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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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University of Texas El Paso Analytical Cytology Core Facility Resource Report Resource Website |
University of Texas El Paso Analytical Cytology Core Facility (RRID:SCR_010137) | UTEP Analytical Cytology, Analytical Cytology, | core facility, data or information resource, access service resource, availability annotation standard, standard specification, narrative resource, this resource is no longer in service, nif annotation standard, service resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented January 23, 2019. Core facility that provides the following services: Zeiss LD-5 Pascal Scanning Confocal Microscope/Assisted access, Zeiss Axioskop Epifluorescence Microscope/Assisted access, Zeiss EM-10 Transmission Electron Microscope/Assisted access, Microscopy sample preparation, Observation and photography service. The Analytical Cytology Core Facility provides assistance in the designing of protocols and the use of sophisticated, well maintained and supervised equipment. Each microscope is equipped with software for image analysis, image processing and printing of digital images. Service contracts are maintained on each of the microscopes. Computers and software are regularly upgraded. Confocal workshops are held regularly to familiarize users with new techniques and new protocols. The specific aims of the Analytical Cytology Core Facility (ACCF) are: 1. to train users in the design of protocols, the fixations, sectioning, cryofixations, immunolocalizations, the use of the Zeiss EM-10, the Zeiss Axioskop epifluorescence microscope and the Zeiss Pascal scanning confocal microscope with image analysis and image processing, 2. to support new faculty in realizing their research objectives that utilize microscopy, 3. to support the productivity of the Infectious Diseases and Immunology unit, the Toxicology unit, the Neuroscience/Metabolic Disorders unit, the Statistical Consulting Laboratory and the Bioinformatics unit by assisting faculty, undergraduate, masters, doctoral and postdoctoral students in advancing biomedical research, 4. to maintain and upgrade equipment and expertise and; 5. to provide core services anticipating self-sustaining maintenance of the core facility. | confocal microscopy, fluorescent microscopy, transmission electron microscopy, labeling, immunohistochemistry assay, photography |
is listed by: Eagle I has parent organization: University of Texas at El Paso |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_156615 | http://science.utep.edu/bbrc/General/analytical-cytology | SCR_010137 | , Cytology, UTEP, Analytical | 2026-08-08 11:59:27 | 0 | ||||||
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International Classification of Primary Care Resource Report Resource Website |
International Classification of Primary Care (RRID:SCR_010262) | ICPC | ontology, data or information resource, controlled vocabulary | Ontology of the international classification of primary care (ICPC). Denmark: World Organisation of Family Doctors, 1993. | umls | is listed by: BioPortal | nlx_157453 | SCR_010262 | 2026-08-08 11:59:26 | 0 | |||||||||
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VassarStats Resource Report Resource Website 1000+ mentions |
VassarStats (RRID:SCR_010263) | software resource | Tools for performing statistical computation including: Clinical Research Calculators Probabilities Distributions Frequency Data Proportions Ordinal Data Correlation & Regression t-Tests & Procedures ANOVA ANCOVA | has parent organization: Vassar College; New York; USA | nlx_156916 | SCR_010263 | VassarStats: Website for Statistical Computation | 2026-08-08 11:59:28 | 1062 | ||||||||||
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TrueSight Resource Report Resource Website 1+ mentions |
TrueSight (RRID:SCR_009835) | TrueSight | software resource | Self-training Algorithm for Splice Junction Detection using RNA-seq. | is listed by: OMICtools | OMICS_01258 | SCR_009835 | 2026-08-08 11:59:16 | 2 | ||||||||||
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International Classification of Diseases Version 9 - Clinical Modification Resource Report Resource Website |
International Classification of Diseases Version 9 - Clinical Modification (RRID:SCR_010104) | ICD9CM | ontology, data or information resource, controlled vocabulary | Ontology of the international standard diagnostic classification for all general epidemiological, many health management purposes and clinical use. | umls | is listed by: BioPortal | nlx_157451 | SCR_010104 | 2026-08-08 11:59:17 | 0 | |||||||||
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Leaf Senescence Database Resource Report Resource Website 1+ mentions |
Leaf Senescence Database (RRID:SCR_010227) | LSD | data or information resource, database, service resource, storage service resource, data repository | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 26, 2019. Database of leaf senescence to collect SAGs, mutants, phenotypes and literature references. Leaf senescence has been recognized as the last phase of plant development, a highly ordered process regulated by genes called SAGs. By integrating the data from mutant studies and transgenic analysis, they collected many SAGs related to regulation of the leaf senescence in various species. Additionally, they have categorized SAGs according to their functions in regulation of leaf senescence and used standard criteria to describe senescence associated phenotypes for mutants. Users are welcome to submit the new SAGs. | gene, mutant, leaf, phenotype, blast, plant development, sag | has parent organization: Peking University; Beijing; China | Senescence, Aging | Postdoctoral Fellowship at Peking-Tsinghua Center for Life Sciences ; Ministry of Science and Technology of China 2009CB119101; Ministry of Agriculture of China 2010ZX08010-002; Natural Science Foundation of China 31071160; China Postdoctoral Science Foundation 2012M520108; China Postdoctoral Science Foundation 2013T60031 |
PMID:24185698 PMID:21097471 |
THIS RESOURCE IS NO LONGER IN SERVICE. | nlx_156775 | SCR_010227 | 2026-08-08 11:59:27 | 7 | |||||
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BEAST Resource Report Resource Website 5000+ mentions |
BEAST (RRID:SCR_010228) | software repository, sequence analysis software, software resource, software application, data analysis software, data processing software | A cross-platform software program for Bayesian MCMC analysis of molecular sequences. It is entirely orientated towards rooted, time-measured phylogenies inferred using strict or relaxed molecular clock models. It can be used as a method of reconstructing phylogenies but is also a framework for testing evolutionary hypotheses without conditioning on a single tree topology. BEAST uses MCMC to average over tree space, so that each tree is weighted proportional to its posterior probability. We include a simple to use user-interface program for setting up standard analyses and a suit of programs for analysing the results. | bio.tools |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: Debian is listed by: bio.tools is listed by: OMICtools is related to: TempEst is related to: BEAST2 is related to: PhyDyn has parent organization: University of Edinburgh; Scotland; United Kingdom |
DOI:10.1186/1471-2148-7-214 | nlx_156859, OMICS_04233, biotools:beast, SCR_015988 | http://www.nitrc.org/projects/beast-library, https://bio.tools/beast, https://sources.debian.org/src/beast-mcmc/ | http://beast.bio.ed.ac.uk/Main_Page | SCR_010228 | BEaST Segmentation Library, Beast Software | 2026-08-08 11:59:17 | 6777 | ||||||
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Royal College of Surgeons in Ireland; Dublin; Ireland Resource Report Resource Website 1+ mentions |
Royal College of Surgeons in Ireland; Dublin; Ireland (RRID:SCR_009786) | RCSI | university | Private university responsible for the medical speciality of surgery throughout Ireland. |
is related to: Biomedical Diagnostics Institute is parent organization of: Dublin Brain Bank is parent organization of: EPIGEN |
ISNI:0000 0004 0488 7120, grid.4912.e, nlx_143526, Wikidata:Q1124228 | https://ror.org/01hxy9878 | SCR_009786 | Royal College of Surgeons in Ireland | 2026-08-08 11:59:16 | 1 | ||||||||
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Biological Imaging Methods Ontology Resource Report Resource Website 1+ mentions |
Biological Imaging Methods Ontology (RRID:SCR_010235) | FBbi | ontology, data or information resource, controlled vocabulary | A structured controlled vocabulary of sample preparation, visualization and imaging methods used in biomedical research. | obo |
is listed by: BioPortal has parent organization: Cell Image Library (CIL) |
nlx_157334 | SCR_010235 | 2026-08-08 11:59:25 | 1 | |||||||||
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WEBLOGO Resource Report Resource Website 1000+ mentions |
WEBLOGO (RRID:SCR_010236) | software resource, data access protocol, web service, service resource | Web application to generate sequence logos, graphical representations of patterns within multiple sequence alignment. Designed to make generation of sequence logos easy. Sequence logo generator. | Generate sequence logo, pattern graphical representation, multiple sequence alignment, sequence logo generator, amino acid sequence alignment, nucleic acid sequence alignment, sequence alignment representation, bio.tools |
is listed by: Debian is listed by: bio.tools is listed by: SoftCite has parent organization: University of California at Berkeley; Berkeley; USA |
NHGRI K22 HG00056; Searle Scholars program ; NIGMS P50 GM62412 |
PMID:15173120 | Free, Available for download, Freely available | nlx_156853, biotools:weblogo_3 | http://weblogo.threeplusone.com/, https://bio.tools/weblogo_3 | SCR_010236 | WebLogo Version 2.8.2, WebLogo3, WebLogo | 2026-08-08 11:59:28 | 3980 | |||||
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Purl Resource Report Resource Website 100+ mentions |
Purl (RRID:SCR_010238) | data or information resource, narrative resource, standard specification | Web addresses that act as permanent identifiers in the face of a dynamic and changing Web infrastructure. Instead of resolving directly to Web resources, PURLs provide a level of indirection that allows the underlying Web addresses of resources to change over time without negatively affecting systems that depend on them. This capability provides continuity of references to network resources that may migrate from machine to machine for business, social or technical reasons. | nlx_156858 | SCR_010238 | Persistent Uniform Resource Locators | 2026-08-08 11:59:17 | 208 | |||||||||||
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International Classification of Functioning Disability and Health Resource Report Resource Website |
International Classification of Functioning Disability and Health (RRID:SCR_010239) | ICF | ontology, data or information resource, controlled vocabulary | A classification of health and health-related domains. These domains are classified from body, individual and societal perspectives by means of two lists: a list of body functions and structure, and a list of domains of activity and participation. Since an individual''s functioning and disability occurs in a context, the ICF also includes a list of environmental factors. | owl | is listed by: BioPortal | nlx_157452 | SCR_010239 | 2026-08-08 11:59:25 | 0 | |||||||||
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Swiss Commission for Technology and Innovation Resource Report Resource Website 1+ mentions |
Swiss Commission for Technology and Innovation (RRID:SCR_010084) | CTI | government granting agency | SCR_010084 | Commission for Technology and Innovation CTI, Commission for Technology and Innovation, Swiss Commission for Technology Innovation, Swiss Commission for Technology and Innovation CTI | 2026-08-08 11:59:27 | 1 | ||||||||||||
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Computational Biology and Functional Genomics Laboratory at Harvard Resource Report Resource Website 100+ mentions |
Computational Biology and Functional Genomics Laboratory at Harvard (RRID:SCR_010240) | software resource | A computational biology laboratory that builds and redistributes genetic software tools. |
has parent organization: Harvard University; Cambridge; United States is parent organization of: GeneSigDB |
nlx_156871 | SCR_010240 | Quackenbush Lab | 2026-08-08 11:59:28 | 221 | ||||||||||
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ieeg.org Resource Report Resource Website 50+ mentions |
ieeg.org (RRID:SCR_010000) | data or information resource, database, service resource, storage service resource, data repository | Repository for EEG data. The International Epilepsy Electrophysiology Portal is a collaborative initiative funded by the National Institutes of Neurological Disease and Stroke. This initiative seeks to advance research towards the understanding of epilepsy by providing a platform for sharing data, tools and expertise between researchers. The portal includes a large database of scientific data and tools to analyze these datasets. | data sharing, FASEB list | Epilepsy | NINDS 1 U24 NS063930-01 | nlx_157297 | SCR_010000 | International Epilepsy Electrophysiology Portal, IEEG | 2026-08-08 11:59:16 | 66 | ||||||||
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ABMapper Resource Report Resource Website 1+ mentions |
ABMapper (RRID:SCR_010242) | ABMapper | software resource | A portable, easy-to-use package for spliced alignment, junction site detection, and reads mapping. The core module was written in C++ and wrapped in PERL scripts. | is listed by: OMICtools | OMICS_01238 | SCR_010242 | ABMapper: A suffix-array based spliced alignment tool | 2026-08-08 11:59:17 | 1 | |||||||||
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Upper-Level Cancer Ontology Resource Report Resource Website |
Upper-Level Cancer Ontology (RRID:SCR_010443) | CANONT | ontology, data or information resource, controlled vocabulary | Upper-level ontology for cancer. | obo | is listed by: BioPortal | Cancer | nlx_157620 | SCR_010443 | 2026-08-08 11:59:30 | 0 | ||||||||
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Gene Expression Ontology Resource Report Resource Website 1+ mentions |
Gene Expression Ontology (RRID:SCR_010326) | GEXO | ontology, data or information resource, controlled vocabulary | An application ontology for the domain of gene expression. The ontology integrates fragments of GO and MI with data from GOA, IntAct, UniProt, NCBI, KEGG and orthology relations. | obo | is listed by: BioPortal | nlx_157413 | SCR_010326 | 2026-08-08 11:59:27 | 6 | |||||||||
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Web-Service Interaction Ontology Resource Report Resource Website |
Web-Service Interaction Ontology (RRID:SCR_010448) | WSIO | ontology, data or information resource, controlled vocabulary | Ontology that enables automated interaction with more complex Web services that are typical for example within life sciences. WSIO is however independent of the application domain and relevant for both SOAP and REST Web services, and for batch execution engines in general. If the interaction scenario with a Web service is nontrivial (and incorporates session handling), annotation with WSIO concepts will enable automatic generation of client programs, scripts, or interactive applications with a graphical user interface. WSIO also enables automation of different ways of data transfer and data un-/compression or en-/decoding. They strongly discourage providers from developing complex interaction and data-transfer/compression scenarios, however when needed, WSIO may enable smooth automated interaction with them. Future versions will support more interaction scenarios. WSIO aims to serve also as a means to standardise the complex interaction scenarios primarily within both SOAP and REST Web services, and secondarily to apply also to batch execution infrastructure in general. | obo | is listed by: BioPortal | nlx_157629 | SCR_010448 | 2026-08-08 11:59:22 | 0 | |||||||||
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General Formal Ontology Resource Report Resource Website |
General Formal Ontology (RRID:SCR_010328) | GFO | ontology, data or information resource, controlled vocabulary | A top-level ontology integrating objects and processes. | owl | is listed by: BioPortal | nlx_157416 | http://www.onto-med.de/ontologies/gfo/ | SCR_010328 | 2026-08-08 11:59:19 | 0 |
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