Searching the Resource Information Network

Our searching services are busy right now. Please try again later

  • Register
X
Forgot Password

If you have forgotten your password you can enter your email here and get a temporary password sent to your email.

X

Leaving Community

Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.

No
Yes

 PMID:37776851  

Analysis of proteome-wide degradation dynamics in ALS SOD1 iPSC-derived patient neurons reveals disrupted VCP homeostasis.

Konstantinos Tsioras | Kevin C Smith | Seby L Edassery | Mehraveh Garjani | Yichen Li | Chloe Williams | Elizabeth D McKenna | Wenxuan Guo | Anika P Wilen | Timothy J Hark | Stefan L Marklund | Lyle W Ostrow | Jonathan D Gilthorpe | Justin K Ichida | Robert G Kalb | Jeffrey N Savas | Evangelos Kiskinis
Cell reports | 2023

Mutations in SOD1 cause amyotrophic lateral sclerosis (ALS) through gain-of-function effects, yet the mechanisms by which misfolded mutant SOD1 (mutSOD1) protein impairs human motor neurons (MNs) remain unclear. Here, we use induced-pluripotent-stem-cell-derived MNs coupled to metabolic stable isotope labeling and mass spectrometry to investigate proteome-wide degradation dynamics. We find several proteins, including the ALS-causal valosin-containing protein (VCP), which predominantly acts in proteasome degradation and autophagy, that degrade slower in mutSOD1 relative to isogenic control MNs. The interactome of VCP is altered in mutSOD1 MNs in vitro, while VCP selectively accumulates in the affected motor cortex of ALS-SOD1 patients. Overexpression of VCP rescues mutSOD1 toxicity in MNs in vitro and in a C. elegans model in vivo, in part due to its ability to modulate the degradation of insoluble mutSOD1. Our results demonstrate that VCP contributes to mutSOD1-dependent degeneration, link two distinct ALS-causal genes, and highlight selective protein degradation impairment in ALS pathophysiology.

Pubmed ID: 37776851

Associated grants

  • Agency: NIA NIH HHS, United States
    Id: R01 AG078796
  • Agency: NINDS NIH HHS, United States
    Id: R01 NS134166
  • Agency: NINDS NIH HHS, United States
    Id: R21 NS107761
  • Agency: NINDS NIH HHS, United States
    Id: R01 NS097850
  • Agency: NINDS NIH HHS, United States
    Id: R01 NS124802
  • Agency: NINDS NIH HHS, United States
    Id: R01 NS104219
  • Agency: NINDS NIH HHS, United States
    Id: R01 NS122908
  • Agency: NINDS NIH HHS, United States
    Id: R01 NS096746

Publication data is provided by the National Library of Medicine ® and PubMed ®. Data is retrieved from PubMed ® on a weekly schedule. For terms and conditions see the National Library of Medicine Terms and Conditions.

This is a list of tools and resources that we have found mentioned in this publication.


Fiji (tool)

RRID:SCR_002285

Software package as distribution of ImageJ and ImageJ2 together with Java, Java3D and plugins organized into coherent menu structure. Used to assist research in life sciences.

View all literature mentions

PANTHER (tool)

RRID:SCR_004869

System that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in absence of direct experimental evidence. Orthologs view is curated orthology relationships between genes for human, mouse, rat, fish, worm, and fly.

View all literature mentions

STRING (tool)

RRID:SCR_005223

Database of known and predicted protein interactions. The interactions include direct (physical) and indirect (functional) associations and are derived from four sources: Genomic Context, High-throughput experiments, (Conserved) Coexpression, and previous knowledge. STRING quantitatively integrates interaction data from these sources for a large number of organisms, and transfers information between these organisms where applicable. The database currently covers 5''214''234 proteins from 1133 organisms. (2013)

View all literature mentions

WebGestalt: WEB-based GEne SeT AnaLysis Toolkit (tool)

RRID:SCR_006786

Web based gene set analysis toolkit designed for functional genomic, proteomic, and large-scale genetic studies from which large number of gene lists (e.g. differentially expressed gene sets, co-expressed gene sets etc) are continuously generated. WebGestalt incorporates information from different public resources and provides a way for biologists to make sense out of gene lists. This version of WebGestalt supports eight organisms, including human, mouse, rat, worm, fly, yeast, dog, and zebrafish.

View all literature mentions

Imaris (tool)

RRID:SCR_007370

Imaris provides range of capabilities for working with three dimensional images. Uses flexible editing and processing functions, such as interactive surface rendering and object slicing capabilities. And output to standard TIFF, Quicktime and AVI formats. Imaris accepts virtually all image formats that are used in confocal microscopy and many of those used in wide-field image acquisition.

View all literature mentions

N2 (tool)

RRID:WB-STRAIN:WBStrain00000001

Caenorhabditis elegans with name Caenorhabditis elegans wild isolate. from WB.

View all literature mentions

Anti-Ubiquitin Antibody (P4D1) (antibody)

RRID:AB_628423

This monoclonal targets Ubiquitin

View all literature mentions

HSP27 antibody (antibody)

RRID:AB_2295540

This polyclonal targets HSP27

View all literature mentions

Anti-beta-Tubulin III antibody produced in rabbit (antibody)

RRID:AB_262133

This polyclonal targets beta-Tubulin III antibody produced in rabbit

View all literature mentions

VCP antibody [EPR3307(2)] (antibody)

RRID:AB_10862588

This monoclonal targets VCP antibody [EPR3307(2)]

View all literature mentions

MAP2 antibody - Neuronal Marker (antibody)

RRID:AB_2138153

This polyclonal targets MAP2 antibody - Neuronal Marker

View all literature mentions

VCP antibody (antibody)

RRID:AB_1952544

This polyclonal targets VCP

View all literature mentions

Myc-Tag (9B11) Mouse mAb (antibody)

RRID:AB_331783

This monoclonal targets c-Myc

View all literature mentions

Normal Rabbit IgG (antibody)

RRID:AB_1031062

This isotype control targets not applicable

View all literature mentions

P62/SQSTM1 antibody (antibody)

RRID:AB_10694431

This polyclonal targets P62/SQSTM1

View all literature mentions

Anti-Choline Acetyltransferase Antibody (antibody)

RRID:AB_2079751

This polyclonal targets Choline Acetyltransferase

View all literature mentions

HUES 3 Hb9::GFP (cell line)

RRID:CVCL_X724

Cell line HUES 3 Hb9::GFP is a Embryonic stem cell with a species of origin Homo sapiens (Human)

View all literature mentions

HEK293T (cell line)

RRID:CVCL_0063

Cell line HEK293T is a Transformed cell line with a species of origin Homo sapiens (Human)

View all literature mentions