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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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American Society of Radiologic Technologists Resource Report Resource Website 1+ mentions |
American Society of Radiologic Technologists (RRID:SCR_001984) | ASRT | data or information resource, training resource, community building portal, portal, job resource | Society of Radiologic Technologists to advance the medical imaging and radiation therapy profession and to enhance the quality of patient care, leading and serving its members, the profession, other health care providers and the public on all issues that affect the radiologic sciences. The mission of the ASRT is to foster the professional growth of radiologic technologists by expanding knowledge through education, research and analysis; promoting exceptional leadership and service; and developing the radiologic technology community through shared ethics and values. This portal offers information on Continuing Education opportunities, and has a variety of other resources including a marketplace, news, publications, events and conferences, career center, studies and surveys, professional resources, and much more. Scholarly Journals Members can earn CE credit through the Directed Readings program in the ASRT journals, Radiologic Technology and Radiation Therapist. By maintaining continuous membership, members can earn at least 12 Category A CE credits. Answer sheets for Directed Reading Quizzes can be completed on our Web site or mailed to the ASRT for grading. You will receive pass or fail notification immediately on the Web site or ASRT will notify you within 30 days if your completed quiz is mailed. A passing grade of 75 percent or better is required to receive the assigned Category A credit. | health care, human, radiologic, radiologic sciences, technologist, radiologic technologist, medical imaging, radiation therapy, patient care | nif-0000-10661 | SCR_001984 | 2026-08-07 09:25:21 | 2 | ||||||||||
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OBART Resource Report Resource Website 1+ mentions |
OBART (RRID:SCR_001903) | OBART | web application, atlas, data or information resource, software resource | Tool that provides an interactive method to examine quantitative relationships between brain regions defined by different digital atlases or parcellation methods. Its current focus is for human brain imaging, though the techniques generalize to other domains. The method offers a quantitative answer to the nomenclature problem in neuroscience by comparing brain parts on the basis of their geometrical definitions rather than on the basis of name alone. Thus far these tools have been used to quantitatively compare eight distinct parcellations of the International Consortium for Brain Mapping (ICBM) single-subject template brain, each created using existing atlasing methods. This resources provides measures of global and regional similarity, and offers visualization techniques that allow users to quickly identify the correspondences (or lack of correspondences) between regions defined by different atlases. | atlas, brain, clinical, mapping, meta-analysis, neuroscience, visualization, label |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Brain Architecture Project has parent organization: Boston University; Massachusetts; USA |
NIMH 5R01MH084802 | PMID:19787067 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-10473 | http://www.nitrc.org/projects/obart | http://obart.brainarchitecture.org | SCR_001903 | The Online Brain Atlas Reconciliation Tool, Online Brain Atlas Reconciliation Tool | 2026-08-07 09:25:19 | 2 | |||
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InteroPorc Resource Report Resource Website 1+ mentions |
InteroPorc (RRID:SCR_002067) | InteroPorc | data or information resource, production service resource, software resource, data analysis service, software application, source code, database, analysis service resource, service resource, data analysis software, data processing software | Automatic prediction tool to infer protein-protein interaction networks, it is applicable for lots of species using orthology and known interactions. The interoPORC method is based on the interolog concept and combines source interaction datasets from public databases as well as clusters of orthologous proteins (PORC) available on Integr8. Users can use this page to ask InteroPorc for all species present in Integr8. Some results are already computed and users can run InteroPorc to investigate any other species. Currently, the following databases are processed and merged (with datetime of the last available public release for each database used): IntAct, MINT, DIP, and Integr8. | orthology, prediction, protein interaction, tool, sequenced genome, proteinprotein interaction, inferred interaction, molecular interaction, interaction, protein, bio.tools |
is listed by: bio.tools is listed by: Debian is related to: Integr8 : Access to complete genomes and proteomes is related to: IntAct is related to: MINT is related to: Database of Interacting Proteins (DIP) is related to: PSICQUIC Registry has parent organization: CEA; Gif sur Yvette; France |
European Union FELICS 021902 RII3; Marie Curie Fellowship ; French National Agency of Research ANR Biosys06_134823 SULFIRHOM; French Atomic Energy Commission |
PMID:18508856 | Open unspecified license, Acknowledgement requested | nif-0000-20816, biotools:interoporc | https://bio.tools/interoporc | SCR_002067 | InteroPorc: Automatic molecular interaction predictions, Automatic molecular interaction predictions | 2026-08-07 09:25:21 | 6 | ||||
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Yerkes National Primate Research Center Resource Report Resource Website 1000+ mentions |
Yerkes National Primate Research Center (RRID:SCR_001914) | data or information resource, portal, organization portal, service resource | Center for advancing scientific understanding and improving the health and well-being of humans and nonhuman primates. The Center conducts research in microbiology and immunology, neurologic diseases, neuropharmacology, behavioral, cognitive and developmental neuroscience, and psychiatric disorders. | NPRC, NPRC Consortium, ORIP, alzheimers disease, brain, immunology, microbiology, neurological disease, parkinsons disease, rodent, non human primate, neuropharmacology, cognitive neuroscience, developmental neuroscience, genetics |
is listed by: National Primate Research Center Consortium is related to: National Chimpanzee Brain Resource has parent organization: Emory University; Georgia; USA has parent organization: National Center for Research Resources - Primate Resources is parent organization of: Yerkes Collection Non-Human Primate Resource |
Neurological disease, Psychiatric disorder, Infectious disease, Non-infectious disease, Drug addiction, Alzheimer's disease, Parkinson's disease, AIDS, Malaria | NCRR P51 RR000165; NIH Office of the Director P51 OD011132; NIH Office of the Director U42 OD011023 |
Public, Available to researchers | nif-0000-10485 | https://orip.nih.gov/comparative-medicine/programs/vertebrate-models | SCR_001914 | Yerkes Primate Research Center, Yerkes Research Center | 2026-08-07 09:25:20 | 1313 | |||||
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NIDA Data Share Resource Report Resource Website 10+ mentions |
NIDA Data Share (RRID:SCR_002002) | data or information resource, catalog, database, service resource, storage service resource, data repository | Website which allows data from completed clinical trials to be distributed to investigators and public. Researchers can download de-identified data from completed NIDA clinical trial studies to conduct analyses that improve quality of drug abuse treatment. Incorporates data from Division of Therapeutics and Medical Consequences and Center for Clinical Trials Network. | drug of abuse, clinical, data, data sharing, human, clinical trial, experimental protocol, addiction, drug, addiction, data set, substance abuse |
is used by: NIF Data Federation is used by: Integrated Datasets is used by: NIH Heal Project is recommended by: National Library of Medicine is recommended by: BRAIN Initiative is listed by: re3data.org is related to: NIDA Networking Project: Facilitating information exchange and research collaboration is related to: Integrated Manually Extracted Annotation has parent organization: National Drug Abuse Treatment Clinical Trials Network |
NIDA | Restricted | nif-0000-21981 | http://www.ctndatashare.org/ | SCR_002002 | NIDA Clinical Trials Data Share, CTN database, CTN Data Share, NIDA CTN Data Share | 2026-08-07 09:25:20 | 25 | ||||||
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MRIWarp Resource Report Resource Website |
MRIWarp (RRID:SCR_002072) | MRIWarp | image processing software, software resource, software application, data processing software | Warping tool for intersubject registration of brain images consisting of C functions for Unix systems plus Matlab visualization utility functions. Apart from warping there are also (command line) functions for ANALYZE header information, mirroring, translation, subsampling. The package cannot only be used as a preprocessing step in function neuroimaging but also as a step in deformation-based morphometry. | mri, neuroimaging, warp, brain, pet | has parent organization: THOR Center for Neuroinformatics | PMID:10385288 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-00336 | SCR_002072 | 2026-08-07 09:25:21 | 0 | |||||||
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Swartz Center for Computational Neuroscience Resource Report Resource Website 10+ mentions |
Swartz Center for Computational Neuroscience (RRID:SCR_001933) | SCCN | data or information resource, portal, topical portal | Computational neuroscience center that observes and models how functional activities in multiple brain areas interact dynamically to support human cognition, creativity and social interaction. Center research involves development computational methods and software, experimental methods and equipment, collection and analysis of human cognitive experiments, and collaborations to analyze data collected by other groups in such experiments. The Center has a 72-channel EEG recording system customized for use in the fMRI environment, and a very-high density Biosemi Active Two active-electrode EEG system, rapidly configurable either as a 256-channel system for a single subject or as two 136-channel systems for recording from two subjects simultaneously. In addition, UCSD now has a 306-channel MEG plus 128-channel EEG system (Neuromag/Elektra). Projects in the Center include studies of human cognitive processes including attention and memory, role of the anterior/posterior cingulate, time perception and emotional expression. Data acquisition includes high-density EEG, concurrent EEG and fMRI recording and analysis, and face video processing. Current analysis approaches include independent component and time-frequency analysis. | emotional expression, fmri, anterior cingulate, attention, brain, cognition, computational neuroscience, concurrent eeg, high-density eeg, human, memory, posterior cingulate, social interaction, software, time perception, video procession, job, eeg, cognitive process, creativity, independent component analysis, time-frequency analysis |
has parent organization: University of California at San Diego; California; USA is parent organization of: Measure Projection Toolbox is parent organization of: NFT is parent organization of: Source Information Flow Toolbox is parent organization of: FMRLAB is parent organization of: BCILAB is parent organization of: EEGLAB |
Swartz Foundation | nif-0000-10509 | SCR_001933 | Swartz Center for Computational Neuroscience | 2026-08-07 09:25:19 | 34 | |||||||
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HistoWeb: Nervous System Resource Report Resource Website 1+ mentions |
HistoWeb: Nervous System (RRID:SCR_002369) | KU Nervous System, HistoWeb Nervous, KU Nervous | data or information resource, d spatial image, atlas, narrative resource, training material | Histology atlas of different parts of the nervous system that corresponds with the laboratory exercises of the Cell & Tissue Biology course of the School of Medicine of the University of Kansas. Succinct explanations of the tissues to guide the first-year medical student in the use of their microscope is provided and subsequently serves as a permanent histology resource for all medical students and physicians. Sections of the brain that are included are: * Spinal Cord * Central Canal * White Matter * Gray Matter * Dorsal Root Ganglion * Cerebellum * Cerebrum * Astrocytes * Nerve * Node of Ranvier * Pacinian Corpuscle | brain, anatomy, histology, microscopic, micrograph | has parent organization: University of Kansas; Kansas; USA | Use of the images in non-profit and educational applications is allowed. Please contact for other inquiries. | nif-0000-21194 | SCR_002369 | KU HistoWeb Nervous System, HistoWeb Nervous System, University of Kansas Nervous System | 2026-08-07 09:25:24 | 4 | |||||||
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Cell Centered Database Resource Report Resource Website 10+ mentions |
Cell Centered Database (RRID:SCR_002168) | CCDB | data or information resource, database, service resource, storage service resource, data repository, image repository | THIS RESOURCE IS NO LONGER IN SERVICE, documented June 5, 2017. It has been merged with Cell Image Library. Database for sharing and mining cellular and subcellular high resolution 2D, 3D and 4D data from light and electron microscopy, including correlated imaging that makes unique and valuable datasets available to the scientific community for visualization, reuse and reanalysis. Techniques range from wide field mosaics taken with multiphoton microscopy to 3D reconstructions of cellular ultrastructure using electron tomography. Contributions from the community are welcome. The CCDB was designed around the process of reconstruction from 2D micrographs, capturing key steps in the process from experiment to analysis. The CCDB refers to the set of images taken from microscope the as the Microscopy Product. The microscopy product refers to a set of related 2D images taken by light (epifluorescence, transmitted light, confocal or multiphoton) or electron microscopy (conventional or high voltage transmission electron microscopy). These image sets may comprise a tilt series, optical section series, through focus series, serial sections, mosaics, time series or a set of survey sections taken in a single microscopy session that are not related in any systematic way. A given set of data may be more than one product, for example, it is possible for a set of images to be both a mosaic and a tilt series. The Microscopy Product ID serves as the accession number for the CCDB. All microscopy products must belong to a project and be stored along with key specimen preparation details. Each project receives a unique Project ID that groups together related microscopy products. Many of the datasets come from published literature, but publication is not a prerequisite for inclusion in the CCDB. Any datasets that are of high quality and interest to the scientific community can be included in the CCDB. | electron microscope, light microscopy, electron tomography, electron microscopy, image, cell, microscopy, tomography |
is used by: NIF Data Federation is used by: Integrated Datasets is listed by: re3data.org is related to: Cell Image Library (CIL) is related to: Cell Image Library (CIL) is related to: Whole Brain Catalog is related to: Integrated Manually Extracted Annotation has parent organization: University of California at San Diego; California; USA has parent organization: University of California; San Diego;National Center for Microscopy and Imaging Research - NCMIR is parent organization of: Subcellular Anatomy Ontology is parent organization of: CCDB Image Converter is parent organization of: Jinx is parent organization of: WebImageBrowser is parent organization of: Image Workflow is parent organization of: Animal Imaging Database |
PMID:18054501 PMID:12160711 |
Free, Freely available | nif-0000-00007, r3d100000018 | SCR_002168 | CCDB, Cell-Centered Database | 2026-08-07 09:25:23 | 31 | ||||||
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Washington University School of Medicine Neuroscience Tutorial Resource Report Resource Website |
Washington University School of Medicine Neuroscience Tutorial (RRID:SCR_002271) | Neuroscience Tutorial | curriculum material, data or information resource, image collection, narrative resource, training material |
An illustrated guide to the essential basics of clinical neuroscience created in conjunction with the first-year course for medical students. Topics covered: * Coronal and horizontal sections * Basic visual pathway * Basic somatosensory pathway * Basic motor pathway * Eye and retina * Central visual pathways * Auditory and vestibular systems * Somatosensory pathways from the body * Somatosensory pathways from the face * Spinal motor structures * Brainstem nuclei of cranial nerves * Basal ganglia and cerebellum * Hypothalamus and autonomic nervous system * Medial temporal lobe and memory * Sleep and language * Where is...? |
clinical neuroscience, clinical, neuroscience, brain, neuroanatomy, coronal, horizontal, visual pathway, somatosensory pathway, motor pathway, eye, retina, auditory system, vestibular system, spinal motor, brainstem nuclei of cranial nerve, basal ganglia, cerebellum, hypothalamus, autonomic nervous system, medial temporal lobe, memory, sleep, language | has parent organization: Washington University School of Medicine in St. Louis; Missouri; USA | nif-0000-00113 | http://thalamus.wustl.edu/course | SCR_002271 | 2026-08-07 09:25:23 | 0 | ||||||||
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ClinicalTrials.gov Resource Report Resource Website 10000+ mentions |
ClinicalTrials.gov (RRID:SCR_002309) | ClinicalTrials.gov | data or information resource, catalog, database, service resource, clinical trial, storage service resource, data repository | Registry and results database of federally and privately supported clinical trials conducted in United States and around world. Provides information about purpose of trial, who may participate, locations, and phone numbers for more details. This information should be used in conjunction with advice from health care professionals.Offers information for locating federally and privately supported clinical trials for wide range of diseases and conditions. Research study in human volunteers to answer specific health questions. Interventional trials determine whether experimental treatments or new ways of using known therapies are safe and effective under controlled environments. Observational trials address health issues in large groups of people or populations in natural settings. ClinicalTrials.gov contains trials sponsored by National Institutes of Health, other federal agencies, and private industry. Studies listed in database are conducted in all 50 States and in 178 countries. | clinical trial, intervention, treatment, therapy, observation, drug, adverse event, result, outcome, data set, FASEB list |
is used by: NIF Data Federation is used by: Patients to Trials Consortium is used by: Corengi is used by: Biomarkers of Anti-TNF Treatment Efficacy in Rheumatoid Arthritis - Unresponsive Populations is used by: Limited Access Datasets From NIMH Clinical Trials is used by: Integrated Clinical Trials is used by: Integrated Datasets is used by: NIDDK Information Network (dkNET) is recommended by: National Library of Medicine is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases lists: Epidemiology of Diabetes Interventions and Complications lists: Behavior Enhances Drug Reduction of Incontinence lists: Diabetes Prevention Program lists: Diabetes Prevention Program Outcomes Study lists: Folic Acid for Vascular Outcome Reduction in Transplantation lists: Family Investigation of Nephropathy of Diabetes lists: Frequent Hemodialysis Network Daily Trial lists: HALT PKD lists: HEALTHY study lists: RiVuR lists: Study of Nutrition in Acute Pancreatitis lists: TINSAL-T2D lists: Treatment Options for type 2 Diabetes in Adolescents and Youth lists: TOMUS lists: TRIGR lists: CATIE - Alzheimers Disease lists: CATIE - Clinical Antipsychotic Trials in Intervention Effectiveness lists: Gastroparesis Clinical Research Consortium lists: Diabetes Control and Complications Trial lists: Efficacy and Mechanisms of Glutamine Dipeptide in the Surgical Intensive Care Unit lists: Evaluating Predictors and Interventions in Sphincter of Oddi Dysfunction lists: Frequent Hemodialysis Network Nocturnal Trial lists: Minimally Invasive Surgical Therapies Treatment Consortium for Benign Prostatic Hyperplasia lists: Focal Segmental Glomerulosclerosis in Children and Young Adults Interventional Study lists: Complementary and Alternative Medicine for Urological Symptoms lists: Program to Reduce Incontinence by Diet and Exercise lists: TEDDY lists: Diabetes Prevention Type 1 lists: HALT-C Trial lists: Viral Resistance to Antiviral Therapy of Chronic Hepatitis C lists: Medical Therapy of Prostatic Symptoms is listed by: OMICtools is related to: NIMH Clinical Trials is related to: cthist is related to: Clinical Trials Viewer has parent organization: National Library of Medicine is parent organization of: LinkedCT is parent organization of: Functional Dyspepsia Treatment Trial is parent organization of: High-dose Ursodiol Therapy of Primary Sclerosing Cholangitis is parent organization of: Peginterferon and Ribavirin for Pediatric Patients with Chronic Hepatitis C is parent organization of: Maryland Genetics of Interstitial Cystitis is parent organization of: Treatment of SSRI-resistant Depression in Adolescents (TORDIA) is parent organization of: Systematic Treatment Enhancement Program for Bipolar Disorder (STEP-BD) is parent organization of: TADS - Treatment for Adolescents with Depression Study is parent organization of: Biomarkers of Anti-TNF Treatment Efficacy in Rheumatoid Arthritis - Unresponsive Populations is parent organization of: Renin Angiotensin System Study |
NIH ; NLM |
PMID:27631620 | Free, Freely available | OMICS_01792, r3d100010211, nif-0000-21091 | https://doi.org/10.17616/R3H887 | SCR_002309 | Clinical Trials Database, ClinicalTrials.gov, Clinicaltrials.gov: A Service Of The National Institutes Of Health, ClinicalTrials, Clinical Trials gov | 2026-08-07 09:25:24 | 54250 | ||||
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PROVEAN Resource Report Resource Website 1000+ mentions |
PROVEAN (RRID:SCR_002182) | PROVEAN | production service resource, software resource, data analysis service, analysis service resource, service resource | A software tool which predicts whether an amino acid substitution or indel has an impact on the biological function of a protein. | amino acid substitution, indel, function, protein, amino acid, substitution, protein variant, genome variant, next-generation sequencing, insertion, deletion |
is listed by: OMICtools has parent organization: J. Craig Venter Institute |
NIH ; NHGRI 5R01HG004701-04 |
PMID:23056405 | Free, Available for download, Freely available | OMICS_01849 | SCR_002182 | Protein Variation Effect Analyzer | 2026-08-07 09:25:24 | 2380 | |||||
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dbSNP Resource Report Resource Website 5000+ mentions |
dbSNP (RRID:SCR_002338) | dbSNP | data or information resource, database, service resource, storage service resource, data repository | Database as central repository for both single base nucleotide substitutions and short deletion and insertion polymorphisms. Distinguishes report of how to assay SNP from use of that SNP with individuals and populations. This separation simplifies some issues of data representation. However, these initial reports describing how to assay SNP will often be accompanied by SNP experiments measuring allele occurrence in individuals and populations. Community can contribute to this resource. | insertion, polymorphism, short, deletion, single, nucleotide, genetic, variation, genomics, genotype, disease, allele, microsatellite, marker, multinucleotide, heterozygous, sequence, gold standard, bio.tools |
is used by: ExAc is used by: GEMINI is recommended by: National Library of Medicine is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: OMICtools is listed by: re3data.org is listed by: bio.tools is listed by: Debian is related to: Ensembl Variation is related to: GWAS Central is related to: TopoSNP is related to: GWAS Central has parent organization: NCBI has parent organization: National Human Genome Research Institute works with: Open Regulatory Annotation Database |
NLM | PMID:21154707 | Free, Freely available | nif-0000-02734, biotools:dbsnp, OMICS_00264, r3d100010652 | http://www.ncbi.nlm.nih.gov/projects/SNP/, https://bio.tools/dbsnp, https://doi.org/10.17616/R3XG81 | SCR_002338 | dbSNP: Database for Short Genetic Variations, Entrez SNP - Single Nucleotide Polymorphism, SNV Database, NCBI SNV Database, NCBI Short Genetic Variations Database, NCBI Short Genetic Variations, NCBI Single Nucleotide Polymorphism, Entrez SNP, dbSNP, NCBI Short Genetic Variations (SNV) database | 2026-08-07 09:25:24 | 9088 | ||||
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VAAST Resource Report Resource Website 10+ mentions |
VAAST (RRID:SCR_002179) | VAAST, VAAST 2 | sequence analysis software, software resource, software application, data analysis software, standalone software, data processing software | A probabilistic search tool for identifying damaged genes and their disease-causing variants in personal genome sequences. VAAST combines elements of phylogenetic conservation, amino acid substitution, and aggregative approaches to variant prioritization into a single unified likelihood-framework that allows users to accurately identify damaged genes and deleterious variants. The software can score both coding (SNV, indel and splice site) and non-coding variants (SNV), evaluating the cumulative impact of both types of variants simultaneously. It can identify rare variants causing rare genetic diseases and can also use both rare and common variants to identify genes responsible for common diseases. | sequence analysis software, genetic, variant classifier, amino acid substitution, disease, genome interpretation, variant prioritization, disease gene prioritization, genomic variation, bio.tools |
is listed by: OMICtools is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian is related to: Opal Research has parent organization: Yandell Lab Portal |
PMID:23836555 PMID:21700766 |
Free, Freely available | nlx_154686, SciRes_000138, biotools:vaast, OMICS_02134 | https://bio.tools/vaast | SCR_002179 | Variant Annotation Analysis and Search Tool, Variant Annotation Analysis & Search Tool | 2026-08-07 09:25:22 | 32 | |||||
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Autosomal Recessive Polycystic Kidney Disease Mutation Database Resource Report Resource Website 10+ mentions |
Autosomal Recessive Polycystic Kidney Disease Mutation Database (RRID:SCR_002290) | data or information resource, database, service resource, storage service resource, data repository | Catalog of all changes detected in PKHD1 (Polycystic Kidney and Hepatic Disease 1) in a locus specific database. Investigators are invited to submit their novel data to this database. These data should be meaningful for clinical practice as well as of relevance for the reader interested in molecular aspects of polycystic kidney disease (PKD). There are also some links and information for ARPKD patients and their parents. Autosomal recessive polycystic kidney disease (ARPKD/PKHD1) is an important cause of renal-related and liver-related morbidity and mortality in childhood. This study reports mutation screening in 90 ARPKD patients and identifies mutations in 110 alleles making up a detection rate of 61%. Thirty-four of the detected mutations have not been reported previously. Two underlying mutations in 40 patients and one mutation in 30 cases are disclosed, and no mutation was detected on the remaining chromosomes. Mutations were found to be scattered throughout the gene without evidence of clustering at specific sites. PKHD1 mutation analysis is a powerful tool to establish the molecular cause of ARPKD in a given family. Direct identification of mutations allows an unequivocal diagnosis and accurate genetic counseling even in families displaying diagnostic challenges. | clinical, gene, genetic, mutation, protein, recessive, renal | has parent organization: RWTH Aachen University; Aachen; Germany | Autosomal recessive polycystic kidney disease, Polycystic kidney disease | PMID:16199545 PMID:11919560 |
Permission required, Terms of use | nif-0000-21038 | http://www.humgen.rwth-aachen.de/index.asp?subform=database.html&nav=database_nav.html | SCR_002290 | Mutation Database Autosomal Recessive Polycystic Kidney Disease (ARPKD/PKHD1) | 2026-08-07 09:25:23 | 14 | |||||
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CistromeMap Resource Report Resource Website |
CistromeMap (RRID:SCR_002173) | CistromeMap | data or information resource, database, service resource, storage service resource, data repository | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 23,2022. A knowledgebase of all of the publicly available ChIP-Seq and DNase-Seq data in mouse and human. They have also manually curated metadata to ensure annotation consistency, and developed a user-friendly display matrix for quick navigation and retrieval of data for specific factors, cells, and papers. The community can contribute to this resource. | chip-seq, dnase-seq, cell, factor |
is listed by: OMICtools is related to: CistromeFinder has parent organization: Dana-Farber Cancer Institute |
PMID:22495751 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_01853 | SCR_002173 | 2026-08-07 09:25:22 | 0 | |||||||
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Current Controlled Trials Resource Report Resource Website 1000+ mentions |
Current Controlled Trials (RRID:SCR_002325) | CCT | data or information resource, database, service resource, storage service resource, data repository | Free-to-view clinical trials register of clinical trials worldwide, it allows users to search, register and share information about randomized controlled trials. Publication services are also available via the range of open access peer-reviewed journals published by BioMed Central. Current Controlled Trials is run by an editorial and technical in-house team. It receives advice from an international Advisory Group, including academics, doctors and health care specialists of international renown. The Advisory Group provides valuable guidance on the current activities and possible new directions of Current Controlled Trials' two databases, the metaRegister of Controlled Trials (mRCT) and the International Standard Randomised Controlled Trial Number (ISRCTN) scheme. | controlled trial, health, public health, science, trial, randomized controlled trial, clinical trial, FASEB list |
uses: ISRCTN Registry is related to: ISRCTN Registry is parent organization of: ISRCTN Registry |
Science Navigation Group ; European Union ; administrative fee |
Free and open access | nif-0000-21104 | http://www.webcitation.org/getfile?fileid=6fc2d850dde348335d1ab0b66828190d475a6967 | SCR_002325 | Current Controlled Trials Ltd | 2026-08-07 09:25:25 | 1471 | |||||
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Genevestigator Resource Report Resource Website 100+ mentions |
Genevestigator (RRID:SCR_002358) | Genevestigator | data or information resource, production service resource, commercial organization, data analysis service, database, analysis service resource, service resource | A high performance search engine for gene expression that integrates thousands of manually curated public microarray and RNAseq experiments and nicely visualizes gene expression across different biological contexts (diseases, drugs, tissues, cancers, genotypes, etc.). There are two basic analysis approaches: # for a gene of interest, identify which conditions affect its expression. # for condition(s) of interest, identify which genes are specifically expressed in this/these conditions. Genevestigator builds on the deep integration of data, both at the level of data normalization and on the level of sample annotations. This deep integration allows scientists to ask new types of questions that cannot be addressed using conventional tools. | gene, genetic, animal, development, disease, meta-analysis, regulation, stage, microarray, rnaseq, visualization, gene expression, disease, drug, tissue, cancer, genotype, pharma, biomedical, conditions, genotype, anatomy, neoplasm, chemical, hormone, infection, model organism, organ, cell type, cell line, target, biomarker, similarity, FASEB list | is parent organization of: RefGenes | 4 products:, Free, Free for academic use, Account required, Paid subscription, Local installation | nif-0000-21172, OMICS_00763 | SCR_002358 | 2026-08-07 09:25:25 | 407 | ||||||||
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Cognitive Paradigm Ontology Resource Report Resource Website 1+ mentions |
Cognitive Paradigm Ontology (RRID:SCR_002235) | CogPO | ontology, data or information resource, controlled vocabulary | Ontology used to describe the experimental conditions within cognitive and behavioral experiments, primarily in humans for application and use in the functional neuroimaging community. CogPO has been developed through the integration of the Functional Imaging Biomedical Informatics Research Network (FBIRN) Human Imaging Database (HID) and the BrainMap Database. The design of CogPO concentrates on what can be observed directly: categorization of each paradigm in terms of (1) the stimulus presented to the subjects, (2) the requested instructions, and (3) the returned response. | functional neuroimaging, owl, cognition, behavior |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: BioPortal is related to: Human Imaging Database has parent organization: University of Texas Health Science Center at San Antonio; Texas; USA has parent organization: Mind Research Network |
NIMH 1R01MH084812-01A1 | Free, Freely available | nlx_155537 | http://www.nitrc.org/projects/cogpo | SCR_002235 | 2026-08-07 09:25:23 | 9 | ||||||
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ROBEX Resource Report Resource Website 1+ mentions |
ROBEX (RRID:SCR_002534) | ROBEX | image processing software, segmentation software, image analysis software, software resource, software application, data processing software | An automatic whole-brain extraction tool for T1-weighted MRI data (commonly known as skull stripping). Whole-brain segmentation is often the first component in neuroimage pipelines and therefore, its robustness is critical for the overall performance of the system. Many methods have been proposed in the literature, but they often: * work well on certain datasets but fail on others. * require case-specific parameter tuning ROBEX aims for robust skull-stripping across datasets with no parameter settings. It fits a triangular mesh, constrained by a shape model, to the probabilistic output of a supervised brain boundary classifier. Because the shape model cannot perfectly accommodate unseen cases, a small free deformation is subsequently allowed. The deformation is optimized using graph cuts. | magnetic resonance, mri, skull stripping, classification, segmentation, brain, skull | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | PMID:21880566 | Free, Available for download, Freely available | nlx_155939 | http://www.nitrc.org/projects/robex | SCR_002534 | Robust Brain Extraction (ROBEX), Robust Brain Extraction | 2026-08-07 09:25:27 | 3 |
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