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Hierarchical Attribute Matching Mechanism for Elastic Registration (RRID:SCR_001960)Copy Citation Copied
URL: https://www.rad.upenn.edu/sbia/software/index.html#hammer
Proper Citation: Hierarchical Attribute Matching Mechanism for Elastic Registration (RRID:SCR_001960)
Description: Software package that performs high-dimensional warping of brain images. Standard voxel-based analysis can be applied to these tissue density maps, in order to examine regional volumetrics, effects of disease, or correlations with clinical measurements. In order to make HAMMER as robust as possible to different acquisition protocols and conditions, they provide a distribution that assumes that images have been skull-stripped and segmented into gray matter, white matter, and ventricular CSF. We have other software tools that can perform these steps, including skull stripping, reorientation and reslicing, and segmentation tools. Importantly, they use 250 for WM, 150 for GM, 50 for Ventricles and 10 for CSF in the tissue-segmented brain images. Current modules used for group analysis: Labeling subject brain using a manually-labeled brain Model; Generating RAVENS map for each tissue (WM, GM, VN); Normalizing subject brain images
Abbreviations: HAMMER
Synonyms: HAMMER: Deformable Registration
Resource Type: data processing software, software resource, software application
Defining Citation: PMID:12575879, PMID:12507441
Keywords: magnetic resonance, software package, data processing, high dimensional warping
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