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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hymenoptera Anatomy Ontology Resource Report Resource Website 1+ mentions |
Hymenoptera Anatomy Ontology (RRID:SCR_003340) | HAO | data or information resource, controlled vocabulary, ontology | A structured controlled vocabulary of the anatomy of the Hymenoptera (bees, wasps, sawflies and ants) | owl, anatomy, organismal |
is listed by: BioPortal is listed by: OBO |
NSF DBI 0850223 | Creative Commons Attribution-NonCommercial-ShareAlike License, v3 unported, (Content) | nlx_157435 | http://purl.bioontology.org/ontology/HAO http://purl.obolibrary.org/obo/hao.owl |
SCR_003340 | 2025-05-15 10:37:04 | 2 | ||||||
|
NIF Cell Ontology Resource Report Resource Website |
NIF Cell Ontology (RRID:SCR_003977) | NIFCELL | data or information resource, controlled vocabulary, ontology | Ontology for cell types from NIFSTD | owl |
is listed by: BioPortal has parent organization: NIFSTD |
nlx_157492 | SCR_003977 | Neuroscience Information Framework (NIF) Cell Ontology, Neuroscience Information Framework Cell Ontology | 2025-05-15 10:37:16 | 0 | ||||||||
|
Mass Spectrometry Ontology Resource Report Resource Website |
Mass Spectrometry Ontology (RRID:SCR_003579) | MS | data or information resource, controlled vocabulary, ontology | A structured controlled vocabulary for the annotation of mass spectrometry experiments. | obo |
is listed by: BioPortal has parent organization: HUPO Proteomics Standards Initiative |
nlx_157465 | SCR_003579 | 2025-05-15 10:37:08 | 0 | |||||||||
|
Ontology for Parasite LifeCycle Resource Report Resource Website |
Ontology for Parasite LifeCycle (RRID:SCR_003427) | OPL | data or information resource, controlled vocabulary, ontology | A reference ontology that models the life cycle stage details of various parasites, including Trypanosoma sp., Leishmania major, and Plasmodium sp., etc. In addition to life cycle stages, the ontology also models necessary contextual details, such as host information, vector information, and anatomical location. OPL is based on the Basic Formal Ontology (BFO) and follows the rules set by the OBO Foundry consortium. | owl, parasite, life cycle, host, vector, anatomical location |
is listed by: BioPortal is listed by: OBO is listed by: Google Code is related to: Information Artifact Ontology |
nlx_157521 | http://purl.bioontology.org/ontology/OPL http://purl.obolibrary.org/obo/opl.owl |
SCR_003427 | 2025-05-15 10:37:05 | 0 | ||||||||
|
Ontology for Genetic Interval Resource Report Resource Website |
Ontology for Genetic Interval (RRID:SCR_003423) | OGI | data or information resource, controlled vocabulary, ontology | An ontology that formalized the genomic element by defining an upper class genetic interval using BFO as its framework. The definition of genetic interval is the spatial continuous physical entity which contains ordered genomic sets (DNA, RNA, Allele, Marker,etc.) between and including two points (Nucleic_Acid_Base_Residue) on a chromosome or RNA molecule which must have a liner primary sequence structure. | owl, genomic, genetic, dna, rna, allele, marker, chromosome, rna molecule |
is listed by: BioPortal is listed by: OBO is listed by: Google Code is related to: Information Artifact Ontology |
nlx_157517 | http://purl.bioontology.org/ontology/OGI http://purl.obolibrary.org/obo/ogi.owl |
SCR_003423 | 2025-05-15 10:37:05 | 0 | ||||||||
|
Ontology of Physical Exercises Resource Report Resource Website |
Ontology of Physical Exercises (RRID:SCR_003836) | OPE | data or information resource, controlled vocabulary, ontology | Ontology that provides a reference for describing an exercise in terms of functional movements, engaged musculoskeletal system parts, related equipment or monitoring devices, intended health outcomes, as well as target ailments for which the exercise might be employed as a treatment or preventative measure. | owl | is listed by: BioPortal | nlx_157535 | SCR_003836 | 2025-05-15 10:37:14 | 0 | |||||||||
|
Human Disease Ontology Resource Report Resource Website 1+ mentions |
Human Disease Ontology (RRID:SCR_000476) | DO | database, data or information resource, controlled vocabulary, ontology | Comprehensive hierarchical controlled vocabulary for human disease representation.Open source ontology for integration of biomedical data associated with human disease. Disease Ontology database represents comprehensive knowledge base of inherited, developmental and acquired human diseases. | obo, pathological, organismal, cellular, disease, biomedical, health, neurologic disease, neurological disorder, phenotype, bio.tools, |
is used by: DOAF is listed by: BioPortal is listed by: OBO is listed by: bio.tools is listed by: Debian is related to: PharmGKB Ontology is related to: GWASdb is related to: NUgene Project is related to: FunDO is related to: Neurocarta has parent organization: University of Maryland School of Medicine; Maryland; USA |
NHGRI U24 HG012557 | PMID:22080554 | Free, Freely available | nif-0000-35926, nlx_157432, SCR_003491, biotools:disease_ontology | http://disease-ontology.org/ https://bio.tools/disease_ontology http://purl.obolibrary.org/obo/doid.obo |
http://do-wiki.nubic.northwestern.edu/index.php/Main_Page | SCR_000476 | Human Disease Ontology Knowledgebase, Disease Ontology | 2025-05-16 10:54:32 | 5 | |||
|
Gazetteer Resource Report Resource Website 1+ mentions |
Gazetteer (RRID:SCR_000473) | GAZ | portal, topical portal, data or information resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented on April 23, 2014. Description not available. | obo, owl |
is listed by: BioPortal is listed by: OBO has parent organization: Genomic Standards Consortium |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_157412 | http://purl.obolibrary.org/obo/gaz.owl http://build.berkeleybop.org/job/build-gaz/lastSuccessfulBuild/artifact/gaz.obo |
http://gensc.org/gc_wiki/index.php/GAZ_Project | SCR_000473 | 2025-05-16 10:54:32 | 1 | ||||||
|
Fly Taxonomy Resource Report Resource Website |
Fly Taxonomy (RRID:SCR_003317) | FB-SP, FBsp | data or information resource, controlled vocabulary | The taxonomy of the family Drosophilidae (largely after Baechli) and of other taxa referred to in FlyBase. | obo, taxonomy, organismal |
is listed by: BioPortal is listed by: OBO is listed by: SourceForge has parent organization: FlyBase |
Public | nlx_157407 | http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/taxonomy/fly_taxonomy.obo | SCR_003317 | FlyBase Taxa | 2025-05-13 11:12:44 | 0 | ||||||
|
MeSH Resource Report Resource Website 10000+ mentions |
MeSH (RRID:SCR_004750) | MeSH | data or information resource, controlled vocabulary | A controlled vocabulary thesaurus that consists of sets of terms naming descriptors in a hierarchical structure that permits searching at various levels of specificity. MeSH, in machine-readable form, is provided at no charge via electronic means. MeSH descriptors are arranged in both an alphabetic and a hierarchical structure. At the most general level of the hierarchical structure are very broad headings such as Anatomy or Mental Disorders. More specific headings are found at more narrow levels of the twelve-level hierarchy, such as Ankle and Conduct Disorder. There are 27,149 descriptors in 2014 MeSH. There are also over 218,000 entry terms that assist in finding the most appropriate MeSH Heading, for example, Vitamin C is an entry term to Ascorbic Acid. In addition to these headings, there are more than 219,000 headings called Supplementary Concept Records (formerly Supplementary Chemical Records) within a separate thesaurus. The MeSH thesaurus is used by NLM for indexing articles from 5,400 of the world''''s leading biomedical journals for the MEDLINE/PubMED database. It is also used for the NLM-produced database that includes cataloging of books, documents, and audiovisuals acquired by the Library. Each bibliographic reference is associated with a set of MeSH terms that describe the content of the item. Similarly, search queries use MeSH vocabulary to find items on a desired topic. | umls, database, health, thesaurus, medical, gold standard |
is used by: Nowomics is used by: Cytokine Registry is listed by: BioPortal is related to: MEDLINE is related to: Public Health Image Library is related to: MEDLINE is related to: DermAtlas. is related to: Coremine Medical is related to: Unified Medical Language System is related to: I3-CRB: Interoperable IT Infrastructure for Biological Resources Centres / Biobanks - France is related to: Robert Hoehndorf Version of MeSH is related to: PharmGKB Ontology is related to: Linked Neuron Data is related to: PubMed has parent organization: National Library of Medicine |
Free | nlx_75424 | http://purl.bioontology.org/ontology/MESH | SCR_004750 | MeSH (Medical Subject Headings), Medical Subject Headings | 2025-05-13 11:13:19 | 26361 | ||||||
|
WHO Adverse Reaction Terminology Resource Report Resource Website |
WHO Adverse Reaction Terminology (RRID:SCR_010447) | WHO-ART | data or information resource, controlled vocabulary | Ontology of the WHO adverse reaction terminology, 1997. | umls |
is listed by: BioPortal has parent organization: World Health Organization |
nlx_157628 | SCR_010447 | World Health Organization (WHO) Adverse Reaction Terminology, World Health Organization Adverse Reaction Terminology | 2025-05-13 11:15:36 | 0 | ||||||||
|
Teleost Taxonomy Ontology Resource Report Resource Website |
Teleost Taxonomy Ontology (RRID:SCR_001611) | TTO | data or information resource, controlled vocabulary, ontology | An ontology of taxonomic terms (names of taxonomic groups) used in the systematics of fish, including non-teleost groups such as Chondrichthys (sharks and rays), Sarcopterygii (lungfish and coelacanths), lampreys, and hagfish. It contains (as of August 2010) over 38,500 names, and over 44,000 taxonomic synonyms. A majority of the taxonomic names and synonyms were made available from the Catalog of Fishes. In July 2010 they added nearly 15,000 common names provided by Fishbase. Additional names and synonyms are added as a result of their curation activities. The ontology is being used to facilitate annotation of phenotypes, particularly for taxa that are not covered by NCBI because no submissions of molecular data have been made. Taxonomy ontologies can also be valuable in annotating legacy data, where authors make phenotype or ecological assertions (e.g., host-parasite associations) that refer to groups that are reorganized or no longer recognized. The taxonomy ontology serves as the source of taxa for their project's use for identifying evolutionary changes that match the phenotype of a zebrafish mutant. | taxonomy, term, name, group, fish, phenotype, obo |
is used by: Vertebrate Taxonomy Ontology is listed by: BioPortal is related to: Catalog of Fishes is related to: FishBase has parent organization: Phenoscape Knowledgebase |
Creative Commons Zero License | nlx_153877 | https://www.nescent.org/phenoscape/ | SCR_001611 | 2025-05-15 10:36:17 | 0 | |||||||
|
Vaccine Ontology Resource Report Resource Website 1+ mentions |
Vaccine Ontology (RRID:SCR_006271) | VO | data or information resource, controlled vocabulary, ontology | A biomedical ontology in the vaccine domain | owl |
is used by: Ontology of Vaccine Adverse Events is listed by: BioPortal |
PMID:21871085 | nlx_157621 | SCR_006271 | 2025-05-15 10:38:21 | 1 | ||||||||
|
Breast Cancer Grading Ontology Resource Report Resource Website |
Breast Cancer Grading Ontology (RRID:SCR_006658) | BCGO | data or information resource, controlled vocabulary, ontology | Ontology that assigns a grade to a tumor starting from the 3 criteria of the NGS | owl | is listed by: BioPortal | Breast Cancer | nlx_157343 | SCR_006658 | 2025-05-15 10:38:36 | 0 | ||||||||
|
Adult Mouse Anatomy Ontology Resource Report Resource Website 1+ mentions |
Adult Mouse Anatomy Ontology (RRID:SCR_006568) | MA | data or information resource, controlled vocabulary, ontology |
Ontology that organizes anatomical structures for the adult mouse (Theiler stage 28) spatially and functionally, using ''is a'' and ''part of'' relationships. The ontology is used to describe expression data for the adult mouse and phenotype data pertinent to anatomy in standardized ways. The browser can be used to view anatomical terms and their relationships in a hierarchical display. |
functionally, adult mouse, anatomical, anatomy, phenotype, postnatal, structure, theiler stage 28, obo, gene expression |
is listed by: BioPortal is related to: Bgee: dataBase for Gene Expression Evolution has parent organization: Gene Expression Database |
NIH ; NICHD HD33745; NICHD F32 HD08435-01; NHGRI F32 HG00215-01 |
Acknowledgement requested | nif-0000-10300 | http://purl.bioontology.org/ontology/MA | SCR_006568 | Adult Mouse Anatomy Browser, MGI Adult Mouse Anatomical Dictionary Browser, Adult Mouse Anatomical Dictionary Browser, Mouse Adult Gross Anatomy Ontology, Anatomical Dictionary for the Adult Mouse | 2025-05-15 10:38:32 | 2 | |||||
|
Sleep Domain Ontology Resource Report Resource Website |
Sleep Domain Ontology (RRID:SCR_006808) | SDO | data or information resource, controlled vocabulary, ontology | An application ontology for the domain of Sleep Medicine. | owl | is listed by: BioPortal | nlx_157590 | SCR_006808 | 2025-05-15 10:38:42 | 0 | |||||||||
|
Cell Behavior Ontology Resource Report Resource Website 1+ mentions |
Cell Behavior Ontology (RRID:SCR_007055) | CBO | data or information resource, controlled vocabulary, ontology | Ontology that describes multi-cell computational models. In particular to describe both the existential behaviors of cells (spatiality, growth, movement, adhesion, death, ...) and computational models of those behaviors. | owl | is listed by: BioPortal | nlx_157353 | http://cbo.biocomplexity.indiana.edu/cbo/ | SCR_007055 | 2025-05-15 10:38:46 | 1 | ||||||||
|
Cerebrotendinous Xanthomatosis Ontology Resource Report Resource Website |
Cerebrotendinous Xanthomatosis Ontology (RRID:SCR_007067) | CTX | data or information resource, controlled vocabulary, ontology | Ontology that represents CTX phenotypes, genetic variants, and bidirectional relationships between them though a patient model. The CTX ontology was built reusing the Human Phenotype Ontology (HPO) and the Snomed ct ontologies. A set of temporal clinical manifestations are semantically annotated with a domain phenotype ontology and registered with a time-stamped value. | owl | is listed by: BioPortal | nlx_157360 | SCR_007067 | 2025-05-15 10:38:46 | 0 | |||||||||
|
Cancer Chemoprevention Ontology Resource Report Resource Website |
Cancer Chemoprevention Ontology (RRID:SCR_006966) | CANCO | data or information resource, controlled vocabulary, ontology | A vocabulary that is able to describe and semantically interconnect the different paradigms of the cancer chemoprevention domain. | owl | is listed by: BioPortal | Cancer | nlx_157350 | SCR_006966 | 2025-05-15 10:38:44 | 0 | ||||||||
|
Neural-Immune Gene Ontology Resource Report Resource Website |
Neural-Immune Gene Ontology (RRID:SCR_004120) | NIGO | data or information resource, controlled vocabulary, ontology | Ontology that is a subset of GO directed for neurological and immunological systems. It was created by clipping those GO terms that are not associated to any gene in human, rat and mouse, and by clipping terms not found to be relevant to the neural and/or immune domains. | obo |
is listed by: BioPortal is related to: Gene Ontology |
nlx_157506 | SCR_004120 | 2025-05-15 10:37:19 | 0 |
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