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Integrated Animals is a virtual database currently indexing available animal strains and mutants from: AGSC (Ambystoma), BCBC (mice), BDSC (flies), European Xenopus Resource Center (frog), The National Xenopus Resource (frog), Xenopus Express (frog), CWRU Cystic Fibrosis Mouse Models (mice), DGGR (flies), FlyBase (flies), IMSR (mice), MGI (mice), MMRRC (mice), NSRRC (pig), RGD (rats), Sperm Stem Cell Libraries for Biological Research (rats), Tetrahymena Stock Center (Tetrahymena), WormBase (worms), XGSC (Xiphophorus), ZFIN (zebrafish), and ZIRC (zebrafish). Note, the IMSR data is linked, but users may need to re-execute the search if the top mouse is not returned properly.
Note: BCBC is no longer in service, so the links may not be functional.
| Organism Name | Proper Citation | Species | Synonyms |
Notes |
Phenotype | Affected Gene | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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SD-Ccdc39em1Jgn Resource Report Resource Website |
RRID:RGD_150520220 | Rattus norvegicus | The CRISPR/Case9 system was desgined to create the progressive hydrocephalus (prh) mutation in Sprague Dawley rats. The homozygous rat carries chr2:g.120305679A>T change that creates a splice site (Ccdc39c.916+2T ) mutation in the rat Ccdc39 gene. | 150520220 | mutant | Rat Genome Database (RGD) | RGD | Unknown | 150520220 | RGD | 2026-10-17 01:54:06 | 0 | |||||
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SD-Defb23em1Mlit Resource Report Resource Website |
RRID:RGD_38549353 | Rattus norvegicus | CRISPR/Cas9 system was used to generate this mutant; sgRNA targeting exon2 of Defb23 was injected into the cytoplasm of fertilized embryos of Slc:SD. The resulting mutation is a 171-bp deletion in exon2. | 38549353 | mutant | Rat Genome Database (RGD) | RGD | Unknown | 38549353 | RGD | 2026-10-17 01:54:06 | 0 | |||||
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SD-Defb26em1Mlit Resource Report Resource Website |
RRID:RGD_38549354 | Rattus norvegicus | CRISPR/Cas9 system was used to generate this mutant; sgRNA targeting exon2 of Defb26 was injected into the cytoplasm of fertilized embryos of Slc:SD. The resulting mutations is a 246-bp deletion in exon2. | 38549354 | mutant | Rat Genome Database (RGD) | RGD | Unknown | 38549354 | RGD | 2026-10-17 01:54:06 | 0 | |||||
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SD-Ngly1em1Ta-/- Resource Report Resource Website |
RRID:RGD_39457950 | Rattus norvegicus | The homozygous Ngly1 mutant rats are littermates of cross of heterozygotesNgly1 mutant rats . The mutations created by CRISPR/Cas9 contained 2.6 kb deletions in exon 11 and exon 12 and a 3' flanking region of the Ngly1. Two single-guideRNA (sgRNA) sequences targeting sites upstream (5'-sgRNA;5'-cagaggaattgtgatagtacagg-3')anddownstream(3'-sgRNA; 5'-ccagttattcataccatggtaaa-3') of the exon 11, exon 12 and a 3'flanking region of the ratNgly1genome, respectively. By the time of deposition, this strain was crossed twice to Crl:CD (SD). "Homozygous rats are obtained by crossing between heterozygous rats. Maintain the strain by crossing between heterozygous rats or by backcrossing to Crl:CD (SD) rats. Homozygous rats, both females and males, have no record of pregnancy and reproduction. They are more likely to be infertile." National BioResource Project for the Rat in Japan | 39457950 | mutant | Rat Genome Database (RGD) | RGD | Cryopreserved Sperm (as of 2021-07-22) | 39457950 | RGD | 2026-10-17 01:54:06 | 0 | |||||
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SD-Defb42em1Mlit Resource Report Resource Website |
RRID:RGD_38549355 | Rattus norvegicus | CRISPR/Cas9 system was used to generate this mutant; sgRNA targeting exon2 of Defb42 was injected into the cytoplasm of fertilized embryos of Slc:SD. The resulting mutation is a 85 -bp deletion in exon2. | 38549355 | mutant | Rat Genome Database (RGD) | RGD | Unknown | 38549355 | RGD | 2026-10-17 01:54:06 | 0 | |||||
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BN-Lx/CubMcwi Resource Report Resource Website |
RRID:RGD_38676495 | Rattus norvegicus | These are re-derived rats of BN-Lx/Cub now maintained at Medical College of Wisconsin. The parent strain was derived by introgressing mutant Lx gene of the polydactylous (PD/Cub) rat onto the BN background. RGD HRDP, contact Hybrid Rat Diversity Program at [email protected] | 38676495 | mutant | Rat Genome Database (RGD) | RGD | Live Animals; Cryopreserved Embryo (as of 2024-08-06) | 38676495 | RGD | 2026-10-17 01:54:06 | 0 | |||||
|
FHH-Chr 1BN-Add3em2Mcwi /Roman Resource Report Resource Website |
RRID:RGD_150429618 | Rattus norvegicus | ZFN system was used to Knock out the rat Add3 gene of FHH-Chr 1BN/Mcwi rat embryos.The ZFN mRNA was injected into the pronucleus of fertilized FHH-Chr 1BN/Mcwi embryos and transferred to the oviduct of pseudopregnant females. PCR genotyping of tail biopsies confirmed a 68-bp deletion using forward primer 5'-GCCCCCATGAGTCACTACAC-3' and reverse primer 5'-GCTACAGGAAGCATCTCCTGTG-3'. Founders with Add3 deletion were backcrossed to the parental strain to generate heterozygous F1 rats. Heterozygous F1 siblings were then intercrossed to derive a homozygous KO line used | 150429618 | mutant | Rat Genome Database (RGD) | RGD | Unknown | 150429618 | RGD | 2026-10-17 01:54:05 | 0 | |||||
|
WI- Lpar1m1Hubr Resource Report Resource Website |
RRID:RGD_39457945 | Rattus norvegicus | The Lpar1 mutant rat line was generated by target-selected ENU-driven mutagenesis of male MSH6 knockout rats, and high-throughput resequencing of genomic target sequences in progeny from mutagenized rats revealed an ENU-induced missense mutation in Lpar1 that resulted in the change of a methionine into an arginine (p.M318R) in the 8th helix and that was predicted to be deleterious for protein function. The founder animal was mated with wild type Msh6 females. The Msh6 mutated allele was eliminated by systematic selection of F2. | 39457945 | mutant | Rat Genome Database (RGD) | RGD | Unknown | 39457945 | RGD | 2026-10-17 01:54:06 | 0 | |||||
|
SD-Adgrl3em1Huyc Resource Report Resource Website |
RRID:RGD_127285661 | Rattus norvegicus | The CRISPR/Cas9 system was used to to delete exon 3 of the rat Adgrl3 (Lphn3). Two sgRNAs targeting the sequences flanking exon 3 (GTCCCTTGCCAGTACATCTC and CCTAGTGTTGTGTTCTGCTA),Cas9 mRNA with the CRISPR/Cas9 reagents was injected into fertilized eggs. Genotyping of founder rats was confirmed by PCR genotyping using three primers: 1. AAAGGGTCATAGCATCCGGC, 2. CTAACGTGGCTTTTTGTCTTCT, and 3. GCTCGACAGACAGTGTGGAT. The WT band occurs at ~320 bp and KO band at ~452 bp. | 127285661 | mutant | Rat Genome Database (RGD) | RGD | Unknown | 127285661 | RGD | 2026-10-17 01:54:07 | 0 | |||||
|
BN-Aireem1Ang-/- Resource Report Resource Website |
RRID:RGD_38599146 | Rattus norvegicus | The homozygous Aire mutant rats are littermates of cross of heterozygotes Aire mutant rats . The mutations created by ZFN reagents targeting to a DNA sequence 59-TGCCACCCAGACCCCCCACAAAGAGAAGAGCCCTGGAAGAG- 39 in exon 3 of the Aire gene. This mutant carries a 17-bp deletion in the nuclear localization signal sequence, causing a premature stop codon. | 38599146 | mutant | Rat Genome Database (RGD) | RGD | Unknown | 38599146 | RGD | 2026-10-17 01:54:06 | 0 | |||||
|
SS-Xdhem1Mcwi-/- Resource Report Resource Website |
RRID:RGD_14398479 | Rattus norvegicus | CRISPR/Cas9 system was used to introduce a 7-bp deletion in exon 4 of rat Xdh gene in the SS/JrHsdMcwi embryos. There was no Xdh protein detected in the kidney cortex tissue of 6-week old homozygous mutants. Contact MCW rat distribution at [email protected] | 14398479 | mutant | Rat Genome Database (RGD) | RGD | Cryopreserved Sperm (as of 2024-05-29) | 14398479 | RGD | 2026-10-17 01:54:07 | 0 | |||||
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SD-Ephx2em2Mcwi Resource Report Resource Website |
RRID:RGD_25394528 | Rattus norvegicus | CRISPR/Cas9 system was used to introduce a mutation in the Crl:SD rat embryos. The resulting mutation is a a 23-bp deletion in exon 3. Contact MCW rat distribution at [email protected] | 25394528 | mutant | Rat Genome Database (RGD) | RGD | Cryopreserved Sperm (as of 2021-11-03) | 25394528 | RGD | 2026-10-17 01:54:06 | 0 | |||||
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SD-Il2rgem1-/y/Mlit Resource Report Resource Website |
RRID:RGD_38548915 | Rattus norvegicus | The Il2rg knock-out rats were obtained by injecting Il2rg-targeting sgRNA into 1-cell embryos. The resulted mutation is 1-bp insertion (A) at 71169012 position. No protein was detected in the spleen of this Il2rg knock out. | 38548915 | mutant | Rat Genome Database (RGD) | RGD | Unknown | 38548915 | RGD | 2026-10-17 01:54:07 | 0 | |||||
|
SD-Mir146bem1Mcwi Resource Report Resource Website |
RRID:RGD_25330093 | Rattus norvegicus | CRISPR/Cas9 system was used to introduce a mutation in the Crl:SD rat embryos. The resulting mutation is a 7-bp deletion in Mir146b. Contact MCW rat distribution at [email protected] | 25330093 | mutant | Rat Genome Database (RGD) | RGD | Unknown | 25330093 | RGD | 2026-10-17 01:54:06 | 0 | |||||
|
SD-Myh7bem1Blar+/+ Resource Report Resource Website |
RRID:RGD_149735898 | Rattus norvegicus | This is the homozygous wild type littermate from crossing of heterozygous SD-Myh7b mutants. The Myh7b knockout SD rats were generated using the CRISPR/Cas9 system targeting exon 2, resulting 7 bases deletion of exon 2 and generated a new termination codon TGA in exon 3. The heterzygous Myh7b+/- rats were crossed to generate littermate controls. The birth ratio of wild type (WT):Myh7b+/-:Myh7b-/- was approximately 1:2:1, indicating that Myh7b-/- did not cause fetal death. | 149735898 | mutant | Rat Genome Database (RGD) | RGD | Unknown | 149735898 | RGD | 2026-10-17 01:54:06 | 0 | |||||
|
SS-Xdhem2Mcwi Resource Report Resource Website |
RRID:RGD_14398481 | Rattus norvegicus | CRISPR/Cas9 system was used to introduce a 12-bp deletion in exon 4 of rat Xdh gene in the SS/JrHsdMcwi embryos. Contact MCW rat distribution at [email protected] | 14398481 | mutant | Rat Genome Database (RGD) | RGD | Cryopreserved Sperm (as of 2021-11-03) | 14398481 | RGD | 2026-10-17 01:54:07 | 0 | |||||
|
LEW-Glp1rem3Mcwi Resource Report Resource Website |
RRID:RGD_14394491 | Rattus norvegicus | CRISPR/Cas9 system was used to introduce a 4-bp deletion in exon 2 of the Glp1r gene in Lew/NCrl embryos. Contact MCW rat distribution at [email protected] | 14394491 | mutant | Rat Genome Database (RGD) | RGD | Cryopreserved Sperm (as of 2026-02-19) | 14394491 | RGD | 2026-10-17 01:54:06 | 0 | |||||
|
LE-Scn2aem1Mcwi Resource Report Resource Website 1+ mentions |
RRID:RGD_25394530 | Rattus norvegicus | The rat strain was produced by injecting CRISPR/Cas9 targeting rat Scn2a into Crl:LE embryos. The mutant allele was produced by injecting CRISPR/Cas9 targeting rat Scn2a into Crl:LE embryos. The resulting mutation is net 4-bp deletion in exon 5 comprising a 10-bp deletion (shown in lower case: CTACGGGATccctggaattGGTTGGATTTCACAGTCATT ) and a 6-bp insertion (TTCACT). Autism Rat Model Resource. Contact MCW rat distribution at [email protected] | 25394530 | mutant | Rat Genome Database (RGD) | RGD | Live Animals (as of 2025-02-20) | 25394530 | RGD | 2026-10-17 01:54:06 | 2 | |||||
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SD-Cyp3a23/3a1em1Myliu,Cyp3a2em1Myliu Resource Report Resource Website |
RRID:RGD_14696722 | Rattus norvegicus | This rat strain is a double knock out for Cyp3a23/3a1 and Cyp3a2 created by using CRISPR/Cas9 targeting exons of Cyp3a23/3a1 and Cyp3a2. This strain carries a 22-bp deletion of Cyp3a23/3a1 and a 10-bp deletion of Cyp3a2 on Sprague Dawley background. | 14696722 | mutant | Rat Genome Database (RGD) | RGD | Unknown | 14696722 | RGD | 2026-10-17 01:54:06 | 0 | |||||
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W-Trpa1em1Kcrd Resource Report Resource Website |
RRID:RGD_38676448 | Rattus norvegicus | This Trpa1-deleted Wistar (background: Crl:WI) strain was generated by using Zinc Finger Nuclease at Kirin Company, Limited in 2013. Exon 22-24, which form ion channel pore required for the activation in Trpa1 gene, was deleted. National BioResource Project for the Rat in Japan | 38676448 | mutant | Rat Genome Database (RGD) | RGD | Cryopreserved Embryo (as of 2020-09-17) | 38676448 | RGD | 2026-10-17 01:54:06 | 0 |
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