n4600) II; met-2(n4256) set-25(n5021) III; gwIs4 X. | gwSi17 [cec4p::cec4::WmCherry::cec4 3'UTR] II. gwIs4 [baf-1p::GFP-lacI::let-858 3UTR + myo-3p::RFP] X. Worms are slow growing with reduced brood size and become sterile at elevated temperatures. Expresses GFP-LacI throughout development from early embryogenesis, forming a large spot at the lacO array. Worms have red muscle (from L1 stage). CEC-4::WmCherry is visible at the nuclear periphery in embryos and L1 stage animals. Reference: Cabianca DS, et al. Nature 2019 May;569(7758):734-739. PMID: 31118512 | WBGene00012802(set-25)|WBGene00016313(set-4)|WBGene00019883(met-2) | WBGene00012802(set-25), WBGene00016313(set-4), WBGene00019883(met-2) | WB-STRAIN:WBStrain00050682 | WormBase (WB) | WB | unknown | WormBase | 2026-10-10 11:02:18 | 0 | ||||
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met-2(n4256) set-25(n5021) III. Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00050680 | Caenorhabditis elegans | met-2(n4256) set-25(n5021) III. | Made_by: BenjaminD. Towbin|"Worms are slow growing with reduced brood size and become sterile at elevated temperatures. Mutants co-segregate with ~ 20cM distance. Reference: Towbin BD, et al. Cell. 2012 Aug 31;150(5):934-47. PMID: 22939621" | WBGene00012802(set-25)|WBGene00019883(met-2) | WBGene00012802(set-25), WBGene00019883(met-2) | WB-STRAIN:WBStrain00050680 | WormBase (WB) | WB | unknown | WormBase | 2026-10-10 11:02:18 | 0 | ||||
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bqSi447 II; bqSi495 IV; ygIs1. Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00050686 | Caenorhabditis elegans | bqSi447 II; bqSi495 IV; ygIs1. | bqSi447 [hsp16.41p::FRT::mCherry::his-58::FRT::GFP::dam + unc-119(+)] II. bqSi495 [myo-3p::FLP::D5 + unc-119(+)] IV. ygIs1 [baf-1p::GFP::lamin(wt) + unc-119(+)]. Strain expressing muscle specific DAM::GFP, used as a control for muscle specific EMR-DamID. Strain also has low level over-expression of GFP::LMN-1. Might still carry unc-119(ed3) or (ed9) in background. Reference: Harr JC, et al. Genes Dev. 2020 Apr 1;34(7-8):560-579. PMID: 32139421|"Made_by: Jennifer Harr" | WB-STRAIN:WBStrain00050686 | WormBase (WB) | WB | unknown | WormBase | 2026-10-10 11:02:18 | 0 | ||||||
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bqsi433 II; bqSi495 IV; ygIs1. Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00050685 | Caenorhabditis elegans | bqsi433 II; bqSi495 IV; ygIs1. | bqsi433 [hsp16.41p::FRT::mCherry::his-58::FRT::dam::emr-1 + unc-119(+)] II. bqSi495 [myo-3p::FLP::D5 + unc-119(+)] IV. ygIs1 [baf-1p::GFP::lamin(wt) + unc-119(+)]. Strain used to perform muscle specific EMR-DamID, to map lamina-associated domains (LADs). Strain also has low level over-expression of GFP::LMN-1. Might still carry unc-119(ed3) or (ed9) in background. Reference: Harr JC, et al. Genes Dev. 2020 Apr 1;34(7-8):560-579. PMID: 32139421|"Made_by: Jennifer Harr" | WB-STRAIN:WBStrain00050685 | WormBase (WB) | WB | unknown | WormBase | 2026-10-10 11:02:18 | 0 | ||||||
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met-2(gw1419[met-2::FLAG::TEV::mCherry]) III. Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00050684 | Caenorhabditis elegans | met-2(gw1419[met-2::FLAG::TEV::mCherry]) III. | Made_by: Micol Guidi|"Superficially wild-type. Endogenously tagged met-2 locus, with MET-2::mCherry signal detectable in all germline and somatic tissues. Reference: Delaney CE, et al. J Cell Biol. 2019 Mar 4;218(3):820-838. PMID: 30737265" | WBGene00019883(met-2) | WBGene00019883(met-2) | WB-STRAIN:WBStrain00050684 | WormBase (WB) | WB | unknown | WormBase | 2026-10-10 11:02:18 | 0 | ||||
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lsm-8 (xe17[myo-2p::mCherry::unc-54 3'UTR]) IV/nT1 [qIs51] (IV;V); pkIs1582 V/nT1 [qIs51] (IV;V). Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00050683 | Caenorhabditis elegans | lsm-8 (xe17[myo-2p::mCherry::unc-54 3'UTR]) IV/nT1 [qIs51] (IV;V); pkIs1582 V/nT1 [qIs51] (IV;V). | Made_by: Florian Aeschlimann|"pkIs1582 [let-858::GFP + rol-6(su1006)] V. Homozygous lethal lsm-8 deletion balanced by GFP-marked nT1 translocation. xe17 generated by CRISPR/Cas9-engineered replacement of the gene with a red pharyngeal marker. lsm-8 heterozygotes are wild-type (will roll in this case because of pkIs1582) green & red pharynx, and will segregate rolling heterozygotes (green & red pharynx), arrested nT1[qIs51] aneuploids (only green pharynx), and lsm-8 homozygotes (only red pharynx). Homozygous nT1[qIs51] inviable. Pick rollers with green & red pharynx and check for correct segregation of progeny to maintain. Reference: Mattout A, et al. Nat Cell Biol. 2020 May;22(5):579-590. PMID: 32251399" | WBGene00003082(lsm-8)|WBGene00003514(myo-2)|WBGene00006789(unc-54) | WBGene00003082(lsm-8), WBGene00003514(myo-2), WBGene00006789(unc-54) | WB-STRAIN:WBStrain00050683 | WormBase (WB) | WB | unknown | WormBase | 2026-10-10 11:02:18 | 0 | ||||
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meg-3(ax3051[meg-3::OLLAS]) meg-4(ax3052) X. Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00050721 | Caenorhabditis elegans | meg-3(ax3051[meg-3::OLLAS]) meg-4(ax3052) X. | P granule size reduced, detection of MEG-3 by anti-OLLAS antibody. References: Smith, J. et al. Elife. 2016 Dec 3;5:e21337. doi: 10.7554/eLife.21337. PMID: 27914198 Schmidt H, bioRxiv 2020.10.15.340570 (2020) doi:10.1101/2020.10.15.340570. | WBGene00001569(meg-3)|WBGene00016485(meg-4) | WBGene00001569(meg-3), WBGene00016485(meg-4) | WB-STRAIN:WBStrain00050721 | WormBase (WB) | WB | unknown | WormBase | 2026-10-10 11:02:19 | 0 | ||||
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puf-11(q1128[3xV5::puf-11]) IV. Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00050727 | Caenorhabditis elegans | puf-11(q1128[3xV5::puf-11]) IV. | 3x V5 epitope tags inserted into endogenous puf-11 locus. Expresses functional 3x V5-tagged PUF-11. Reference: Haupt KA, Genetics. 2020 Jan;214(1):147-161. PMID: 31740451 | WBGene00022257(puf-11) | WBGene00022257(puf-11) | WB-STRAIN:WBStrain00050727 | WormBase (WB) | WB | unknown | WormBase | 2026-10-10 11:02:19 | 0 | ||||
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klp-15(ok1958) klp-16(or1952)/tmC18[dpy-5(tmIs1236)] I; ltIs37 IV; ruIs57. Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00050671 | Caenorhabditis elegans | klp-15(ok1958) klp-16(or1952)/tmC18[dpy-5(tmIs1236)] I; ltIs37 IV; ruIs57. | itIs37 [pie-1p::mCherry::H2B::pie-1 3'UTR + unc-119(+)] IV. ruIs57 [pie-1p::GFP::tubulin + unc-119(+)]. tmC18 balancer marked with myo-2p::mCherry and Dpy. Heterozygotes are wild-type with pharyngeal mCherry, and segregate mCherry+ heterozygotes, tmC18 homozygotes (mCherry+ Dpy) and non-mCherry klp-15/16 homozygotes. Homozygous double deletion mutants are fertile but produced reduced brood sizes with highly penetrant embryonic lethality; will also segregate some males. Reference: Chuang CH, et al., Biology Open 2020 9: bio052308 doi: 10.1242/bio.052308 Published 25 June 2020|"ltIs37 [pie-1p::mCherry::his-58 + unc-119(+)] IV. ruIs57 [pie-1p::GFP::tubulin + unc-119(+)]. tmC18 balancer marked with myo-2p::mCherry and Dpy. Heterozygotes are wild-type with pharyngeal mCherry, and segregate mCherry+ heterozygotes, tmC18 homozygotes (mCherry+ Dpy) and non-mCherry klp-15/16 homozygotes. Homozygous double deletion mutants are fertile but produced reduced brood sizes with highly penetrant embryonic lethality; will also segregate some males. [NOTE: the ltIs37 [pie-1p::mCherry::his-58 + unc-119(+)] IV transgene was previously annotated as itIs37 in this strain. The correct name of the transgene is ltIs37 and not itIs37.] Reference: Chuang CH, et al., Biology Open 2020 9: bio052308 doi: 10.1242/bio.052308 Published 25 June 2020" | WBGene00001067(dpy-5)|WBGene00002225(klp-15)|WBGene00002226(klp-16) | WBGene00001067(dpy-5), WBGene00002225(klp-15), WBGene00002226(klp-16) | WB-STRAIN:WBStrain00050671 | WormBase (WB) | WB | unknown | WormBase | 2026-10-10 11:02:18 | 0 | ||||
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klp-15(ok1958) aspm-1(syb1260[gfp::aspm-1]) klp-16(or1952) /tmC18[dpy-5(tmIs1236)] I; ltIs37[pie-1p::mCherry::H2B::pie-1 3'UTR + unc-119(+)] IV Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00050674 | Caenorhabditis elegans | klp-15(ok1958) aspm-1(syb1260[gfp::aspm-1]) klp-16(or1952) /tmC18[dpy-5(tmIs1236)] I; ltIs37[pie-1p::mCherry::H2B::pie-1 3'UTR + unc-119(+)] IV | itIs37 [pie-1p::mCherry::H2B::pie-1 3'UTR + unc-119(+)] IV. ruIs57 [pie-1p::GFP::tubulin + unc-119(+)]. GFP tag inserted into endogenous aspm-1 locus. tmC18 balancer marked with myo-2p::mCherry and Dpy. Heterozygotes are wild-type with pharyngeal mCherry, and segregate mCherry+ heterozygotes, tmC18 homozygotes (mCherry+ Dpy) and non-mCherry triple mutant homozygotes. Homozygous triple mutants are fertile but produced reduced brood sizes with highly penetrant embryonic lethality; will also segregate some males. Reference: Chuang CH, et al., Biology Open 2020 9: bio052308 doi: 10.1242/bio.052308 Published 25 June 2020|"ltIs37 [pie-1p::mCherry::his-58 + unc-119(+)] IV. ruIs57 [pie-1p::GFP::tubulin + unc-119(+)]. GFP tag inserted into endogenous aspm-1 locus. tmC18 balancer marked with myo-2p::mCherry and Dpy. Heterozygotes are wild-type with pharyngeal mCherry, and segregate mCherry+ heterozygotes, tmC18 homozygotes (mCherry+ Dpy) and non-mCherry triple mutant homozygotes. Homozygous triple mutants are fertile but produced reduced brood sizes with highly penetrant embryonic lethality; will also segregate some males. [NOTE: the ltIs37 [pie-1p::mCherry::his-58 + unc-119(+)] IV transgene was previously annotated as itIs37 in this strain. The correct name of the transgene is ltIs37 and not itIs37.] Reference: Chuang CH, et al., Biology Open 2020 9: bio052308 doi: 10.1242/bio.052308 Published 25 June 2020" | WBGene00001067(dpy-5)|WBGene00002225(klp-15)|WBGene00002226(klp-16)|WBGene00004027(pie-1)|WBGene00006843(unc-119)|WBGene00008107(aspm-1) | WBGene00001067(dpy-5), WBGene00002225(klp-15), WBGene00002226(klp-16), WBGene00004027(pie-1), WBGene00006843(unc-119), WBGene00008107(aspm-1) | WB-STRAIN:WBStrain00050674 | WormBase (WB) | WB | unknown | WormBase | 2026-10-10 11:02:18 | 0 | ||||
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zyg-9(or1956[gfp::zyg-9]) II; ltIs37 IV. Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00050673 | Caenorhabditis elegans | zyg-9(or1956[gfp::zyg-9]) II; ltIs37 IV. | itIs37 [pie-1p::mCherry::H2B::pie-1 3'UTR + unc-119(+)] IV. GFP tag inserted into endogenous zyg-9 locus. Might still contain unc-119(ed3) in the background. Reference: Chuang CH, et al., Biology Open 2020 9: bio052308 doi: 10.1242/bio.052308 Published 25 June 2020|"ltIs37 [pie-1p::mCherry::his-58 + unc-119(+)] IV. GFP tag inserted into endogenous zyg-9 locus. Might still contain unc-119(ed3) in the background. [NOTE: the ltIs37 [pie-1p::mCherry::his-58 + unc-119(+)] IV transgene was previously annotated as itIs37 in this strain. The correct name of the transgene is ltIs37 and not itIs37.] Reference: Chuang CH, et al., Biology Open 2020 9: bio052308 doi: 10.1242/bio.052308 Published 25 June 2020" | WBGene00006994(zyg-9) | WBGene00006994(zyg-9) | WB-STRAIN:WBStrain00050673 | WormBase (WB) | WB | unknown | WormBase | 2026-10-10 11:02:18 | 0 | ||||
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gwIs39 gwIs34 unc-119(ed3) III. Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00050678 | Caenorhabditis elegans | gwIs39 gwIs34 unc-119(ed3) III. | gwIs39 [baf-1::gfp-lacI::let-858 3'UTR + vit-5::GFP] III. gwIs34 [myo-3::mCherry + 256xlacO + unc-119(+)] III. Superficially wild-type. Expresses GFP-LacI throughout development from early embryogenesis, forming a small spot at the lacO array. Worms have red muscle (from L1 stage) and green intestine (from late L4 stage). Reference: Meister P, et al. Genes Dev. 2010 Apr 15;24(8):766-82. PMID: 20395364 | WBGene00006843(unc-119) | WBGene00006843(unc-119) | WB-STRAIN:WBStrain00050678 | WormBase (WB) | WB | unknown | WormBase | 2026-10-10 11:02:18 | 0 | ||||
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nlp-8(syb762) IV. Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00050711 | Caenorhabditis elegans | nlp-8(syb762) IV. | Made_by: Marina Sinner /SunyBiotech|"syb762 is a 1076 bp deletion in nlp-8. Flanking sequences: taaaacccggaacc - acttcttgaacaactg Forward primer: TAAAAGCGGAGTAGCGTCCA Reverse primer: CAGATGGTCGGGTGATTTGA syb762 was generated in a mutant background and out-crossed to N2 to remove those background mutations. Reference: Sinner MP, et al. Curr Biol. 2021 Feb 8;31(3):564-577.e12. PMID: 33259791" | WBGene00003746(nlp-8) | WBGene00003746(nlp-8) | WB-STRAIN:WBStrain00050711 | WormBase (WB) | WB | unknown | WormBase | 2026-10-10 11:02:18 | 0 | ||||
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frSi21 II; frIs7 IV; rde-1(ne300) V. Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00050716 | Caenorhabditis elegans | frSi21 II; frIs7 IV; rde-1(ne300) V. | frSi21 [col-62p::rde-1 3'UTR] II. frIs7 [nlp-29p::GFP + col-12p::DsRed] IV. frSi21 inserted into ttTi5605 site using CRISPR/Cas9 engineering. RDE-1 activity is rescued in adult epidermal tissues, making animals RNAi-deficient except for hypodermal (skin) tissues from the young adult stage. The frSi21 insertion can be detected using a primer within the col-62 promoter (jep2245: caaaaaggcgggatgagcag) in combination with downstream primer in rde-1 (jep2817 tcatactcgtagtattcccg), producing a 965 bp product if insertion is present. rde-1(ne300) can be genotyped by sequencing the PCR product from jep2299: gaacaacgacaatcgagcacca and jep3108: ATcttgtgaccgaactgtcc (jep3108 is not present in the frSi21 transgene). Reference: Watts JS, et al. G3 (Bethesda) 2020 Nov 5;10(11):4167-4176. PMID: 32943454|"frSi21 [col-62p::rde-1 3'UTR] II. frIs7 [nlp-29p::GFP + col-12p::DsRed] IV. frSi21 inserted into ttTi5605 site using CRISPR/Cas9 engineering. RDE-1 activity is rescued in adult epidermal tissues, making animals RNAi-deficient except for hypodermal (skin) tissues from the young adult stage. The frSi21 insertion can be detected using a primer within the inserted vector but outside the genomic rde-1 sequence included in the transgene (jep3108: ATcttgtgaccgaactgtcc) in combination with downstream primer (jep2445: caaaaaggcgggatgagcag), producing a 965 bp product if insertion is present. rde-1(ne300) can be genotyped by sequencing the PCR product from jep2299: gaacaacgacaatcgagcacca and jep3108: ATcttgtgaccgaactgtcc. Reference: https:" | WBGene00004323(rde-1) | WBGene00004323(rde-1) | WB-STRAIN:WBStrain00050716 | WormBase (WB) | WB | unknown | WormBase | 2026-10-10 11:02:19 | 0 | ||||
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osIs158 II; ieSi58 IV. Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00050714 | Caenorhabditis elegans | osIs158 II; ieSi58 IV. | Made_by: Takefumi Negishi|"osIs158 [eft-3p::ccvTIR-1(F79G)::mRuby] single copy inserted into ttTi5605 on LG II. ieSi58 [eft-3p::degron::GFP::unc-54 3'UTR + Cbr-unc-119(+)] IV. This strain expresses the improved version of TIR1 used for improved auxin-inducible degradation (AID2) technology. Reference: Negishi T, et al. Genetics. 2021 Dec 2;iyab218. doi: 10.1093/genetics/iyab218."|"osIs158 [eft-3p::ccvTIR-1(F79G)::mRuby] single copy inserted into ttTi5605 on LG II. ieSi58 [eft-3p::degron::GFP::unc-54 3'UTR + Cbr-unc-119(+)] IV. This strain expresses the improved version of TIR1 used for improved auxin-inducible degradation (AID2) technology. Reference: Yesbolatova A, et al. Nat Commun. 2020 Nov 11;11(1):5701." | WB-STRAIN:WBStrain00050714 | WormBase (WB) | WB | unknown | PMID:34865044 | WormBase | 2026-10-10 11:02:18 | 0 | |||||
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cshIs128 II; ieSi58 IV. Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00050713 | Caenorhabditis elegans | cshIs128 II; ieSi58 IV. | cshIs128 [rps-28p::TIR1::T2A::mCherry::his-11 + Cbr-unc-119(+)] II. ieSi58 [eft-3p::degron::GFP::unc-54 3'UTR + Cbr-unc-119(+)] IV. Companion strain to HML1012. Harbors conventional allele of TIR1 and Nuclear localized mCherry co-expression marker.|"Made_by: Nat" | WB-STRAIN:WBStrain00050713 | WormBase (WB) | WB | unknown | WormBase | 2026-10-10 11:02:18 | 0 | ||||||
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wrdSi46 I. Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00050719 | Caenorhabditis elegans | wrdSi46 I. | wrdSi46 [SCMp*::TIR1::F2A::mTagBFP2::AID*::NLS::tbb-2 3'UTR] (I:-5.32). Seam cell-specific expression of TIR1 co-factor for AID, and tissue-specific AID-tagged blue protein in seam cell nuclei. Some expression in hypodermal cells. Reference: Ashley GE, et al. Genetics. 2021 Mar 31;217(3):iyab006. doi: 10.1093/genetics/iyab006. PMID: 33677541|"wrdSi46[SCMp*::TIR1::F2A::BFP::AID*::NLS::tbb-2 3'UTR] I:-5.32 Seam cell-specific expression of TIR1 co-factor for AID, and tissue-specific AID-tagged blue protein in seam cell nuclei. Some expression in hypodermal cells. Reference Ashley et al., 2020" | WB-STRAIN:WBStrain00050719 | WormBase (WB) | WB | unknown | PMID:38839826 | WormBase | 2026-10-10 11:02:19 | 0 | |||||
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ncs-2(ju836) Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00050660 | Caenorhabditis elegans | ncs-2(ju836) | Superficially wild-type. Reference: Zhou K, et al. Cell Reports 2017 May 9;19(6):1117-1129. PMID: 28494862 | WBGene00003564(ncs-2) | WBGene00003564(ncs-2) | WB-STRAIN:WBStrain00050660 | WormBase (WB) | WB | unknown | PMID:38530893 | WormBase | 2026-10-10 11:02:18 | 0 | |||
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uqIs5. Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00050662 | Caenorhabditis elegans | uqIs5. | uqIs5 [lbp-2p::lbp-2::TagRFP]. Age-dependent aggregation of LBP-2::TagRFP in the pseudocoelom. Reference: Gallotta I, et al. Nature. 2020 Jul 8. doi: 10.1038/s41586-020-2461-z. | WB-STRAIN:WBStrain00050662 | WormBase (WB) | WB | unknown | WormBase | 2026-10-10 11:02:18 | 0 |
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