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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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MassLynx Resource Report Resource Website 5000+ mentions |
MassLynx (RRID:SCR_014271) | data acquisition software, software resource, software application, data management software, data analysis software, data processing software | Software which can acquire, analyze, manage, and share mass spectrometry data. MassLynx controls any Waters mass spectrometry system, from sample and solvent management components to mass spectrometer and auxiliary detectors. The software can acquire nominal mass, exact mass, MS/MS and exact mass MS/MS data. The software system also maintains and consolidates all user sample data. Optional Application Manager programs provide additional information for specific MS analyses and data., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | data acquisition software, data analysis software, data management software, mass spectrometry | is listed by: SoftCite | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_014271 | MassLynx MS Software | 2026-08-08 12:00:22 | 5809 | |||||||||
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SCORE Resource Report Resource Website 100+ mentions |
SCORE (RRID:SCR_014165) | data or information resource, narrative resource, experimental protocol | A collection of methods for comparing the performance of different image algorithms. These methods generate quantitative scores that measure divergences to a standard. | experiment protocol, method, different image algorithm, quantitative score |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: University of Utah; Utah; USA |
NLM HHSN276201000584P; NIBIB 1R41 EB011796 |
SCR_014165 | 2026-08-08 12:00:06 | 481 | ||||||||||
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PsyGeNET Resource Report Resource Website 10+ mentions |
PsyGeNET (RRID:SCR_014406) | data or information resource, software resource, software application, database, data analysis software, data processing software | Knowledge platform on psychiatric disorders and their genes. Resource for exploratory analysis of psychiatric diseases and their associated genes. PsyGeNET is composed of database and set of analysis tools and is the result of the integration of information from DisGeNET and data extracted from the literature by text mining, followed by curation by domain experts. | psychiatric disease, associated gene, database, analysis tool, bio.tools |
is used by: DisGeNET is listed by: Debian is listed by: bio.tools |
Psychiatric disorder | DOI:10.1093/bioinformatics/btv301 | Available for the research community | biotools:psygenet2r | https://bio.tools/psygenet2r | SCR_014406 | Psychiatric disorders Gene association NETwork, Psychiatric disorders Gene association Network | 2026-08-08 12:00:10 | 11 | |||||
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Muse: Portable Scalp EEG Device (Muse S Athena) Resource Report Resource Website 100+ mentions |
Muse: Portable Scalp EEG Device (Muse S Athena) (RRID:SCR_014418) | instrument resource, mobile app, software resource, software application | It is a portable scalp electroencephalography (EEG) system that can be used to measure brain activity. It is battery powered and has four active electrodes located at 10-20 coordinates TP9, AF7, AF8, and TP10, a common mode reference, and a driven right leg. It includes an accelerometer and gyroscope, and works with desktop and mobile EEG acquisition and visualization software. Muse 2 expands upon the first model with increasingly robust hardware. | portable, scalp electroencephalography, brain activity, mobile app, data acquisition software, data analysis software | Ontario Centres of Excellence ; Natural Sciences and Engineering Research Council of Canada |
DOI:10.1371/journal.pone.0130129 | Public, Commercial product, Headband requires purchase, App is free | SCR_014418 | , Muse 2, Muse: the brain sensing headband | 2026-08-08 12:00:10 | 326 | ||||||||
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FlexField Software Resource Report Resource Website 1+ mentions |
FlexField Software (RRID:SCR_014420) | software application, standalone software, software resource, systems interoperability software | Transformation software designed to help model and change Oracle account charts. This can be used to reorganize Oracle accounts due to events such as mergers, acquisitions, regulatory requirements and the need for more ranges when the data outgrows the range of the current chart of accounts. FlexField transforms an existing accounting flexfield segment structure, values, code combinations, and CCIDs according to user mappings, and applies the new code combinations and CCIDs. It propagates the change throughout an existing E-Business Suite data, everywhere the accounting flexfield is used. It removes the old code combinations and CCIDs, and aligns the new Chart of Accounts (COA) so that all balances belonging to a single CCID are summarized into a single line. | software, oracle, ccid, account chart, segment structure, accounting, chart of accounts | Commercial product, License fee | SCR_014420 | 2026-08-08 12:00:31 | 2 | |||||||||||
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Clinical Islet Transplantation Consortium (CITC) Resource Report Resource Website 1+ mentions |
Clinical Islet Transplantation Consortium (CITC) (RRID:SCR_014385) | CITC, CIT | access service resource, service resource | Network of clinical centers and a data coordinating center established to conduct studies of islet transplantation in patients with type 1 diabetes. | type 1 diabetes, consortium, network, islet transplantation, clinical |
is listed by: NIDDK Information Network (dkNET) is listed by: NIDDK Research Resources is listed by: Diabetes Research Centers |
Type 1 diabetes, Diabetes | NIDDK U01 DK070431; NIAID |
SCR_014385 | Clinical Islet Transplantation Consortium | 2026-08-08 12:00:31 | 1 | |||||||
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Navios Software Resource Report Resource Website 1+ mentions |
Navios Software (RRID:SCR_014421) | data acquisition software, software resource, software application, data analysis software, data processing software | Used in tandem with the Navios Flow Cytometer in order to acquire data for use in analyzing cellular characteristics. | flow cytometry, machine software, control software, data analysis software, data acquisition software, lymphocyte, multicolor | Commercial product | http://www.beckman.com/coulter-flow-cytometry/instruments/flow-cytometers/navios | SCR_014421 | Navios Tetra Software | 2026-08-08 12:00:11 | 3 | |||||||||
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BD Accuri C6 Plus Resource Report Resource Website 50+ mentions |
BD Accuri C6 Plus (RRID:SCR_014422) | data acquisition software, software resource, software application, data analysis software, data processing software | Software used for collecting and analyzing flow cytometry data. Files can be exported in FCS 3.1 format for import into other flow cytometry analysis programs such as FCS Express™ software and FlowJo™ software. | data analysis software, data acquisition software, flow cytometry, flow cytometry analysis program | Commercial product | SCR_014422 | 2026-08-08 12:00:24 | 56 | |||||||||||
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MSstats Resource Report Resource Website 100+ mentions |
MSstats (RRID:SCR_014353) | software resource, software application, data analysis software, data processing software | A package for statistical relative quantification of proteins and peptides in global, targeted, and data-independent proteomics. It handles shotgun, label-free, and label-based Selected Reaction Monitoring, as well as SWATH/DIA (Data Independent Acquisition) experiments. MSStats provide functionality for data processing and visualization, model-based statistical analysis, and model-based sample size calculations. | data independent acquisition, statistical relative quantification, protein, peptide, data analysis software, data processing, data visualization, proteomics |
uses: R Project for Statistical Computing is used by: Skyline is listed by: Bioconductor |
National Science Foundation CAREER award 1054826 | DOI:10.1186/1471-2105-13-S16-S6 | Acknowledgement requested, Available for download | http://www.bioconductor.org/packages/release/bioc/html/MSstats.html | SCR_014353 | MSStats | 2026-08-08 12:00:23 | 239 | ||||||
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SimThyr Resource Report Resource Website 10+ mentions |
SimThyr (RRID:SCR_014351) | software resource, software application, simulation software | Open source simulation software for thyroid homeostasis, based on published nonlinear model of pituitary thyroid feedback control. Simulates pituitary thyroid feedback control, which allows users to study relationship between structure and behaviour of thyroid homeostasis. | thyroid, homeostasis, simulation, software, modelling, pituitary, model |
is related to: SimulaBeta has parent organization: Ludwig-Maximilians-University; Munich; Germany has parent organization: Ruhr University Bochum; North Rhine-Westphalia; Germany |
PMID:23365787 DOI:10.1080/01969720490443354 DOI:10.1155/2012/351864 DOI:10.5281/zenodo.1303822 |
Free, Available for download, Freely available | DOI:10.5281/zenodo.1303822 | https://doi.org/10.5281/zenodo.1303822 | SCR_014351 | 2026-08-08 12:00:10 | 11 | |||||||
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CyberUnits Resource Report Resource Website 1+ mentions |
CyberUnits (RRID:SCR_014358) | software toolkit, software library, software resource, software application, simulation software | A cross-platform class library for development of high-performance life science computer simulations. It supports modelling for biomedical cybernetics and systems biology with Object Pascal. It contains a set of Pascal units for rapid programming of high-performance computer simulations called the Brick collection. | simulation software, modeling, pascal, software library |
uses: Free Pascal Compiler is used by: SimulaBeta is used by: SimulAdren is related to: Lazarus IDE |
DOI:10.13140/RG.2.1.4227.4963 | May be used with open source software and in commercial applications, Source code is available, Bricks collection is available for download | SCR_014358 | 2026-08-08 12:00:23 | 1 | |||||||||
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VDJ Server Resource Report Resource Website 10+ mentions |
VDJ Server (RRID:SCR_014356) | web application, collaboration tool, software resource, software application, data analysis software, data processing software | A web application immune repertoire management, analysis, and archiving. Users can collaborate and share data either privately or publicly. Users can perform a variety of tasks, such as create and share projects with other users, conduct pre-processing tasks on single end reads, run IgBlast, and obtain basic repertoire characterization results for B cell receptor and T cell receptor repertoires. | omics data, web application, scalable resource, immune repertoire |
has parent organization: University of Texas Southwestern Medical Center; Texas; USA has parent organization: J. Craig Venter Institute has parent organization: Yale University; Connecticut; USA |
NIAID 1R01A1097403 | Free, Open source analysis software is available for local use | http://wiki.vdjserver.org/vdjserver/index.php/VDJServer_Wiki | SCR_014356 | VDJServer | 2026-08-08 12:00:30 | 18 | |||||||
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Brain Entropy Mapping Toolbox Resource Report Resource Website 10+ mentions |
Brain Entropy Mapping Toolbox (RRID:SCR_014470) | BENtbx | image processing software, software toolkit, software resource, software application, data processing software | A toolkit for mapping brain entropy using fMRI. It uses several functions from ASLtbx. At its core, the toolkit is a collection of batch scripts that implement a pipeline for processing fMRI data in order to get Sample entropy for each voxel. | brain, entropy, fmri, mapping, software toolkit, image processing software | PMID:24657999 | Acknowledgement required, Register to download application and sample data | SCR_014470 | Brain Entropy Mapping Toolbox: BENtbx | 2026-08-08 12:00:31 | 12 | ||||||||
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Optseq Resource Report Resource Website 100+ mentions |
Optseq (RRID:SCR_014363) | data acquisition software, software resource, software application, standalone software, data processing software | Software tool for automatically scheduling events for rapid-presentation event-related (RPER) fMRI experiments (the schedule is the order and timing of events). Events in RPER are presented closely enough in time that their hemodynamic responses will overlap. This requires that the onset times of the events be jittered in order to remove the overlap from the estimate of the hemodynamic response. RPER is highly resistant to habituation, expectation, and set because the subject does not know when the next stimulus will appear or which stimulus type it will be. | fmri, scheduling event, event, rper, hemodynamic response, stimulus, stochastic design | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | Available for download | SCR_005976, nlx_151349 | http://www.nitrc.org/projects/optseq | SCR_014363 | Optseq2, Optseq - fMRI Event Scheduler | 2026-08-08 12:00:30 | 341 | |||||||
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Free Pascal Compiler Resource Report Resource Website 10+ mentions |
Free Pascal Compiler (RRID:SCR_014360) | FPC, FPK | software development environment, software resource, software application, software development tool | Free Pascal is a 32, 64 and 16 bit professional Object Pascal compiler targeting multiple processor architectures and operating systems. Documentation, including guides and manuals, are available on the website. | software development environment, software development tool, compiler, pascal, object pascal |
is used by: CyberUnits is used by: SimulAdren is related to: Lazarus IDE |
Free for download as source code, Pre-compiled for multiple platforms | SCR_014360 | 2026-08-08 12:00:30 | 21 | |||||||||
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NIS-Elements Resource Report Resource Website 1000+ mentions Rating or validation data |
NIS-Elements (RRID:SCR_014329) | software toolkit, software resource, software application, data analysis software, data processing software | Microscope imaging software suite used with Nikon products. NIS-Elements includes software applications for advanced and standard research, documentation, confocal microscopy, and high-content analysis., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | element, microscope imaging software, software suite, nikon |
is listed by: SoftCite works with: Nikon: ECLIPSE Ti2 inverted microscope |
THIS RESOURCE IS NO LONGER IN SERVICE | SCR_014329 | Nikon Instruments Software Elements, NIS Elements, Nikon Instruments Software | 2026-08-08 12:00:23 | 3515 | |||||||||
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IMAGIC Resource Report Resource Website 100+ mentions |
IMAGIC (RRID:SCR_014447) | image processing software, image analysis software, software resource, software application, data processing software | An image analysis software that can process spectra and other multi-dimensional data-sets. The software package is aimed at processing large data sets from (cryo-) electron microscopy, especially in the field of single particle analyses. This software can be used with light and raster-tunneling microscopes, computer tomographs, FT-IR spectrometers and other signal collecting devices. This resource provides three-dimensional data processing and angular reconstitution modules that allow the three-dimensional reconstruction with point-group symmetry from the two dimensional electron microscopy projections. These models aid in the analysis of the macromolecules. | image analysis, spectra, multi-dimensional data, macromolecule, 3d processing, tomograph, spectrometer, software environment | is listed by: SoftCite | PMID:8742718 | Commercial, Account needed for download | SCR_014447 | 2026-08-08 12:00:31 | 217 | |||||||||
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AMT Image Capture Software Resource Report Resource Website 1+ mentions |
AMT Image Capture Software (RRID:SCR_014333) | image acquisition software, image processing software, image analysis software, data acquisition software, software resource, software application, data processing software | AMT camera system software that performs digital image acquisition, processing, and storage. An operations manual and software specifications are available on the main site. | camera operating software, system management software, digital image acquisition, digital image processing, digital image storage | Only for AMT camera systems | SCR_014333 | 2026-08-08 12:00:23 | 5 | |||||||||||
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Macrogen Resource Report Resource Website 5000+ mentions |
Macrogen (RRID:SCR_014454) | material analysis service, production service resource, analysis service resource, service resource, biomaterial analysis service | A company that provides a variety of next generation sequencing services. The company provides researchers with whole genome resequencing, exome sequencing, targeted sequencing, transcriptomics, and epigenome sequencing. | sequencing assay, sequencing analysis software, next generation sequencing | is affiliated with: Axeq Technologies | Commercial entity | SCR_014454 | Macrogen Inc. | 2026-08-08 12:00:31 | 6322 | |||||||||
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SCRATCH Resource Report Resource Website 100+ mentions |
SCRATCH (RRID:SCR_014291) | production service resource, web service, software resource, data access protocol, analysis service resource, service resource | Web protein structure and structural feature prediction server.Software suite includes predictors for secondary structure, relative solvent accessibility, disordered regions, domains, disulfide bridges, single mutation stability, residue contacts versus average, individual residue contacts and tertiary structure. User provides amino acid sequence and selects desired predictions, then submits to the server. | Protein predictor, secondary structure, relative solvent accessibility, disordered regions, domains, disulfide bridges, single mutation stability, residue contacts versus average, individual residue contacts, tertiary structure prediction, bio.tools |
is listed by: Debian is listed by: bio.tools |
PMID:15980571 | Free, Freely available | biotools:scratch | https://bio.tools/scratch | http://www.igb.uci.edu/servers/psss.html | SCR_014291 | Scratch Protein Predictor | 2026-08-08 12:00:09 | 141 |
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