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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Phenotypes and eXposures Toolkit Resource Report Resource Website 50+ mentions |
Phenotypes and eXposures Toolkit (RRID:SCR_006532) | PhenX Toolkit | standard specification, database, service resource, narrative resource, catalog, data or information resource, data set | Set of measures intended for use in large-scale genomic studies. Facilitate replication and validation across studies. Includes links to standards and resources in effort to facilitate data harmonization to legacy data. Measurement protocols that address wide range of research domains. Information about each protocol to ensure consistent data collection.Collections of protocols that add depth to Toolkit in specific areas.Tools to help investigators implement measurement protocols. | PhenX project, genome, phenotype, genome-wide association study, genetic variation, genomic study, substance abuse, addiction, substance use, environmental exposure, disease susceptibility, outcome, bio.tools |
is listed by: bio.tools is listed by: Debian has parent organization: RTI International has parent organization: Consensus Measures for Phenotype and Exposure has parent organization: Trans-Omics for Precision Medicine (TOPMed) Program has organization facet: PhenX Phenotypic Terms is organization facet of: Consensus Measures for Phenotype and Exposure |
NHGRI U01 HG004597; NHGRI U41HG007050; NIDA ; OBSSR ; NIMH ; NHLBI ; NIMHD ; TRSP ; NHGRI U24 HG012556; ODP ; NINDS ; NCI |
PMID:21749974 | Restricted | SCR_017475, biotools:PhenX_toolkit, nlx_144102 | https://bio.tools/PhenX_Toolkit | SCR_006532 | Phenotypes and eXposures Toolkit | 2026-08-03 09:33:09 | 61 | ||||
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NIMH Division of Intramural Research Programs Resource Report Resource Website 1+ mentions |
NIMH Division of Intramural Research Programs (RRID:SCR_006860) | DIRP | organization portal, portal, postdoctoral program resource, data or information resource, training resource | The Division of Intramural Research Programs (DIRP) at the National Institute of Mental Health (NIMH) is the internal research division of the NIMH. NIMH DIRP scientists conduct research ranging from studies into mechanisms of normal brain function, conducted at the behavioral, systems, cellular, and molecular levels, to clinical investigations into the diagnosis, treatment and prevention of mental illness. Major disease entities studied throughout the lifespan include mood disorders and anxiety, schizophrenia, obsessive-compulsive disorder, attention deficit hyperactivity disorder, and pediatric autoimmune neuropsychiatric disorders. Because of its outstanding resources, unique funding mechanisms, and location in the nation''s capital, the DIRP is viewed as a national resource, providing unique opportunities in mental health research and research training. Training is conducted in all the Institute''s clinical branches and basic neuroscience laboratories located on the 305-acre National Institutes of Health campus in Bethesda, Maryland. In addition to individualized trainee/mentor-driven postdoctoral training opportunities in the clinical and basic sciences, the DIRP offers Postbaccalaureate Research Training Awards, a Clinical Electives Program, as well as a variety of Summer Research Fellowships and an Undergraduate Internship Program. The mission of the division is to plan and conduct basic, clinical, and translational research to advance understanding of the diagnosis, causes, treatment, and prevention of mental disorders through the study of brain function and behavior; conduct state-of-the-art research that, in part, complements extramural research activities and exploits the special resources of the National Institutes of Health; and provide an environment conducive to the training and development of clinical and basic scientists. In addition the DIRP fosters standards of excellence in the ethical treatment and the provision of clinical care to research subjects; serve as a resource to the NIMH in responding to requests made by the Administration, members of Congress, and citizens'' groups for information regarding mental disorders; and analyzes and evaluates national needs and research opportunities and provides advice to the Institute Director on matters of scientific interest. Core Facilities: * Functional MRI Core * Magnetic Resonance Core * Magnetoencephalography Core * Microarray Core * Neurophysiology Imaging Facility * Non-Human Primate Core * Scientific and Statistical Computing Core * Section on Instrumentation Core * Transgenic Core * Veterinary Medicine Resources |
has parent organization: National Institute of Mental Health is parent organization of: Genes Cognition and Psychosis Program is parent organization of: NIMH CORTEX is parent organization of: NIMH DIRP Scientific and Statistical Computing Core is parent organization of: NIMH Intramural Research Program Clinical Brain Disorders Branch |
NIMH | nlx_143686 | SCR_006860 | NIMH DIRP, Division of Intramural Research Programs at the National Institute of Mental Health, National Institute of Mental Health Intramural Research Program, DIRP at the NIMH, NIMH Intramural Research Program | 2026-08-03 09:33:11 | 3 | ||||||||
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BrainMaps.org Resource Report Resource Website 50+ mentions |
BrainMaps.org (RRID:SCR_006878) | BrainMaps | data repository, data or information resource, service resource, atlas, storage service resource, image repository | An interactive multiresolution brain atlas that is based on over 20 million megapixels of sub-micron resolution, annotated, scanned images of serial sections of both primate and non-primate brains and integrated with a high-speed database for querying and retrieving data about brain structure and function. Currently featured are complete brain atlas datasets for various species, including Macaca mulatta, Chlorocebus aethiops, Felis catus, Mus musculus, Rattus norvegicus, Tyto alba and many other vertebrates. BrainMaps is currently accepting histochemical, immunocytochemical, and tracer connectivity data, preferably whole-brain. In addition, they are interested in EM, MRI, and DTI data. | aves, brain connection, callicebus moloch, c. auratus, connectivity, monodelphis, o. anatinus, tachyglossidae, brain mapping, virtual microscopy, brain atlas, non-primate, nissl stain, nissl, parvalbumin, smi-32, acetylcholinesterase, luxol fast blue, calbindin, myelin, neuroanatomy, image, brain structure, brain function, database, serial section, brain, tract tracing, coronal, horizontal, sagittal, web service, gene, FASEB list |
is used by: NIF Data Federation is used by: Integrated Datasets is used by: Integrated Nervous System Connectivity is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: University of California at Davis; California; USA |
NIMH 2 P20 MH60975; NIMH R01 MH77556 |
PMID:17229579 | Acknowledgement requested | nif-0000-00093, r3d100012117 | http://www.nitrc.org/projects/brainmaps, https://doi.org/10.17616/R3Q64W | SCR_006878 | BrainMaps: An Interactive Multiresolution Brain Atlas, BrainMaps.org: High Resolution Brain Atlases, BrainMaps | 2026-08-03 09:33:16 | 78 | ||||
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WebGestalt: WEB-based GEne SeT AnaLysis Toolkit Resource Report Resource Website 1000+ mentions |
WebGestalt: WEB-based GEne SeT AnaLysis Toolkit (RRID:SCR_006786) | WebGestalt | web service, data access protocol, software resource, web application | Web based gene set analysis toolkit designed for functional genomic, proteomic, and large-scale genetic studies from which large number of gene lists (e.g. differentially expressed gene sets, co-expressed gene sets etc) are continuously generated. WebGestalt incorporates information from different public resources and provides a way for biologists to make sense out of gene lists. This version of WebGestalt supports eight organisms, including human, mouse, rat, worm, fly, yeast, dog, and zebrafish. | proteomic, gene expression, genome wide association study, statistical analysis, functional genomics, protein protein interaction, pathway, regulatory module, analysis toolkit, web application |
is listed by: Gene Ontology Tools is listed by: OMICtools is related to: Gene Ontology is related to: Entrez Gene is related to: KEGG is related to: Pathway Commons is related to: WikiPathways is related to: PheWAS Catalog is related to: webgestaltr has parent organization: Vanderbilt University; Tennessee; USA |
NIAAA U01 AA016662; NIAAA U01 AA013512; NIDA P01 DA015027; NIMH P50 MH078028; NIMH P50 MH096972; NCI U24 CA159988; NIGMS R01 GM088822 |
PMID:24233776 PMID:15980575 PMID:14975175 |
Free, Freely available | OMICS_02222, nif-0000-30622 | http://bioinfo.vanderbilt.edu/webgestalt/ | SCR_006786 | GOTM, Gene Ontology Tree Machine, WebGestalt2, WEB-based GEne SeT AnaLysis Toolkit, WebGestalt | 2026-08-03 09:33:09 | 2760 | ||||
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NeuroExpresso Resource Report Resource Website 10+ mentions |
NeuroExpresso (RRID:SCR_015724) | data or information resource, software resource, database, web application | Database of mouse brain cell type-specific gene expression datasets. NeuroExpresso is able to demonstrate the use of marker genes for acquiring cell type specific information from whole tissue expression. | mouse brain, marker gene, tissue expression, microarray, gene expression, rna sequencing | NeuroDevNet ; CAMH ; NIMH MH077159; NIMH MH111099; NIGMS 719GM076990; NSERC Discovery Grant |
Freely available | https://github.com/oganm/neuroexpresso | SCR_015724 | 2026-08-03 09:36:24 | 24 | |||||||||
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RDoC Resource Report Resource Website 100+ mentions |
RDoC (RRID:SCR_002244) | RDoC | narrative resource, data or information resource, knowledge environment, standard specification | NIMH Strategic Plan developing, for research purposes, new ways of classifying psychopathology based on dimensions of observable behavior and neurobiological measures. In brief, the effort is to define basic dimensions of functioning (such as fear circuitry or working memory) to be studied across multiple units of analysis, from genes to neural circuits to behaviors, cutting across disorders as traditionally defined. The intent is to translate rapid progress in basic neurobiological and behavioral research to an improved integrative understanding of psychopathology and the development of new and/or optimally matched treatments for mental disorders. The various domains of functioning, and their constituent elements, are being defined by an ongoing series of consensus workshops; input from the research community and other interested stakeholders is encouraged. | cognitive system, neural circuit, behavior, cognition, comorbidity, psychiatric diagnosis |
is related to: RDoCdb has parent organization: National Institute of Mental Health |
Mental disease | NIMH | PMID:24016027 PMID:23902986 PMID:22577302 PMID:21198381 PMID:20939653 PMID:20929969 PMID:20595427 |
Free, Freely available | nlx_155557 | SCR_002244 | Research Domain Criteria | 2026-08-03 09:31:49 | 156 | ||||
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Cognitive Paradigm Ontology Resource Report Resource Website 1+ mentions |
Cognitive Paradigm Ontology (RRID:SCR_002235) | CogPO | controlled vocabulary, data or information resource, ontology | Ontology used to describe the experimental conditions within cognitive and behavioral experiments, primarily in humans for application and use in the functional neuroimaging community. CogPO has been developed through the integration of the Functional Imaging Biomedical Informatics Research Network (FBIRN) Human Imaging Database (HID) and the BrainMap Database. The design of CogPO concentrates on what can be observed directly: categorization of each paradigm in terms of (1) the stimulus presented to the subjects, (2) the requested instructions, and (3) the returned response. | functional neuroimaging, owl, cognition, behavior |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: BioPortal is related to: Human Imaging Database has parent organization: University of Texas Health Science Center at San Antonio; Texas; USA has parent organization: Mind Research Network |
NIMH 1R01MH084812-01A1 | Free, Freely available | nlx_155537 | http://www.nitrc.org/projects/cogpo | SCR_002235 | 2026-08-03 09:31:43 | 9 | ||||||
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Schizophrenia Research Forum Resource Report Resource Website 10+ mentions |
Schizophrenia Research Forum (RRID:SCR_002899) | SRF | topical portal, data or information resource, portal, disease-related portal | The mission of the SRF is to help in the search for causes, treatments, and understanding of the devastating disease of schizophrenia. Our goal is to foster collaboration among researchers by providing an international online forum where ideas, research news, and data can be presented and discussed. The website is intended to bring together scientists working specifically on schizophrenia, scientists researching related diseases, and basic scientists whose work can shed light on these diseases. In this way, we hope that the Schizophrenia Research Forum will be a catalyst for creative thinking in the quest to understand a deeply complex disease. It is our goal to create and maintain up-to-date content of the highest quality. The website is free of charge to users, independent of industry sponsorship, and open to the public. Though geared toward researchers, we welcome other visitorspeople with mental illnesses, families, the media, and others who need accurate information on research into schizophrenia. We do, however, require that users who wish to post comments and other materials be registered members. All such materials are subject to approval by the editorial team. As a forum, we encourage participation and welcome feedback from the community. | schizophrenia | is parent organization of: Schizophrenia Research Forum: Published Candidate Genes for Schizophrenia | Schizophrenia | NIMH ; Brain and Behavior Research Foundation |
nif-0000-00154 | SCR_002899 | Schziophrenia Research Forum - A Catalyst for Creative Thinking | 2026-08-03 09:31:53 | 15 | ||||||
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NIH Image Resource Report Resource Website 1000+ mentions |
NIH Image (RRID:SCR_003073) | NIH Image | image processing software, software application, data processing software, source code, image analysis software, software resource | Public image processing and analysis program for Macintosh. | image processing application, public image processing software, imagej |
is listed by: SoftCite is related to: ImageJ is related to: BrainImage Software is related to: Object-Image has parent organization: National Institutes of Health has parent organization: National Institute of Mental Health |
NINDS ; NIMH |
Free, download Freely available | nif-0000-30469 | https://imagej.net/nih-image/index.html | SCR_003073 | 2026-08-03 09:31:57 | 4412 | ||||||
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NIH NeuroBioBank Resource Report Resource Website 100+ mentions |
NIH NeuroBioBank (RRID:SCR_003131) | NBB | tissue bank, biomaterial supply resource, material resource, brain bank | National resource for investigators utilizing human post-mortem brain tissue and related biospecimens for their research to understand conditions of the nervous system. Federated network of brain and tissue repositories in the United States that collects, evaluates, stores, and makes available to researchers, brain and other tissues in a way that is consistent with the highest ethical and research standards. The NeuroBioBank ensures protection of the privacy and wishes of donors. Provides information to the public about the need for tissue donation and how to register as a donor. | human post-mortem brain tissue, human brain, brain tissue, tissue, adult, child, brain donation, human post-mortem brain tissue and related biospecimens, |
is used by: BRAIN Initiative Cell Atlas Network is used by: BICCN is listed by: One Mind Biospecimen Bank Listing has parent organization: National Institutes of Health |
Brain disorder, Autism spectrum disorder, Autism, Major Depressive Disorder, Schizophrenia, Multiple Sclerosis, Epilepsy, Traumatic brain injury | NIMH ; NINDS ; NICHD ; NIA ; NIDA |
PMID:29496155 | Free, Freely available | nlx_156783 | SCR_003131 | NeuroBioBank, National Institutes of Health NeuroBioBank | 2026-08-03 09:31:58 | 177 | ||||
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NIMH Data Archive Resource Report Resource Website 100+ mentions |
NIMH Data Archive (RRID:SCR_004434) | NDA | data repository, data or information resource, database, storage service resource, service resource | The National Institute of Mental Health Data Archive (NDA) makes available human subjects data collected from hundreds of research projects across many scientific domains. Research data repository for data sharing and collaboration among investigators. Used to accelerate scientific discovery through data sharing across all of mental health and other research communities, data harmonization and reporting of research results. Infrastructure created by National Database for Autism Research (NDAR), Research Domain Criteria Database (RDoCdb), National Database for Clinical Trials related to Mental Illness (NDCT), and NIH Pediatric MRI Repository (PedsMRI). | afni brik, ascii, bshort, bfloat, connectome file format, cifti, clinical neuroinformatics, cor, dicom, imaging genomics, inc, minc2, nifti, os independent, philips par/rec, tex, vrml, phenotype, neuroimaging, genomic, gender, male, female, dti, fmri, mri, spectroscopy, eeg, microarray, snp, cnv, next-generation sequencing, gene regulation, gene expression, genotyping, pedigree, clinical assessment, FASEB list |
uses: HED Tags is used by: National Database for Clinical Trials related to Mental Illness is used by: RDoCdb is used by: NIH Heal Project is recommended by: National Library of Medicine is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: re3data.org is related to: National Database for Clinical Trials related to Mental Illness is related to: RDoCdb has parent organization: National Institute of Mental Health hosts: GUID Tool |
Autism, Autism spectrum disorder, Asperger Syndrome, Normal control, Sibling control, Parental control, Fragile X syndrome | NIMH ; NINDS ; NIEHS ; NICHD ; Center for Information Technology |
Restricted | nlx_143735, r3d100010717, r3d100012653 | http://www.nitrc.org/projects/ndarportal, https://data-archive.nimh.nih.gov/, https://doi.org/10.17616/R37K63, https://doi.org/10.17616/R3XV5P | http://ndar.nih.gov/ | SCR_004434 | NDAR, National Database for Autism Research, National Institute of Mental Health Data Archive, National Database for Autism Research (NDAR) | 2026-08-03 09:32:32 | 291 | |||
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TrackVis Resource Report Resource Website 100+ mentions |
TrackVis (RRID:SCR_004817) | TrackVis | image processing software, software toolkit, software application, image reconstruction software, data processing software, image analysis software, software resource, data visualization software | TrackVis is software tool that can visualize and analyze fiber track data from diffusion MR imaging (DTI/DSI/HARDI/Q-Ball) tractography. It does NOT perform actual fiber tracking. Diffusion Toolkit is a set of tools that reconstruct diffusion imaging data and generate fiber track data for TrackVis to visualize. Because these two sets of tools were developed and maintained separately and each has distinguished funtionalities, they decided to distribute them as two separate programs for the ease of maintenance and upgrade. You do need both of them to perform complete diffusion data processing and analysis. Features of TrackVis include: * Cross-platform. Works on Windows, Mac OS X and Linux with native look and feel. * A variety of track filters (track selecting methods) allowing users to explore and locate specific bundles with ease. * Multiple rendering modes with customizable scalar-driven color codes. * Real-time parameter adjustment and 3D render. * Open format of the track data file allowing users to integrate customized scalar data into the track file and visualize and analyze it. Save and restore scenes in XML style scene file. * Statistical scalar analysis of tracks and ROIs. * Synchronized real-time multiple dataset analysis and display allowing time-point and/or subject comparison. Synchronized analysis and display on same dataset can also be performed in real-time remotely over the network. * Upfront in-line parameter adjustment in real-time. No tedious pop-up dialogs. TrackVis works with Track File created by Diffusion Toolkit. Diffusion Toolkit processes raw DICOM, Nifti format and ANALYZE images. TrackVis and Diffusion Toolkit are cross-platform software. They can run on Windows XP, Mac OS X as well as Linux. | mri, dti, diffusion spectrum image, diffusion imaging, image reconstruction, diffusion mr fiber tracking, visualization, analyze, c++, console (text based), dicom, fiber tracking, image reconstruction, linux, macos, microsoft, magnetic resonance, nifti, posix/unix-like, tractography, visualization, win32 (ms windows), windows |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: CAMINO-TRACKVIS |
MGH GCRC ; NIMH 5R01MH064044 |
Free for academic and non-profit research use, Non-commercial, For other purposes, Please contact them | nlx_143916 | SCR_004817 | TrackVis and Diffusion Toolkit | 2026-08-03 09:32:31 | 491 | ||||||
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Neuromorphometrics Resource Report Resource Website 100+ mentions |
Neuromorphometrics (RRID:SCR_005656) | Neuromorphometrics Inc. | organization portal, portal, service resource, web application, data or information resource, software resource | Neuromorphometrics provides brain labeling and measurement services. Given raw MRI brain scans, we make precise quantitative measurements of the volume, shape, and location of specific neuroanatomical structures. Web tool for brain measurement services. Used for modeling living human brain and make quantitative measurements of volume, shape, and location of specific neuroanatomical structures using given MRI brain scans. Automated analyses are manually guided, inspected and certified by a neuroanatomical expert. Resource of neuroanatomically labeled MRI brain scans database. Resource for neuroanatomical localization and identification: NeuAtlas. | brain, human, modeling, measurement, quantitative, volume, shape, location, neuroanatomical, structure, MRI, scan, analysis, database, FASEB list |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: BrainColor: Collaborative Open Labeling Online Resource is related to: 2012 MICCAI Multi-Atlas Labeling Challenge Data is parent organization of: NVM is parent organization of: Manually Labeled MRI Brain Scan Database is parent organization of: MRI Neuroanatomy Labeling Services |
NIMH R43 MH084358 | Free Demo available for download, Commercially available, Discount for academic use available | SCR_014141, nlx_149079 | http://www.nitrc.org/projects/brain_labeling | SCR_005656 | MRI Brain Anatomy Labeling Services, Quantitative Measurements in MR Brain Images | 2026-08-03 09:32:44 | 363 | |||||
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PubBrain Resource Report Resource Website 1+ mentions |
PubBrain (RRID:SCR_005387) | PubBrain | production service resource, data analysis service, service resource, database, analysis service resource, data or information resource | A literature search and visualization tool that allows end users to enter any PubMed query and see that query rendered as a heatmap illustrating which regions of interest are most commonly mentioned within the search results. To use PubBrain, simply enter any valid PubMed search in the search box. | neuroanatomy |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: PubMed has parent organization: Poldracklab Portal |
NIMH RO1MH082795; NIMH PL1MH083271; NIDCR UL1DE019580; NCRR P20RR020750 |
nlx_144484 | http://www.nitrc.org/projects/pubbrain | SCR_005387 | PubBrain Database, pubbrain.org | 2026-08-03 09:32:40 | 8 | ||||||
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NIMH Clinical Trials Resource Report Resource Website |
NIMH Clinical Trials (RRID:SCR_005613) | NIMH Clinical Trials | topical portal, data or information resource, portal | NIMH supports research studies on mental health and disorders. Participate, refer a patient or learn about results of studies in ClinicalTrials.gov, the NIH/National Library of Medicine''''s registry of federally and privately funded clinical trials for all disease. Find NIH-funded studies currently recruiting participants in the following mental health topics: * Anxiety Disorders ** Generalized Anxiety Disorder ** Obsessive-Compulsive Disorder (OCD) ** Panic Disorder ** Post-traumatic Stress Disorder (PTSD) ** Social Phobia (Social Anxiety Disorder) * Attention Deficit Hyperactivity Disorder (ADHD, ADD) * Autism Spectrum Disorders (Pervasive Developmental Disorders) * Bipolar Disorder (Manic-Depressive Illness) * Borderline Personality Disorder * Depression * Eating Disorders * HIV/AIDS * Schizophrenia * Suicide Prevention Information Resources for NIMH Researchers Conducting Clinical Trials * Limited Access Datasets from NIMH-Supported Clinical Trials * NIMH Policy for Recruitment of Participants in Clinical Research * NIMH Policy on Data and Safety Monitoring in Extramural Investigator-Initiated Clinical Trials * Register a study with ClinicalTrials.gov | clinical trial, mental health, mental disease, attention deficit-hyperactivity disorder, anxiety disorder, autism, bipolar disorder, borderline personality disorder, depression, depressive disorder, post-traumatic stress disorder, schizophrenia, suicide, aids, hiv, generalized anxiety disorder, obsessive-compulsive disorder, panic disorder, social anxiety disorder, pervasive developmental disorder, eating disorder |
is related to: ClinicalTrials.gov has parent organization: National Institute of Mental Health is parent organization of: Limited Access Datasets From NIMH Clinical Trials |
NIMH | nlx_146231 | SCR_005613 | National Institute of Mental Health Clinical Trials | 2026-08-03 09:32:54 | 0 | |||||||
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Neuroscience and Psychiatry Module 1: Translating Neural Circuits into Novel Therapeutics Resource Report Resource Website |
Neuroscience and Psychiatry Module 1: Translating Neural Circuits into Novel Therapeutics (RRID:SCR_005609) | Neuroscience and Psychiatry Module 1, Neuroscience and Psychiatry Module, Neuroscience Psychiatry Module | narrative resource, video resource, data or information resource, training material | This is the first in a series of modules on neuroscience and psychiatry. This module explores research on cognitive deficits, a core feature of schizophrenia and the single best predictor of functional outcomes in this disorder for which we currently have no treatments. This module is an example of how translational neuroscience can provide clues for the development of promising novel therapeutics. | neuroscience, psychiatry, neural circuit, therapeutics, schizophrenia |
is related to: Neuroscience and Psychiatry Module 2: Fear/Safety Anxiety and Anxiety Disorders has parent organization: NIMH Educational Resources |
NIMH | nlx_146228 | SCR_005609 | Neuroscience and Psychiatry Module 1 - Translating Neural Circuits into Novel Therapeutics, Translating Neural Circuits into Novel Therapeutics, Neuroscience Psychiatry Module 1: Translating Neural Circuits into Novel Therapeutics | 2026-08-03 09:32:54 | 0 | |||||||
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Analysis of Functional NeuroImages Resource Report Resource Website 1000+ mentions |
Analysis of Functional NeuroImages (RRID:SCR_005927) | AFNI | software toolkit, software application, data processing software, source code, data analysis software, software resource, data visualization software | Set of (mostly) C programs that run on X11+Unix-based platforms (Linux, Mac OS X, Solaris, etc.) for processing, analyzing, and displaying functional MRI (FMRI) data defined over 3D volumes and over 2D cortical surface meshes. AFNI is freely distributed as source code plus some precompiled binaries. | c program, unix, fmri, solaris, nifti-1 support, 2d surface analysis, 3d surface analysis, visualization |
uses: Neuroimaging Data Model is used by: 3dsvm is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: Biositemaps is related to: BASH4RfMRI has parent organization: National Institute of Mental Health is parent organization of: Mapping Data to the Talairach Atlas works with: NIAG Addiction Data |
NIMH | Free, Open Source, Runs on Linux, Runs on Mac OS | nif-0000-00259 | http://www.nitrc.org/projects/afni | SCR_005927 | AFNI NIfTI Server, AFNI and NIfTI Server | 2026-08-03 09:32:57 | 2107 | |||||
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NIH Pediatric MRI Data Repository Resource Report Resource Website |
NIH Pediatric MRI Data Repository (RRID:SCR_014149) | NIHPD | image collection, data or information resource, database | A database which contains longitudinal structural MRIs, spectroscopy, DTI and correlated clinical/behavioral data from approximately 500 healthy, normally developing children, ages newborn to young adult. | database, image collection, structural mri, dti, spectroscopy, human brain, child |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: National Institutes of Health |
NICHD ; National Institute on Drug Abuse ; NIMH ; NINDS |
Available to the research community, Access must be granted | http://pediatricmri.nih.gov/nihpd/info/index.html | SCR_014149 | Pediatric MRI Data Repository, NIH MRI Study of Normal Brain Development Pediatric MRI Data Repository | 2026-08-03 09:35:23 | 0 | ||||||
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HED Tags Resource Report Resource Website 1+ mentions |
HED Tags (RRID:SCR_014074) | HED | narrative resource, data or information resource, standard specification | Strategy guide for HED Annotation. Framework for systematically describing laboratory and real world events.HED tags are comma separated path strings. Organized in forest of groups with roots Event, Item, Sensory presentation, Attribute, Action, Participant, Experiment context, and Paradigm. Used for preparing brain imaging data for automated analysis and meta analysis. Applied to brain imaging EEG, MEG, fNIRS, multimodal mobile brain or body imaging, ECG, EMG, GSR, or behavioral data. Part of Brain Imaging Data Structure standard for brain imaging. | Data, structure, standard, EEG, brain, imaging, comma, separated, path, string, analysis, MEG, fNIRS, multimodal, ECG, EMG, GSR, behavioral, BRAIN Initiative |
is used by: NIMH Data Archive is used by: HeadIT is used by: OpenNeuro is recommended by: BRAIN Initiative has parent organization: University of California at San Diego; California; USA |
Swartz Foundation ; Army Research Laboratory Cooperative Agreement ; NIMH R01MH084819; NINDS R01 NS047293 |
PMID:27799907 | Free, Freely available | SCR_017630 | SCR_014074 | Hierarchical Event Descriptor Tags, Hierarchical Event Descriptor, HED, HED tags | 2026-08-03 09:35:28 | 7 | |||||
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WINGS Resource Report Resource Website 10+ mentions |
WINGS (RRID:SCR_013997) | data management software, systems interoperability software, software resource, software application | A software application which assists scientists with designing computational experiments. WINGS is a semantic workflow system which incorporates semantic constraints about datasets and workflow components into its workflow representations. The workflow system has an open modular design and can be easily integrated with other existing workflow systems and execution frameworks to extend them with semantic reasoning capabilities. WINGS also allows users to express high-level descriptions of their analysis goals, and assists them by automatically and systematically generating possible workflows that are consistent with that request. In cases where privacy or off-line use are important, WINGS can submit workflows in a scripted format for execution in the local host. It uses Pegasus or OODT as the execution engine for large-scale distributed workflow execution. | semantic workflow system, software application, computational experiment, computational experiment design, data management software |
is listed by: Connected Researchers is related to: Connected Researchers |
NSF CCF-0725332; NSF IIS-0917328; NSF IIS-0948429; NSF CSR-0615412; NIMH U24 MH068457; Defense Advanced Research Projects Agency HR0011-07-C-0060; Air Force Research Laboratory FA8750-06-C-0210 |
Free, Public | SCR_013997 | Workflow Instance Generation and Specialization | 2026-08-03 09:35:26 | 27 |
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If you are logged into RRID you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
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