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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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elements of morphology Resource Report Resource Website 1+ mentions |
elements of morphology (RRID:SCR_003707) | standard specification, narrative resource, international standard specification, data or information resource, data set | Data set of standardized terms used to describe human morphology including definitions of terms for the craniofacies in general, the major components of the face, and the hands and feet. This provides a uniform and internationally accepted terms to describe the human phenotype. | dysmorphology, morphology, malformation, face, hand, foot, facial feature, phenotype, nose, philtrum, ear, lip, mouth, oral region, head, face, periorbital, terminology, vocabulary |
is used by: NIF Data Federation has parent organization: National Human Genome Research Institute |
NIH | PMID:19127575 PMID:19125436 PMID:19125433 PMID:19125428 PMID:19152422 PMID:19152421 |
Public domain, Acknowledgement requested | nlx_157874 | SCR_003707 | Human Malformation Terminology, Elements of Morphology: Human Malformation Terminology | 2026-08-03 09:32:31 | 4 | ||||||
|
NITRC-IR Resource Report Resource Website 1+ mentions |
NITRC-IR (RRID:SCR_004162) | NITRC IR | data repository, image database, data or information resource, database, image repository, catalog, storage service resource, service resource | Data repository for neuroimaging data in DlCOM and NIFTI formats. It allows users to search for and freely download publicly available data sets relating to normal subjects and those with diagnoses such as: schizophrenia, ADHD, autism, and Parkinson's disease.XNAT-based image registry that supports both NIfTI and DICOM images to promote re-use and integration of NIH funded data. | database, neuroimaging, magnetic resonance, mri, image collection, nifti, dicom |
uses: XNAT Central is used by: NIF Data Federation lists: 1000 Functional Connectomes Project lists: studyforrest.org is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: 1000 Functional Connectomes Project is related to: NITRC Enhanced Services has parent organization: NeuroImaging Tools and Resources Collaboratory (NITRC) |
Bipolar Disorder, Schizophrenia, Parkinson's disease, ADHD | NINDS R44 NS074540; NIBIB U24 EB023398 |
PMID:26044860 | Free, Available for download, Freely available | nlx_18447, SCR_015623 | SCR_004162 | NeuroImaging Tools and Resources Collaboratory Image Repository, NITRC Image Repository | 2026-08-03 09:32:37 | 8 | ||||
|
PubChem Resource Report Resource Website 10000+ mentions |
PubChem (RRID:SCR_004284) | data repository, data or information resource, database, storage service resource, service resource | Collection of information about chemical structures and biological properties of small molecules and siRNA reagents hosted by the National Center for Biotechnology Information (NCBI). | collection, information, data, chemical, structure, biological, property, small, molecule, siRNA reagent, bio.tools |
uses: ChEMBL is used by: NIF Data Federation is used by: Pathway Analysis Tool for Integration and Knowledge Acquisition is used by: GEROprotectors is listed by: OMICtools is listed by: re3data.org is listed by: NIH Data Sharing Repositories is listed by: bio.tools is listed by: Debian is related to: NCBI Structure is related to: Molecular Libraries Program is related to: NIH Data Sharing Repositories is related to: PubChem BioAssay has parent organization: NCBI is parent organization of: PubChem Substance works with: MiMeDB |
NLM | PMID:21418625 PMID:21272340 PMID:20970519 PMID:20298522 PMID:19825798 |
Free, Freely Available | biotools:pubchem, nlx_42691, nlx_29861, r3d100010538, OMICS_01587 | https://bio.tools/pubchem, https://doi.org/10.17616/R3GW37 | SCR_004284 | 2026-08-03 09:32:38 | 13540 | ||||||
|
Gray Matters Resource Report Resource Website |
Gray Matters (RRID:SCR_004433) | narrative resource, podcast, data or information resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented on September 06, 2013. Gray Matters is a radio series on brain topics that has been produced since 1994 by Public Radio International in association with the Dana Alliance. More than 25 programs have been created on topics ranging from stress, neuroethics, learning throughout life and sports, fitness and the Brain. Dana Alliance members serve as advisers to Gray Matters programming and are interviewed during the programs. The transcripts are also available. |
is used by: NIF Data Federation is related to: Integrated Podcasts |
The Dana Foundation | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_54435 | SCR_004433 | Gray Matters Radio Series | 2026-08-03 09:32:40 | 0 | ||||||||
|
NeuroPod Resource Report Resource Website |
NeuroPod (RRID:SCR_004329) | NeuroPod | narrative resource, podcast, data or information resource | NeuroPod is the neuroscience podcast from Nature, produced in association with the Dana Foundation. Each month, join us as we delve into the latest research on the brain, from its molecular makings to the mysteries of the mind. We''ll also be bringing you the latest news from neuroscience conferences around the globe, along with special reports on hot areas in neuroscience. |
is used by: NIF Data Federation is related to: Integrated Podcasts |
The Dana Foundation | nlx_34737 | SCR_004329 | NeuroPod Podcasts | 2026-08-03 09:32:39 | 0 | ||||||||
|
Health.Data.gov Resource Report Resource Website 10+ mentions |
Health.Data.gov (RRID:SCR_004386) | data or information resource, software resource, database | Public, high-value federal datasets, tools, and applications using data about health and health care gathered from agencies across the U.S. government. | health, medicare, medicaid, epidemiology, treatment, population statistics, biomedical research, safety, administrative, health care cost, quality measurement, health care provider, children's health, child, health care, data set |
is used by: NIF Data Federation is used by: Integrated Datasets has parent organization: Data.gov |
Public, Acknowledgement requested | r3d100010593, nlx_143714 | https://doi.org/10.17616/R3589H | http://www.data.gov/communities/node/81/data_tools | SCR_004386 | US HealthData Gov, Health Data and Tools, Health.Data.gov Data Tools, Health Data and Tools Available on Data.gov | 2026-08-03 09:32:31 | 11 | ||||||
|
TAIR Resource Report Resource Website 5000+ mentions |
TAIR (RRID:SCR_004618) | TAIR, AGI LocusCode | data or information resource, database | Database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. Data available includes the complete genome sequence along with gene structure, gene product information, metabolism, gene expression, DNA and seed stocks, genome maps, genetic and physical markers, publications, and information about the Arabidopsis research community. Gene product function data is updated every two weeks from the latest published research literature and community data submissions. Gene structures are updated 1-2 times per year using computational and manual methods as well as community submissions of new and updated genes. TAIR also provides extensive linkouts from data pages to other Arabidopsis resources. The data can be searched, viewed and analyzed. Datasets can also be downloaded. Pages on news, job postings, conference announcements, Arabidopsis lab protocols, and useful links are provided. | genetic, molecular biology, gene, genome, structure, product, metabolism, gene expression, dna, seed stock, genome map, genetic marker, physical marker, genome sequence, gene product, blast, experimental protocol, gold standard |
is used by: NIF Data Federation is listed by: OMICtools is listed by: re3data.org is listed by: DataCite is related to: AmiGO is related to: Saskatoon Arabidopsis T-DNA mutant population SK Collection is related to: CLENCH has parent organization: Carnegie Institution for Science is parent organization of: TAIR Keyword Browser is parent organization of: PubSearch |
NSF DBI-0850219; corporate and nonprofit organizations |
PMID:22140109 PMID:17986450 PMID:12444417 PMID:12519987 PMID:18287693 |
r3d100010185, nlx_61477, OMICS_01662 | https://doi.org/10.17616/R3QW21 | SCR_004618 | AGI LocusCode, The Arabidopsis Information Resource | 2026-08-03 09:32:42 | 7421 | |||||
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GeneDB Lmajor Resource Report Resource Website 1+ mentions |
GeneDB Lmajor (RRID:SCR_004613) | GeneDB_Lmajor, GeneDB Lmajor, GeneDB L. major, | production service resource, data analysis service, service resource, database, analysis service resource, data or information resource | Database of the most recent sequence updates and annotations for the L. major genome. New annotations are constantly being added to keep up with published manuscripts and feedback from the Trypanosomatid research community. You may search by Protein Length, Molecular Mass, Gene Type, Date, Location, Protein Targeting, Transmembrane Helices, Product, GO, EC, Pfam ID, Curation and Comments, and Dbxrefs. BLAST and other tools are available. Leishmania species cause a spectrum of human diseases in tropical and subtropical regions of the world. We have sequenced the 36 chromosomes of the 32.8-megabase haploid genome of Leishmania major (Friedlin strain) and predict 911 RNA genes, 39 pseudogenes, and 8272 protein-coding genes, of which 36% can be ascribed a putative function. These include genes involved in host-pathogen interactions, such as proteolytic enzymes, and extensive machinery for synthesis of complex surface glycoconjugates. The Pathogen Genomics group at the Wellcome Trust Sanger Institute played a major role in sequencing the genome of Leishmania major (see Ivens et al.) Details of the centres involved and which chromosomes they sequenced, are given. The sequence data were obtained by adopting several parallel approaches, including complete cosmid sequencing, whole chromosome shotguns and/or BAC sequencing/skimming. The Leishmania parasite is an intracellular pathogen of the immune system targeting macrophages and dendritic cells. The disease Leishmaniasis affects the populations of 88 counties worldwide with symptoms ranging from disfiguring cutaneous and muco-cutaneous lesions that can cause widespread destruction of mucous membranes to visceral disease affecting the haemopoetic organs. In collaboration with GeneDB, the EuPathDB genomic sequence data and annotations are regularly deposited on TriTrypDB where they can be integrated with other datasets and queried using customized queries. | genome, gene, rna gene, rna, pseudogene, protein-coding, function, host-pathogen interaction, interaction, proteolytic enzyme, glycoconjugate, sequence annotation |
is used by: NIF Data Federation is related to: AmiGO is related to: TriTrypDB has parent organization: GeneDB |
Wellcome Trust | PMID:16020728 | nlx_60997 | SCR_004613 | Leishmania major strain Friedlin, Leishmania major strain Friedlin homepage on GeneDB, GeneDB Leishmania major, Leishmania major strain Friedlin on GeneDB | 2026-08-03 09:32:38 | 7 | ||||||
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MPO Resource Report Resource Website 10+ mentions |
MPO (RRID:SCR_004855) | MPO, MP | controlled vocabulary, data or information resource, ontology | Community ontology to provide standard terms for annotating mammalian phenotypic data. It has a hierarchical structure that permits a range of detail from high-level, broadly descriptive terms to very low-level, highly specific terms. This range is useful for annotating phenotypic data to the level of detail known and for searching for this information using either broad or specific terms as search criteria. Your input is welcome. | mus, phenotype, obo |
is used by: NIF Data Federation is listed by: BioPortal is related to: Rat Genome Database (RGD) is related to: MouseBook is related to: Neurocarta is related to: phenomeNET has parent organization: OBO has parent organization: Mouse Genome Informatics (MGI) |
PMID:17989687 | The community can contribute to this resource | nlx_83784 | http://obofoundry.org/cgi-bin/detail.cgi?id=mammalian_phenotype, http://purl.bioontology.org/ontology/MP | SCR_004855 | Mammalian Phenotype Ontology | 2026-08-03 09:32:32 | 19 | |||||
|
Neurology Podcast Resource Report Resource Website |
Neurology Podcast (RRID:SCR_004887) | Neurology Podcast | narrative resource, podcast, data or information resource | Neurology Podcast is a weekly podcast of content from Neurology, the official journal of the American Academy of Neurology. The Neurology podcast is introduced by Editor-in-Chief Robert A. Gross, MD, PhD, who discusses several highlighted articles in the current issue of the journal. The podcast features an interview with the author of an article in the current issue that summarizes the paper and discusses the main findings and clinical implications for neurologists. It concludes with the Lesson of the Week, a short segment on a topic such as a laboratory technique, statistical methods, or historical neurology. |
is used by: NIF Data Federation is related to: Integrated Podcasts has parent organization: American Academy of Neurology |
nlx_85698 | SCR_004887 | Neurology Podcasts | 2026-08-03 09:32:33 | 0 | |||||||||
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PANTHER Resource Report Resource Website 5000+ mentions |
PANTHER (RRID:SCR_004869) | PANTHER | production service resource, data analysis service, ontology, service resource, database, analysis service resource, controlled vocabulary, data or information resource | System that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in absence of direct experimental evidence. Orthologs view is curated orthology relationships between genes for human, mouse, rat, fish, worm, and fly., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | hidden markov model, human, mouse, genome, protein, gene, function, pathway, ortholog, phylogenetic tree, gene ortholog, protein family, gene function, evolution, data set, molecular function, biological process, cellular component, transcript, FASEB list |
is used by: NIF Data Federation is used by: YPED is used by: EMBRYS is related to: Gene Ontology is related to: Pathway Commons is related to: KOBAS has parent organization: University of Southern California; Los Angeles; USA is parent organization of: PANTHER Evolutionary analysis of coding SNPs |
NIGMS GM081084 | PMID:23193289 PMID:20015972 PMID:12952881 |
THIS RESOURCE IS NO LONGER IN SERVICE | SCR_015893, nlx_84521 | SCR_004869 | PANTHER Classification System, Protein ANalysis THrough Evolutionary Relationships Classification System, Protein ANalysis THrough Evolutionary Relationships, PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System | 2026-08-03 09:32:32 | 8331 | |||||
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BrainPod Resource Report Resource Website |
BrainPod (RRID:SCR_004779) | BrainPod | narrative resource, podcast, data or information resource | BrainPod is the podcast from the journal Neuropsychopharmacology. Join us as we delve into the latest basic and clinical research that advance our understanding of the brain and behavior, featuring highlighted content from a top journal in fields of neuroscience, psychiatry, and pharmacology. |
is used by: NIF Data Federation is related to: Integrated Podcasts |
nlx_77376 | SCR_004779 | NPP Podcast, Neuropsychopharmacology Podcast, BrainPod Podcast | 2026-08-03 09:32:43 | 0 | |||||||||
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Naturejobs Resource Report Resource Website |
Naturejobs (RRID:SCR_005151) | Naturejobs | narrative resource, data or information resource, job resource | Search for the widest range of science jobs with thousands of vacancies advertised globally on the site. Employers range from top international pharmaceutical and biotechnology companies to highly respected academic and government institutions. Job seekers can find a wide range of scientific career information and news as well as expert advice, all free to access. What''s more, employers can post jobs for free. | employment, science, life science, physical science, applied science, clinical medicine, news, clinical, medicine, database, career |
is used by: NIF Data Federation is listed by: OMICtools is related to: Integrated Jobs has parent organization: Nature Publishing Group |
Free, The community can contribute to this resource | OMICS_01824, nlx_144163 | SCR_005151 | naturejobs.com, naturejobs.com - The premier science jobs recruitment website | 2026-08-03 09:32:48 | 0 | |||||||
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LabSpaces Resource Report Resource Website |
LabSpaces (RRID:SCR_005169) | LabSpaces | portal, community building portal, experimental protocol, blog, narrative resource, data or information resource | LabSpaces.net is a social network for the scientific community designed to spread scientific news, maintain and create friendships, and harbor collaboration through the internet. The site serves as a web profile for researchers and labs, and is also a community for active communication in the sciences. Current Features LabSpaces offers a wide range of features that will attract and engage researchers. Some of these features include: A Science News feed updated daily with ~40 news articles, UserProfiles, Friends, A Messaging system, Groups, Lab Profiles with Lab members, Lab Picture albums, Collaboration Profiles, Science Discussion Forum, Publication Database, Protocol Database, and free Blogs upon request. | research, social network, science, news |
is used by: NIF Data Federation is used by: Integrated Blogs is parent organization of: Lady Scientist is parent organization of: H2SO4Hurts is parent organization of: Daring Nucleic Adventures - genegeek |
nlx_144199 | SCR_005169 | LabSpaces.net, Lab Spaces | 2026-08-03 09:32:37 | 0 | ||||||||
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NIH Neuroscience Microarray Consortium Resource Report Resource Website 1+ mentions |
NIH Neuroscience Microarray Consortium (RRID:SCR_004930) | data repository, production service resource, data analysis service, data or information resource, database, storage service resource, analysis service resource, service resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented on April 24, 2012. (no longer being funded) The NIH Microarray Consortium provides for-fee services to a community of NIH grantees, together with a more limited set of services to the public. The primary goal of this consortium is to move basic and translational research forward through acquisition and dissemination of high quality genomic data. This site includes a repository of microarray data sets and offers one-click links to public projects. These datasets were generated by various researchers on these platforms: Affymetrix, Agilent, Ambion, cDNA, Illumina, and Operon. The species currently covered are: Arabidopsis, Bovine, chicken, C. Elegans, Drosophila, Human, Macaca mulatta (Rhesus macaque), Mouse, Rat, Songbird, Xenopus, Yeast, and zebra finch. Basic search functions allows users to choose multiple options for finding the projects that interest them, and raw data files can also be downloaded after user registration. Web-based data analysis tools are also available. Scientists can analyze microarray data from the consortium repository or investigators can upload outside data for analysis. | arabidopsis, bos taurus, chicken, caenorhabditis elegans, drosophila, human, rhesus monkey, mouse, rat, songbird, xenopus, yeast, zebra finch |
is used by: NIF Data Federation is related to: Songbird Brain Transcriptome Database has parent organization: National Institutes of Health |
NIH Blueprint for Neuroscience Research | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-00074 | http://arrayconsortium.tgen.org, http://np2.ctrl.ucla.edu/np2/home.do | SCR_004930 | NIH Neuroscience Microarray Consortium | 2026-08-03 09:32:33 | 4 | ||||||
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IXI dataset Resource Report Resource Website 10+ mentions |
IXI dataset (RRID:SCR_005839) | IXI dataset | data set, data or information resource, portal, project portal | Data set of nearly 600 MR images from normal, healthy subjects, along with demographic characteristics, collected as part of the Information eXtraction from Images (IXI) project available for download. Tar files containing T1, T2, PD, MRA and DTI (15 directions) scans from these subjects are available. The data has been collected at three different hospitals in London: * Hammersmith Hospital using a Philips 3T system * Guy''s Hospital using a Philips 1.5T system * Institute of Psychiatry using a GE 1.5T system | neuroimaging, structural mri assay, magnetic resonance angiography, nifti, t1, t2, pd, dti, demographic, normal, healthy, adult, mri, brain, image collection |
is used by: NIF Data Federation has parent organization: Imperial College London; London; United Kingdom |
Normal, Healthy | EPSRC GR/S21533/02 | Acknowledgement requested | nlx_149360 | http://brain-development.org/ | SCR_005839 | Information eXtraction from Images dataset | 2026-08-03 09:32:48 | 28 | ||||
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Genetic Analysis Software Resource Report Resource Website 1+ mentions |
Genetic Analysis Software (RRID:SCR_013155) | GAS | database, catalog, data or information resource, software resource, data set | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 4th,2023. Listing of computer software for the gene mapping community on the following topics: genetic linkage analysis for human pedigree data, QTL analysis for animal/plant breeding data, genetic marker ordering, genetic association analysis, haplotype construction, pedigree drawing, and population genetics. The inclusion of a program should not be interpreted as an endorsement to that program from us. In the last few years, new technology produces new types of genetic data, and the scope of genetic analyses change dramatically. It is no longer obvious whether a program should be included or excluded from this list. Topics such as next-generation-sequencing (NGS), gene expression, genomics annotation, etc. can all be relevant to a genetic study, yet be specialized topics by themselves. Though programs on variance calling from NSG can be in, those can sequence alignment might be out; programs on eQTL can be in, those on differential expression might be out. This page was created by Dr. Wentian Li, when he was at Columbia University (1995-1996). It was later moved to Rockefeller University (1996-2002), and now takes its new home at North Shore LIJ Research Institute (2002-now). The present copy is maintained by Jurg Ott as a single file. More than 240 programs have been listed by December 2004, more than 350 programs by August 2005, close to 400 programs by December 2006, and close to 480 programs by November 2008, and over 600 programs by October 2012. A version of the searchable database was developed by Zhiliang Hu of Iowa State University, and a recent round of updating was assisted by Wei JIANG of Harbin Medical School. Some earlier software can be downloaded from EBI: ftp://ftp.ebi.ac.uk/pub/software/linkage_and_mapping/ (Linkage and Mapping Software Repository), and http://genamics.com/software/index.htm may contain archived copy of some programs. | gene mapping, gene, genetic, genomic, model, modeling, software program, genetic linkage analysis, qtl analysis, genetic marker order, genetic association analysis, haplotype construction, pedigree drawing, population genetics |
is used by: NIF Data Federation lists: EM-DECODER lists: ENTROPY BLOCKER lists: SOAP lists: ADEGENET lists: 2LD lists: SQTL lists: POLYMORPHISM lists: EDAC lists: FEST lists: GENEHUNTER SAD lists: COMDS lists: CHAPLIN lists: CRIMAP lists: DCHIP LINKAGE lists: FLOSS lists: HAP 1 lists: HAPSCOPE lists: LDB/LDB+ lists: LOCUSMAP lists: MRH lists: PEDIGREE-VISUALIZER lists: PEDPHASE lists: QTL CAFE lists: RHMAPPER lists: R/GC, R/GCF lists: R/GWAPOWER lists: R/WEIGHTED FDR lists: SIMM lists: SOLAR lists: TDTHAP lists: HWESTRATA lists: TDT-PC lists: EQTL EXPLORER lists: GAS2 lists: LDMET lists: LAMBDAA lists: EIGENSOFT/EIGENSTRAT lists: Happy lists: LAMP lists: CLUSTAG lists: OSA lists: SIMIBD lists: SNPSTATS lists: Haploview lists: QGene lists: PAWE-3D lists: MILD lists: PEDPLOT lists: GS-EM lists: PEDSCRIPT lists: Multipoint Identical-by-descent Method lists: PARENTE lists: Integrated Software lists: PEDRAW/WPEDRAW lists: POPDIST lists: TDTASP lists: TDTPOWER lists: TDT/S-TDT lists: HAPLOBLOCKFINDER lists: HAPMIXMAP lists: Genotype-IBD Sharing Test lists: LDGROUP lists: LDHAT lists: LDMAP lists: LDHEATMAP lists: LDSELECT lists: LINKAGE lists: LDSUPPORT lists: FASTLINK lists: LINKAGE - CEPH lists: LSP lists: Whap lists: TREESCAN lists: Graphical Overview of Linkage Disequilibrium lists: MAIA lists: MULTIMAP lists: R/ADEGENET lists: R/ENTROPY BLOCKER lists: BEAM lists: BMAPBUILDER lists: POPGEN lists: RTDT lists: R/SPECTRAL-GEM lists: R/STEPWISE lists: HAPLOCLUSTERS lists: TKMAP lists: CLUMP lists: FAMOZ lists: INTEGRAYEDMAP lists: SIBMED lists: POOLSCORE lists: LDA lists: LAPSTRUCT lists: BETA lists: ALTree lists: TRANSMIT lists: ETDT lists: R/TDTHAP lists: RVTESTS lists: S lists: ET-TDT lists: ILR lists: MAPCREATOR lists: MAPMAKER/SIBS lists: MAP MANAGER QT lists: MGA-MAPF2 lists: Pedigree-Draw lists: FASTMAP (1) lists: ASPEX lists: PEDJAVA lists: PEDPEEL lists: SIMCOAL lists: SNPHAP lists: SNPHARVESTER lists: SNP-HWE lists: TAGSNP lists: FASTMAP (2) lists: FASTSLINK lists: GASP lists: GENOGRAM-MAKER lists: GENEHUNTER++SAD lists: GENEPI.JAR lists: BDGEN lists: TLINKAGE lists: GENOME lists: EASYPOP lists: GENOMESIMLA lists: TRAP lists: CARTHAGENE lists: ACT lists: ADMIXMAP lists: 2DMAP lists: ALBERT lists: 2SNP lists: AGEINF lists: ALLASS lists: PEDIGREEQUERY lists: PATH lists: MULTIQTL lists: SPERMSEG lists: FASTER lists: Platypus lists: KIN lists: SNP ASSISTANT lists: GRONLOD lists: COMBIN lists: ARLEQUIN lists: SEGPATH lists: JENTI lists: SCOUT lists: HAPLOREC lists: UNPHASED lists: POWER lists: HAPLO 1 lists: HAPLO 2 lists: CHIP2SPELL lists: MAP MANAGER QTX lists: G-MENDEL lists: ASSOCIATIONVIEWER lists: WHICHRUN lists: GENECLASS lists: MAREYMAP lists: HELIXTREE lists: SVCC lists: GENEHUNTER-MODSCORE lists: FAMHAP lists: BAMA lists: WEBQTL lists: HAPLOVISUAL lists: CASPAR lists: GC/GCF lists: MIXSCORE lists: POWQ lists: QTLNetwork lists: SIMULAPLOT lists: SQTDT/SPDT lists: FESTA lists: BOTTLENECK lists: PAP lists: QUANTO lists: R/QTL lists: SNPEM lists: GENEPOOL lists: EPISTACY lists: VITESSE lists: LEA lists: DMAP lists: MOSCPHASER lists: UMAKE lists: TDT-AE lists: HAPLOWSER lists: STEPC lists: RECORD lists: QUTIE lists: R/COMPOSITELD lists: FINESSE lists: R/EHP lists: R/HCLUST lists: STEPWISE lists: genehunter-imprinting lists: PBAT lists: R/BARS lists: HARDY lists: R/ARP.GEE lists: R/COVIBD lists: STRAT lists: TREELD lists: TUNA lists: SIBSIM lists: IGG lists: ALLELIX lists: ALLEGRO lists: ALOHOMORA lists: ALP lists: AMELIA lists: ANALYZE lists: ANCESTRY lists: APE lists: BARS lists: APL-OSA lists: APM lists: ARIEL lists: GENOMIZER lists: ASP/ASPSHARE lists: BIMBAM lists: BIOIDE lists: BIOLAD-DB lists: BLADE lists: BLOCK lists: BOOLD lists: BOOSTRAPPER lists: BPPH lists: BQTL lists: DNABASER lists: Calculator for Association with Two Stage design lists: CC-QLS lists: CCRAVAT lists: CCREL lists: CEPH2CRI lists: CEPH2MAP lists: EVOKER lists: CFC lists: CHECKHET lists: MATLINK lists: CHECKMATRIX lists: CHIAMO lists: CHROMOSCAN lists: CHROMOSEG lists: COPE lists: HCLUST lists: COVIBD lists: CRIMAP-PVM lists: CROSSFIND lists: DGENE lists: EHPLUS lists: DHSMAP lists: DISENTANGLER lists: MAKEPED lists: DOLINK lists: DPPH lists: GREGOR lists: EAGLET lists: EASYLINKAGE/EASYLINKAGE-PLUS lists: EH lists: EHAP lists: EHP lists: EMLD lists: EPDT lists: ERPA lists: EXOMEPICKS lists: R/META lists: FASTEHPLUS lists: FASTLINK lists: FBAT lists: FINETTI lists: FIRSTORD lists: FISHER lists: GAIA lists: GAP lists: GAS lists: GCHAP lists: GDA lists: GEMS lists: GENECOUNTING lists: GENEFINDER lists: GENEHUNTER lists: GENEHUNTER-IMPRINTING lists: GENEHUNTER-PLUS lists: GENEPOP lists: GENERECON lists: GENESPRING GT lists: GENIE lists: GENETIC POWER CALCULATOR lists: GENETSIM lists: GENOOM lists: GENEVAR lists: GENEWEAVER lists: GENOCHECK lists: GENOPROOF lists: GENTOOLS lists: GEST lists: GEVALT lists: GGT lists: GHOST lists: GLIDERS lists: GLUE lists: GMA lists: GMCHECK lists: GSMA lists: GTOOL lists: GWAPOWER lists: HAP 2 lists: HAPAR lists: HAPASSOC lists: HAPBLOCK lists: HAPGEN lists: HAPINFERX lists: HAPLOBLOCK lists: HAPLOBUILD lists: HAPLOPOOL lists: HAPLORE lists: HAPLO.STAT lists: HAPLOT lists: HAPLOTTER lists: TWOLOC lists: HAPLOTYPE ESTIMATION lists: HAPLOTYPER lists: HAPMINER lists: HAP-SAMPLE lists: HAPSIMU lists: HIT lists: HOMOG/HOMOGM lists: HOTSPOTTER lists: HPLUS lists: HS-TDT lists: HTR lists: HTSNPER lists: MDR-PDT lists: INTERSNP lists: IMPUTE lists: NOPAR lists: JLIN lists: JOINMAP lists: JPSGCS lists: J/QTL lists: KING lists: LAMARC lists: LINKAGE-IMPRINT lists: LINKBASE lists: LIPED lists: LNKTOCRI lists: LOCUSZOOM lists: LOGINSERM ESTIHAPLO lists: LOH-LINKAGE lists: LOKI lists: LOT lists: L-POP lists: LRP lists: LRTAE lists: LTSOFT lists: MADMAPPER lists: Marker And Gene Interpolation and Correlation lists: MALDSOFT lists: MAMA lists: MANTEL-STRUCT lists: MAP/MAP+/MAP+H/MAP2000 lists: MAPCHART lists: MIDAS lists: MAPDISTO lists: MAPDRAW lists: MAPINSPECT lists: MAPL lists: MARGARITA lists: MDBLOCKS lists: MAPMAKER/EXP lists: MAPMAKER/HOMOZ lists: MAPMAKER/QTL lists: MAPQTL lists: MCQTL lists: MEGA2 lists: MEGASNPHUNTER lists: MENDEL lists: MERLIN lists: MFLINK lists: MINIMAC lists: MINSAGE lists: MITPENE lists: MKGST lists: MMDRAWER lists: MLBGH lists: MLD lists: MLR-TAGGING lists: PEDMANAGER lists: SAGE lists: MPDA lists: MULTIDISEQ lists: MULTIMAPPER lists: MULTIMAPPER/OUTBRED lists: MULTIPOPTAGSELECT lists: MULTISIM lists: MUTAGENESYS lists: NOCOM lists: NUCULAR lists: ONEMAP lists: OSIRIS lists: P ACT lists: PASS PEDIGREE lists: PAWE lists: PDA lists: PDPSYS lists: PDT lists: PED lists: PEDAGREE lists: PEDCHECK lists: PEDSTATS lists: PEDSYS lists: PEDVIZAPI lists: PEER lists: PHASE lists: PLABSIM lists: PL-EM lists: POINTER lists: POOL STR lists: POWERMARKER lists: POWERTRIM lists: POWTEST lists: PREPLINK lists: PREST lists: PROBMAX lists: PROC QTL lists: PROFILER lists: PRT lists: PSAT lists: SAS/GENETICS lists: PSEUDO lists: PSEUDOMARKER lists: PSEUDOMARKER.M lists: R/LDHEATMAP lists: QTL-ALL lists: QTL Cartographer lists: QTL EXPRESS lists: QU-GENE lists: RISCALW lists: RC-TDT lists: REAPER lists: RELATIVE lists: RELATIVEFINDER lists: RELCHECK lists: RELPAIR lists: RELTYPE lists: RHMAP lists: ROMPREV lists: ROSATTA SYLLEGO SYSTEM lists: R/GAP lists: R/HAPASSOC lists: R/IBDREG lists: R/LAPSTRUCT lists: R/LDGROUP lists: R/LUCA lists: R/METASIM lists: R/ONEMAP lists: R/PIAGE lists: R/POOLSCORE lists: R/POPGEN lists: R/QTLBIM lists: R/SNP.PLOTTER lists: SDMINP lists: SELSIM lists: SEQUENCE LD/SEQUENCE LDHOT lists: SIBERROR lists: SIBLINK lists: SIB-PAIR lists: SILCLOD lists: SIMLA lists: SNP CHART lists: SIMLINK lists: SIMPED lists: SIMPLE lists: SIMULA lists: SIMULATE lists: SIMUPOP lists: SIMWALK lists: START lists: SKAT lists: SLINK lists: SMOOTH lists: Suite of Nucleotide Analysis Programs lists: SNAP 3 lists: SNPALYZE lists: SNPFILE lists: SNPLINK lists: SNPP lists: SNP.PLOTTER lists: SNPTEST lists: SPAM lists: SPECTRAL-GEM lists: SPERM lists: SPIP lists: SPLAT lists: TAGSTER lists: SPLINK lists: SSAHASNP lists: SUMSTAT lists: SUP lists: SWEEP lists: TAGGER lists: TFPGA lists: TREESELECT lists: UNKNOWN lists: UTIL lists: WHAIT lists: ZAPLO lists: HAPBLOCK 2 lists: PLABQTL lists: TASSEL lists: MCLEEPS lists: SASGENE lists: PANGAEA lists: TOMCAT lists: SCORE-SEQ lists: SASQUANT lists: QMSIM lists: PIAGE lists: PEDPACK lists: INSEGT lists: IBDREG lists: GLFSINGLE/GLFTRIO/GLFMULTIPLES lists: GGSD lists: ECLIPSE lists: CHROMSCAN lists: COMPOSITELD lists: BOOST lists: ARP.GEE lists: BOREL lists: GASSOC lists: MENDELSOFT lists: PLINK/SEQ lists: POLYPHEN lists: SPREG lists: MOLKIN lists: PRESTO: Genetic Association Analysis Software lists: ENDOG lists: BEAGLECALL lists: GWASELECT lists: HEGESMA lists: SNIPPEEP lists: TAGIMPUTE lists: SNPMSTAT lists: SNP HITLINK lists: MECPM lists: R/FEST lists: MAOS lists: SUPERLINK lists: PEDFIDDLER lists: VG lists: HAPSTAT lists: QTDT lists: GRIDQTL lists: VH lists: R/QTLDESIGN lists: PyPop lists: ANTMAP lists: MDR lists: WEIGHTED FDR lists: THESIAS lists: DMLE lists: SGS lists: BAYESFST lists: HWMET lists: GRR lists: AUTOSCAN lists: TRIMHAP lists: ILLUMINUS lists: PELICAN lists: HAPLOPAINTER lists: HOMOZYGOSITYMAPPER lists: GERMLINE lists: PLINK lists: MACH 1.0 lists: BEAGLE lists: BIRDSUITE lists: BREAKDANCER lists: CAROL lists: CASAVA lists: CYRILLIC lists: DINDEL lists: GenABEL lists: GATK lists: PEDIGRAPH lists: MADELINE lists: METAL lists: OLORIN lists: PEDHUNTER lists: POLYMUTT lists: SAMTOOLS lists: SNAP - SNP Annotation and Proxy Search lists: STRUCTURE lists: SVA lists: SYZYGY lists: VAAST lists: Hapmix lists: Ancestrymap lists: Hmmer lists: PROGENY lists: VarScan lists: MORGAN lists: CMAP lists: SIMHAP lists: SIFT lists: ANNOVAR lists: Body Mass Index Calculator lists: PolyPhen: Polymorphism Phenotyping has parent organization: Feinstein Institute for Medical Research has parent organization: Iowa State University; Iowa; USA |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-33506 | http://lab.rockefeller.edu/ott/geneticsoftware | http://linkage.rockefeller.edu/soft/ | SCR_013155 | An Alphabetic List of Genetic Analysis Software | 2026-08-03 09:35:19 | 9 | |||||
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Roadmap Epigenomics Project Resource Report Resource Website 100+ mentions |
Roadmap Epigenomics Project (RRID:SCR_008924) | Roadmap Epigenomics Project | organization portal, portal, consortium, data or information resource, project portal | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 11, 2022. Project for human epigenomic data from experimental pipelines built around next-generation sequencing technologies to map DNA methylation, histone modifications, chromatin accessibility and small RNA transcripts in stem cells and primary ex vivo tissues selected to represent normal counterparts of tissues and organ systems frequently involved in human disease. Consortium expects to deliver collection of normal epigenomes that will provide framework or reference for comparison and integration within broad array of future studies. Consortium is also committed to development, standardization and dissemination of protocols, reagents and analytical tools to enable research community to utilize, integrate and expand upon this body of data. | epigenomics, genome, genetic variation, gene regulation, genomics, stem cell, primary cell, tissue, blood, lung, heart, gastrointestinal tract, brain, embryonic stem cell, fetus, adult, cell, epigenome, methylome, chip-seq, rna, breast, muscle, connective, gastrointestinal, genitourinary, fat, hematopoietic stem cell, thymus, spleen, placenta, kidney, adrenal, induced pluripotent stem cell, skin, angular gyrus, anterior caudate, cingulate gyrus, hippocampus, inferior temporal lobe, mid frontal lobe, substantia nigra, dna methylation, histone modification, chromatin, rna transcript, dna, methylation, histone, data set |
is used by: NIF Data Federation is used by: VizHub is used by: Integrated Data Annotation is listed by: 3DVC is listed by: OMICtools is related to: NCBI Epigenomics is related to: Gene Expression Omnibus is related to: Spark is related to: Deep Blue Epigenomic Data Server has parent organization: NIH Common Fund is parent organization of: Human Epigenome Atlas is parent organization of: WashU Epigenome Browser is parent organization of: VizHub |
PMID:22690667 PMID:20944595 PMID:20944597 |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_151644, OMICS_01564 | SCR_008924 | Epigenomics Program, Common Fund Epigenomics, NIH Roadmap Epigenomics Program, NIH Roadmap Epigenomics Project, Common Fund Epigenomics Program, NIH Common Fund Epigenomics, NIH Common Fund Epigenomics Program, Common Fund Roadmap Epigenomics Program | 2026-08-03 09:34:00 | 310 | ||||||
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Nature Podcast Resource Report Resource Website |
Nature Podcast (RRID:SCR_010552) | Nature Podcast | narrative resource, podcast, data or information resource | A weekly podcast which features highlighted content from the week''s edition of Nature including interviews with the people behind the science, and in-depth commentary and analysis from journalists covering science around the world. |
is used by: NIF Data Federation is related to: Integrated Podcasts |
nlx_42507 | SCR_010552 | Nature Podcasts | 2026-08-03 09:34:51 | 0 | |||||||||
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Cerebellar Platform Resource Report Resource Website 1+ mentions |
Cerebellar Platform (RRID:SCR_001700) | Cerebellar Platform | software resource, software repository | THIS RESOURCE IS NO LONGER IN SERVICE, documented January 13, 2022. Digital research archive for cerebellar research including mini-reviews of contemporary cerebellar research, list of papers and mathematical models for cerebellar operation. | electrophysiology, function, analysis, cerebellar, data, imaging, mathematical, model, molecular biology, paper, plasticity, program, review, script, structure, theory, book, cerebellum |
is used by: NIF Data Federation is related to: Integrated Software has parent organization: RIKEN Brain Science Institute |
Japan Society for the Promotion of Science | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-10193 | SCR_001700 | 2026-08-02 09:03:14 | 1 |
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