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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Specification URL Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
PubGet
 
Resource Report
Resource Website
1+ mentions
PubGet (RRID:SCR_013770) software resource A web application which allows users to access life science research articles in PDF format. Users can search across all affiliated institution's subscriptions. Tools are provided to manage papers, which include downloading citations and creating email alerts for new, relevant articles. web application, search engine, life sciences, articles, research, journals is listed by: Connected Researchers
is related to: Connected Researchers
Free, Public SCR_013770 2026-08-08 12:00:16 6
Culture Collection of Algae at the University of Cologne
 
Resource Report
Resource Website
Culture Collection of Algae at the University of Cologne (RRID:SCR_013772) CCAC An institution and biomaterial supply resource which houses more than 3500 strains of algae. The majority of the strains are derived from freshwater/terrestrial habitats while 15% are representative of marine and brackish water strains. 15% of the strains are axenic. 50% of the strains are currently available to the public and can be ordered from the CCAC's main site. institution, biomaterial supply resource, algae, culture collection is listed by: GRBio
is related to: GRBio
Public, Pay for resource, The community can contribute to this resource http://grbio.org/institution/culture-collection-algae-university-cologne SCR_013772 2026-08-08 12:00:02 0
Central College of Bangalore
 
Resource Report
Resource Website
1+ mentions
Central College of Bangalore (RRID:SCR_013774) BU information resource An institution located in Bangalore focused on higher education. The university has established Gandhi Bhavan, Dr. B.R. Ambedkar Study and Research Centre, and Centre for Study of Social Exclusion and Inclusive policy as well as schools of biological sciences, social sciences, and business studies. institution, higher education is listed by: GRBio Public http://grbio.org/institution/central-college-bangalore SCR_013774 Bangalore University 2026-08-08 12:00:25 1
Immune Tolerance Network TrialShare
 
Resource Report
Resource Website
10+ mentions
Immune Tolerance Network TrialShare (RRID:SCR_013699) ITN TrialShare, TrialShare data or information resource, service resource, clinical trial, storage service resource, data repository Immune tolerance data management and visualization portal for studies sponsored by Immune Tolerance Network (ITN) and collaborating investigators. Data from published studies are accessible to any user; data from current in-progress studies are accessible to study investigators and collaborators. Includes links to published Figures, tools for visualization and analysis of data, and ability to query study data by subject, group, or any other study parameter. clinical trial, clinical data, biological specimens, is recommended by: National Library of Medicine
is related to: Immune Tolerance Network (ITN)
Type 1 diabetes, Diabetes, Allergy, Asthma, Autoimmune disease, Transplantation, Immunological disorder NIAID Restricted https://www.itntrialshare.org/login/home/login.view?returnUrl=%2Fproject%2Fhome%2Fstart.view%3F SCR_013699 , ITN, TrialShare, Trial Share, Immune Tolerance Network 2026-08-08 12:00:15 29
USAspending.gov
 
Resource Report
Resource Website
USAspending.gov (RRID:SCR_013738) Database of resources receiving federal financial assistance of more than $25,000. The Federal Funding Accountability and Transparency Act of 2006 was mandated to provide the public access to information regarding organizations and other entities receiving federal funding. Federal funding, federal contract, federal loan, federal grant, US spending U.S. Government Free, Public SCR_013738 2026-08-08 12:00:15 0
Beijing Natural History Museum
 
Resource Report
Resource Website
Beijing Natural History Museum (RRID:SCR_013744) institution A museum whose three main focuses are its specimen collection, academic research, and the popularization paleontology, zoology, botany, and anthropology. Beijing, Museum of Natural History, specimen collection, academic research, paleontology, zoology, botany, anthropology http://grbio.org/institution/beijing-natural-history-museum-3 SCR_013744 Beijing Museum of Natural History, BNHM 2026-08-08 12:00:16 0
Spatio-temporal transcriptome of the human brain
 
Resource Report
Resource Website
Spatio-temporal transcriptome of the human brain (RRID:SCR_013743) document, data or information resource, narrative resource A research paper with supplementary materials reporting the generation and analysis of exon-level transcriptome and associated genotyping data. The experiment represented both males and females of multiple ethnicities and examines gene regulation and expression in different areas of the brain. A data set on the human brain transcriptome as well as insights into the transcriptional foundations of human neurodevelopment is provided. spatio-temporal, transcriptome data, brain regions, human brain, gene expression, gene regulation is related to: Human Brain Transcriptome
has parent organization: Yale University; Connecticut; USA
Kavil Foundation ;
NARSAD ;
James S. McDonnell Foundation Scholar Award ;
NIMH MH081896;
NIMH MH089929;
NINDS NS054273
PMID:22031440 Public, Free SCR_013743 2026-08-08 12:00:01 0
WinMDI Software
 
Resource Report
Resource Website
10+ mentions
WinMDI Software (RRID:SCR_013745) Software to analyze flow cytometry listmode data files. flow cytometry, analysis http://facs.scripps.edu/software.html SCR_013745 Windows Multiple Document Interface software, Windows Multiple Document Interface for Flow Cytometry 2026-08-08 12:00:25 28
Biotechnology Culture Collection Institution Pusat Penelitian dan Pengembangan Bioteknologi-LIPI
 
Resource Report
Resource Website
1+ mentions
Biotechnology Culture Collection Institution Pusat Penelitian dan Pengembangan Bioteknologi-LIPI (RRID:SCR_013748) institution An institutional resource focusing on research in biotechnology. Their goals include becoming a reliable reference in the biotechnological field and improving the performance and professionalism of research institutes. Indonesia, biotechnology http://grbio.org/institution/biotechnology-culture-collection-institution-pusat-penelitian-dan-pengembangan SCR_013748 Biotechnology Culture Collection Institution, Pusat Penelitian dan Pengembangan Bioteknologi-LIPI 2026-08-08 12:00:16 1
Bombay Natural History Museum
 
Resource Report
Resource Website
Bombay Natural History Museum (RRID:SCR_013747) BNHS institution A non-governmental wildlife research institution involved in the conservation of nature, primarily biological diversity and threatened species through action based on research, education and public awareness. Contains publications, collections, and educational materials as well as information on current research. conservation, Bombay, Mumbai, education, research, natural history Wikidata: Q2909651, grid.452221.2, ISNI: 0000 0004 0502 0676 https://ror.org/059hk6n77 SCR_013747 Bombay Natural History Society 2026-08-08 12:00:01 0
University of South Florida Center for Biological Defense
 
Resource Report
Resource Website
University of South Florida Center for Biological Defense (RRID:SCR_013749) USF CBD An institutional resource focusing on biological defense and infectious disease research. The institution teaches preparation and response to catastrophes, especially bioterrorism preparedness, to local communities and conducts research in detecting and fighting biological agents and infectious diseases. biological defense, biodefense, biological threat detection, public health, infectious diseases, research has parent organization: University of South Florida; Florida; USA SCR_013749 USF Center for Biological Defense 2026-08-08 12:00:25 0
DH Writer
 
Resource Report
Resource Website
DH Writer (RRID:SCR_013753) software resource Software tool for reformatting abstracts from original submission formats into a text encoding format for publishing on-line and book abstracts. TEI, abstracts, web interface is related to: Digital Resource Tools
has parent organization: Ecole Polytechnique Federale de Lausanne; Lausanne; Switzerland
Free, Public SCR_013753 2026-08-08 12:00:01 0
Free Statistical Software
 
Resource Report
Resource Website
1+ mentions
Free Statistical Software (RRID:SCR_013834) software resource A software registry which offers links to various free statistical software programs for stand-alone computing. The software programs are split into different categories: General Packages, Subset Packages, Curve Fitting and Modeling, Biostatistics and Epidemiology, Surveys, Testing and Measurement, Excel Spreadsheets and Add-ins, Programming Languages and Subroutine Libraries, Scripts and Macros, Miscellaneous, and Other Collections. registry, stand alone computing, statistical software is listed by: Educational Resources in Neuroscience
is related to: Educational Resources in Neuroscience
Free, Public SCR_013834 2026-08-08 12:00:03 3
Collage Authoring Environment
 
Resource Report
Resource Website
1+ mentions
Collage Authoring Environment (RRID:SCR_014008) web application, software resource A web application which provides the framework for collaborative preparation and publication of computational experiments that can back executable papers. The Collage environment enables researchers to embed chunks of executable code and data into scientific publications and facilitate repeated execution of such codes on underlying computing and data storage resources. Executable papers made with Collage can be embedded into a web site. web applicaiton, computational experiment, executable paper, collaboration, publication is listed by: Connected Researchers
is related to: Article of the Future
is related to: Connected Researchers
has parent organization: Elsevier
Account required SCR_014008 Collage Authoring Environment for Executable Publications 2026-08-08 12:00:03 2
RunMyCode
 
Resource Report
Resource Website
1+ mentions
RunMyCode (RRID:SCR_014011) database, data or information resource, storage service resource, service resource A database and storage service resource which allows users to create, view, share, and download information from companion websites. RunMyCode allows users to create companion websites for their scientific publications. Users can share and download computer code and data from companion websites made with RunMyCode. Any software and data format is compatible with RunMyCode. database, storage service resource, companion website, code is listed by: Connected Researchers
is related to: Exec&Share
is related to: Exec&Share
is related to: Connected Researchers
Alfred P. Sloan Foundation ;
HEC Paris ;
National Center for Scientific Research ;
University of Orleans ;
COlumbia University
Free, Public, The community can contribute to this resource r3d100010418 SCR_014011 2026-08-08 12:00:03 4
Academic Karma
 
Resource Report
Resource Website
1+ mentions
Academic Karma (RRID:SCR_014017) production service resource, service resource A peer review management system which encourages timely and high quality peer review by using a credit system. Reviewers complete reviews using a general webform on academickarma.org, and if that review is submited to an editor within ten days, the reviewer is awarded a certain amount of points (karma credits). The author and editor both receive the review. Editors can use Academic Karma to identify specialized reviewers for future reference. A reviewer's personal profile, which includes the amount of karma credits they've received, is connected to their ORCID account and publication record for an overview of the reviewer's work. peer review, peer review management, service resource, prodution service resource uses: ORCID - Open Researcher and Contributor ID
is listed by: Connected Researchers
is related to: Connected Researchers
is related to: ORCID - Open Researcher and Contributor ID
Free, Available to the research community SCR_014017 2026-08-08 12:00:18 1
JournalReviewer
 
Resource Report
Resource Website
1+ mentions
JournalReviewer (RRID:SCR_014014) database, data or information resource, software resource, collaboration tool A database which allows researchers to view and comment on the logistics of scientific journals' review processes. JournalReviewer collects and aggregates feedback from users who have submitted manuscripts to journals in order to provide information for others considering journal submissions. Statistics such as turnaround rate, review length and quality, journal recommendations, and desk reject plausabilities are compiled from commentors' ratings. database, review, journal review, review logistics, collaboration tool is listed by: Connected Researchers
is related to: Connected Researchers
Free, Public, The community can contribute to this resource SCR_014014 2026-08-08 12:00:26 1
Journalysis
 
Resource Report
Resource Website
Journalysis (RRID:SCR_014015) database, data or information resource, software resource, collaboration tool A database where researchers can read and post reviews of publishing experiences with scientific journals. When writing comments, reviewers are adivsed to provide facts where possible, be specific, be honest, check the review, and offer constructive criticism when writing a negative report. Journalysis collates submitted reviews and data for each journal and provides useful summary information (metrics). Authors wanting to find out more about specific journals can search its databases and find the best journal for their next manuscript submission. Journals can use these reviews and metrics to demonstrate high publishing standards, or to improve standards where reviews may be negative. database, review, journal review, review logistics, collaboration tool is listed by: Connected Researchers
is related to: Connected Researchers
Free, Public, The community can contribute to this resource SCR_014015 2026-08-08 12:00:27 0
CMIND PY
 
Resource Report
Resource Website
CMIND PY (RRID:SCR_014097) software toolkit, image analysis software, software resource, software application, data processing software A python toolbox for analysis of MRI images. It relies on calls to a number of widely tested algorithms from the FMRIB software library (FSL) and the advanced normalization tools (ANTS) to provide analysis of simultaneously acquired ASL/BOLD fMRI data. It was developed for analyzing the datasets collected as part of the Cincinnati MR Imaging of NeuroDevelopment (C-MIND) project. python, toolbox, software toolkit, image analysis software, mri uses: FSL
uses: ANTS - Advanced Normalization ToolS
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
Public https://research.cchmc.org/c-mind-db/py-doc/html/ SCR_014097 CMIND-PY 2026-08-08 12:00:27 0
Useful Science
 
Resource Report
Resource Website
Useful Science (RRID:SCR_013968) data or information resource, knowledge environment, catalog, database, portal A collection of concise summaries of scientific articles that link back to the physical article. Users can contribute resources to the site and may choose to provide a summary; if they do not, Useful Science will do so. Summaries are then tagged with the appropriate topic. Topics that relate to everday life such as health, fitness, nutrition, and sleep are the main focus of the site. catalog, knowledge environment resource, summary, layman, lay person is listed by: Connected Researchers
is related to: Connected Researchers
Free, Public, The community can contribute to the resource SCR_013968 2026-08-08 12:00:04 0

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