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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Bruker: 7 Tesla Bruker BioSpec 70/20 USR MRI system Resource Report Resource Website 1+ mentions |
Bruker: 7 Tesla Bruker BioSpec 70/20 USR MRI system (RRID:SCR_022895) | instrument resource | Multipurpose research system for high resolution Magnetic Resonance Spectroscopy and Imaging. System is equipped with 7 Tesla superconducting magnet designed with Ultra Shielded Refrigerated magnet technology. USR technology significantly reduces stray field to close to magnet. Used for In Vivo Magnetic Resonance Imaging. | Instrument, Equipment, USEDit, Bruker, BioSpec, Magnetic Resonance Spectroscopy and Imaging, neuroimagingmedical imaging | Restricted | Model_Number_BioSpec_70/20 | SCR_022895 | 7.0 Tesla Bruker BioSpec 70/20 USR, Bruker BioSpec 70/20 | 2026-08-01 12:08:06 | 9 | |||||||||
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QuickNII and VisuAlign Resource Report Resource Website |
QuickNII and VisuAlign (RRID:SCR_022818) | software resource | EBRAINS service for image registration. Spatially register mouse and rat serial 2D brain images to 3D reference atlases. | Spatially register mouse and rat serial 2D brain images, 3D reference atlases, image registration, EBRAINS |
is used by: BICCN is listed by: EBRAINS |
Free, Freely available | SCR_022818 | 2026-08-01 12:08:04 | 0 | ||||||||||
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Science Alliance Resource Report Resource Website |
Science Alliance (RRID:SCR_023040) | nonprofit organization | Organization mission is to expand cooperative ventures in research with Oak Ridge National Laboratory and enhance science and engineering research programs at University of Tennessee. Organization is affiliated with Tennessee Center of Excellence. Funding resource. | Oak Ridge National Laboratory, science and engineering research programs, University of Tennessee, Tennessee Center of Excellence | https://utorii.com/research/science-alliance/ | SCR_023040 | 2026-08-01 12:07:48 | 0 | |||||||||||
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Society of Urodynamics, Female Pelvic Medicine and Urogenital Reconstruction (SUFU) Resource Report Resource Website |
Society of Urodynamics, Female Pelvic Medicine and Urogenital Reconstruction (SUFU) (RRID:SCR_022874) | nonprofit organization | Organization to optimize the care of women, men, and children with lower urinary tract dysfunction and/or pelvic floor disorders through education, research and involvement in health care policy. To improve the art and science of Urology through basic and applied clinical research in urodynamics and neurourology, voiding function and dysfunction, female urology and pelvic floor dysfunction, and to disseminate and teach these concepts. | lower urinary tract dysfunction, pelvic floor disorders, urodynamics and neurourology, female urology | is listed by: Collaborating for the Advancement of Interdisciplinary Research in Benign Urology | SCR_022874 | 2026-08-01 12:08:05 | 0 | |||||||||||
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Ultracut: E ultramicrotome Resource Report Resource Website 1+ mentions |
Ultracut: E ultramicrotome (RRID:SCR_022980) | instrument resource | Reichert Jung Ultracut E, article number 131-960, is used to cut ultrathin and semithin sections of resin embedded samples for electron microscopy. | USEDit, Instrument, Equipment, ultramicrotome, cut ultrathin and semithin sections, resin embedded samples, electron microscopy | is listed by: USEDit | SCR_022980 | 2026-08-01 12:08:07 | 1 | |||||||||||
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Bertin Technologies: Precellys 24 tissue homogenizer Resource Report Resource Website 1+ mentions |
Bertin Technologies: Precellys 24 tissue homogenizer (RRID:SCR_022979) | instrument resource | The Precellys 24 homogenizer with automatic tube locking system with the ability to process up to 24 tubes simultaneously., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | USEDit, Instrument, Equipment, Bertin Technologies, homogenizer, automatic tube locking system, | is listed by: USEDit | THIS RESOURCE IS NO LONGER IN SERVICE | Model_Number_Precellys_24 | SCR_022979 | Bertin Precellys 24 tissue homogenizer | 2026-08-01 12:08:03 | 3 | ||||||||
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iNSCOPIX: nVoke System Resource Report Resource Website 1+ mentions |
iNSCOPIX: nVoke System (RRID:SCR_023028) | instrument resource | Miniature microscope system that integrates in vivo cellular resolution calcium imaging with simultaneous or sequential optogenetic manipulation to causally link neural circuit activity with behavior. | Instrument, Equipment, USEDit, Inscopix, miniature microscope, in vivo cellular resolution, calcium imaging, optogenetic manipulation, link neural circuit activity with behavior, | is listed by: USEDit | Restricted | SCR_023028 | Inscopix nVoke System | 2026-08-01 12:08:03 | 2 | |||||||||
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GLAD Resource Report Resource Website 100+ mentions |
GLAD (RRID:SCR_001284) | GLAD | software resource | Software for analysis of array CGH data: detection of breakpoints in genomic profiles and assignment of a status (gain, normal or loss) to each chromosomal regions identified. | comparative genomic hybridization, breakpoint, copy number variation, microarray |
is listed by: OMICtools has parent organization: Bioconductor |
PMID:15381628 | Free, Available for download, Freely available | OMICS_02053 | SCR_001284 | GLAD - Gain and Loss Analysis of DNA, Gain and Loss Analysis of DNA | 2026-08-01 12:08:11 | 283 | ||||||
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Bycom Resource Report Resource Website |
Bycom (RRID:SCR_000659) | software resource | A software which can perform methylcytosine calling from BS-seq (WGBS and RRBS), and permits either unmapped reads (FASTQ) or mapped reads (SAM/BAM) to be used as the input data. Certain SNPs (C>A/G) can also be selected in the output. | methylcytosine, bs-seq, fastq, sam, bam, snps, snp, wgbs, rrbs, sorftw |
is listed by: OMICtools has parent organization: SourceForge |
PMID:25255082 | Free, Available for download, Freely available | OMICS_00594 | SCR_000659 | 2026-08-01 12:08:11 | 0 | ||||||||
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OncoMerge Resource Report Resource Website 1+ mentions |
OncoMerge (RRID:SCR_023079) | software resource | Software tool to integrate somatic mutation types into comprehensive integrated somatic mutation matrix for downstream analyses.Somatic mutation integration platform that tames allelic heterogeneity, discovers causal mutations, integrates binary PAM and fusion with quantitative CNA data types, and overcomes known obstacles in cancer genetics. Used for systematic integration of protein affecting mutations, gene fusions, and copy number alterations into comprehensive somatic mutational profile. | integrate somatic mutation types, comprehensive integrated somatic mutation matrix, downstream analyses, protein affecting mutations, gene fusions, copy number alterations, systematic integration, comprehensive somatic mutational profile, | DOI:10.1101/2022.07.22.501139 | Free, Available for download, Freely available | SCR_023079 | 2026-08-01 12:08:10 | 1 | ||||||||||
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MS-DIAL Resource Report Resource Website 50+ mentions |
MS-DIAL (RRID:SCR_023076) | software resource | Software tool for data independent MS/MS deconvolution for comprehensive metabolome analysis. Universal program for untargeted metabolomics that supports multiple instruments (GC/MS, GC/MS/MS, LC/MS, and LC/MS/MS) and MS vendors (Agilent, Bruker, LECO, Sciex, Shimadzu, Thermo, and Waters). Used for untargeted metabolomics and lipidomics supporting any type of chromatography/mass spectrometry methods. | Data independent MS/MS deconvolution, metabolome analysis, untargeted metabolomics universal program, supports multiple instruments and MS vendors, untargeted metabolomics and lipidomics, chromatography, mass spectrometry | PMID:25938372 | Free, Available for download, Freely available | biotools:ms_dial | https://bio.tools/ms_dial, https://github.com/mtbinfo-team/mtbinfo.github.io, https://mtbinfo-team.github.io/mtbinfo.github.io/ | SCR_023076 | 2026-08-01 12:07:48 | 80 | ||||||||
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YXLON: FF65 CL 3D X-Ray Resource Report Resource Website |
YXLON: FF65 CL 3D X-Ray (RRID:SCR_020910) | instrument resource | X ray inspection system for automatic analysis of smallest and most demanding features within 3D IC, MEMS and sensors. | YXLON, 3D X-Ray, Instrument Equipment, USEDit, | Commercially available | Model_Number_FF65 | SCR_020910 | 2026-08-01 12:07:09 | 0 | ||||||||||
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Wallac: 1450 Liquid Scintillation Counter Resource Report Resource Website |
Wallac: 1450 Liquid Scintillation Counter (RRID:SCR_020878) | instrument resource | Wallac 1450 MicroBeta is a liquid scintillation counter and luminescence detector that can accommodate either 1, 2, 3, 6, or 12 detectors, each of which can count in 96- and 24- or 96- and 384-well plate formats. Samples may be counted in microplates, tubes, or on filters for added flexibility. The counter features dual photomultiplier tubes (PMT), with the first PMT set over the sample and the second located below. This method of coincidence counting provides optimal productivity for any compatible assay, including proximity and filtration assays among others. | Wallac, Liquid Scintillation Counter, Instrument Equipment, USEDit | Commercially available | Model_Number_1450 | SCR_020878 | 2026-08-01 12:07:01 | 0 | ||||||||||
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Rigaku: X-Stream 2000 Cryo-freezing System Resource Report Resource Website |
Rigaku: X-Stream 2000 Cryo-freezing System (RRID:SCR_020911) | instrument resource | Cryogenic Crystal Cooler is a self-contained apparatus designed for cooling crystals to a temperature within the range of -180C to 4C. The X-stream 2000 system takes room air, compresses it, and removes the impurities from it to produce clean, dry nitrogen. This gas is then cooled to nearly -196C, and then rewarmed to the desired temperature | X-Stream, Cryo-freezing System, Instrument Equipment, USEDit | Commercially available | Model_Number_X-Strea 2000 | SCR_020911 | 2026-08-01 12:07:02 | 0 | ||||||||||
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Waters: 1525 Binary HPLC Pump Resource Report Resource Website |
Waters: 1525 Binary HPLC Pump (RRID:SCR_020875) | instrument resource | Itegrated, high-pressure, binary HPLC pump that feature on-board pulse dampening and efficient mixing. Their pulse-free solvent flow, from analytical to semi-preparative flow rates, makes them best for use with highly sensitive detectors. Designed for use with 2 to 4.6 mm I.D. columns in routine LC and LC/MS applications, these pumps have a programmable flow-rate range of 0.00 to 10.00 mL/min in 0.01 mL increments. | Waters, Binary HPLC Pump, Instrument Equipment, USEDit | Commercially available | Model_Number_1525 | SCR_020875 | 2026-08-01 12:06:59 | 0 | ||||||||||
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Waters: 2996 Photodiode Array Detector Resource Report Resource Website 1+ mentions |
Waters: 2996 Photodiode Array Detector (RRID:SCR_020876) | instrument resource | Waters 2996 PDA Detector can be used for in-vitro diagnostic testing to analyze many compounds, including diagnostic indicators and therapeutically monitored compounds. It also describes detector optics and the principles of Spectral Contrast used in the Millennium32 software for analyzing the data from the PDA detector. | Waters, Photodiode Array Detector, Instrument Equipment, USEDit | Commercially available | Model_Number_2996 | SCR_020876 | 2026-08-01 12:07:08 | 1 | ||||||||||
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Zeiss: Axioplan 2 imaginig system Resource Report Resource Website 1+ mentions |
Zeiss: Axioplan 2 imaginig system (RRID:SCR_020918) | instrument resource | Upright microscopy imaging platform for complex research that is optimized for light transmission and extremely high contrast fluorescence imaging. This complete system comes fully configured for best performance, range and functionality. | Zeiss, Upright Microscope, Instrument Equipment, USEDit | Commercially available | Model_Number_Axioplan | SCR_020918 | 2026-08-01 12:07:00 | 2 | ||||||||||
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Zeiss: Lightsheet Z.1 Fluorescence Microscope Resource Report Resource Website 1+ mentions |
Zeiss: Lightsheet Z.1 Fluorescence Microscope (RRID:SCR_020919) | instrument resource | Light sheet fluorescence microscope for the imaging of large cleared specimens. Lightsheet Z.1 with Clr Plan-Apochromat 20x/1.0 Corr nd=1.38 is used to perform experiments with tissue cleared by Scale medium (Hama et al, Nat Neurosci. 2011), which has a refractive index of n=1.38. | Zeiss, Fluorescence Microscope, Inverted Upright Microscope, Instrument Equipment, USEDit | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_020919.pdf | Model_Number_Zeiss_Lightsheet_Z.1 | https://www.zeiss.com/microscopy/us/products/imaging-systems/lightsheet-z-1.html | SCR_020919 | Zeiss Lightsheet Z.1 | 2026-08-01 12:07:09 | 3 | ||||||||
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Zeiss: 5-Live Resource Report Resource Website |
Zeiss: 5-Live (RRID:SCR_020916) | instrument resource | Visible confocal microscope that acquires the X dimension simultaneously on a line CCD detector while scanning only in the Y dimension. This allows users to increase the speed of image acquisition compared to traditional confocal systems. This system is equipped with two fluorescence detectors and 4 lasers lines at 405nm, 488nm, 561nm and 633nm. It is capable of scanning over 120 FPS for a large field of view. | Zeiss, Spectrophotometer, Instrument Equipment, USEDit | Commercially available | Model_Number_5-Live | SCR_020916 | 2026-08-01 12:07:09 | 0 | ||||||||||
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Zeiss: Auriga Auriga Resource Report Resource Website |
Zeiss: Auriga Auriga (RRID:SCR_020914) | instrument resource | Electron microscope with pulsed laser beam that creates images in high resolution in the nanometre range. This miscroscope allows the user to investigate your samples with X-ray analysis, rework interesting sample positions, and analyze non-conducting material and complex geometries. | Generic | Commercially available | Model_Number_Auriga | SCR_020914 | 2026-08-01 12:07:02 | 0 |
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