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URL: http://code.google.com/p/psom/
Proper Citation: Pipeline System for Octave and Matlab (RRID:SCR_009637)
Description: A lightweight software library to manage complex multi-stage data processing. A pipeline is a collection of jobs, i.e. Matlab or Octave codes with a well identified set of options that are using files for inputs and outputs. To use PSOM, the only requirement is to generate a description of a pipeline in the form of a simple Matlab / Octave structure. PSOM then automatically offers the following services: * Run jobs in parallel using multiple CPUs or within a distributed computing environment. * Generate log files and keep track of the pipeline execution. These logs are detailed enough to fully reproduce the analysis. * Handle job failures : successful completion of jobs is checked and failed jobs can be restarted. * Handle updates of the pipeline : change options or add jobs and let PSOM figure out what to reprocess !
Abbreviations: PSOM
Resource Type: software resource, software application, software toolkit, workflow software, software library, data processing software
Defining Citation: PMID:22493575
Keywords: reusable library, linux, macos, matlab, microsoft, posix/unix-like, windows, workflow, octave, pipeline
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