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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
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METAGENOTE Resource Report Resource Website 1+ mentions |
METAGENOTE (RRID:SCR_018494) | data access protocol, software resource, web service | Quick and intuitive way to annotate data from genomics studies including microbiome. Project to aid researchers in applying standardized metadata describing what, where, how, and when of samples collected in genomics study. Collection of METAdata of GEnomics studies on web based NOTEbook. Metadata are stored in centralized repository and validated according to guidelines from Genomics Standard Consortium, which are also supported by repositories and large microbiome initiatives such as NCBI, European Bioinformatics Institute (EBI), and Earth Microbiome Project. Upon request from researchers, data will also be submitted for publication via NCBI Sequence Read Archive (SRA) repository. | Annotate data, genomics study, microbiome, metadata, genomics, data |
is related to: NCBI Sequence Read Archive (SRA) is related to: NCBI |
NIH | Free, Freely available | SCR_018494 | SciCrunch Registry | METAdata of GEnomics studies on a web based NOTEbook | 2026-10-31 12:18:42 | 1 | ||||||||
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MetabolomeExpress Resource Report Resource Website 10+ mentions |
MetabolomeExpress (RRID:SCR_014670) | Mx | data or information resource, database | A metabolomics database which contains GC/MS metabolomics datasets. General users can search a curated annotated metabolite database, a metabolite response statistics database, experimental datasets, and uncurated repositories. Registered users can use Metabolome Express for data processing and management. | metabolomics, database, metabolite, data processing, data management, repository, data set | is listed by: Metabolomics Workbench | Free for non commercial purposes, Available to the metabolomics community, Free registration for the metabolomics community | SCR_014670 | SciCrunch Registry | metabolomexpress.org, Metabolome Express (Mx) | 2026-10-31 12:20:46 | 16 | ||||||||
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Visiome Platform Resource Report Resource Website 1+ mentions |
Visiome Platform (RRID:SCR_003049) | Visiome | data or information resource, data repository, database, image collection, service resource, software repository, software resource, storage service resource, video resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 4, 2023.Analytical tools. Archive files may be written in any format and may include explanatory figures, program sources, readme files, and other related files. The readme file describes the purpose and usage of the archive file. This data sharing framework allows users to improve the reproducibility of simulations. Users can browse the platform contents via branch sites (A catalogue of illusions, Visitope), which introduce user friendly view of items such as basic images and original artworks of visual illusions with high resolution. The items in Visiome Platform are useful not only for reproducing the published results, but also for advancing and expanding the research in Vision Science. | eye, fft, binocular, circadian, color perception, color transparency, compound, cone, hodgkin-huxley model, illusion, insect vision, matlab, monocular, mst model, multichannel recording, neocognition, neuroinformatics, phase, photoreceptor, psychlops, retina, retinal, rod, spatial frequency, spectrum, traub model, turtle, v1, visual system, vision, simulation, stimulus, data, model, book, url, binder, presentation, paper, tool, data sharing |
is used by: NIF Data Federation is related to: Integrated Software is related to: Integrated Manually Extracted Annotation has parent organization: INCF Japan Node has parent organization: RIKEN Brain Science Institute |
PMID:14622885 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-00048 | SCR_003049 | SciCrunch Registry | 2026-10-31 12:13:16 | 1 | |||||||
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BioBank Central Resource Report Resource Website |
BioBank Central (RRID:SCR_008645) | BioBank Central | biospecimen repository, material storage repository, service resource, storage service resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented on March 27, 2013. Web-based portal to connect all the constituencies in the global biobank community. The project seeks to increase the transparency and accessibility of the scientific research process by connecting researchers with an additional source of funding - microinvestments received from the broader online community. In exchange for these public investments, researchers will maintain research logs detailing the play-by-play progress made in their project, as well as publishing all of their data in a public database under a science commons license. These research projects, in turn, will serve to continually update a research-based neuroscience-based human brain & body curriculum. Biobanks are the meeting point of two major information trends in biomedical research: the generation of huge amounts of genomic and other laboratory data, and the electronic capture and integration of patient clinical records. They are comprised of large numbers of human biospecimens supplemented with clinical data. Biobanks when implemented effectively can harness the power of both genomic and clinical data and serve as a critical bridge between basic and applied research, linking laboratory to patient and getting to cures faster. As science and technology leaders work to address the many challenges facing U.S. biobanks logistical, technical, ethical, financial, intellectual property, and IT BioBank Central will serve as an accurate and timely source of knowledge and news about biorepositories and their role in research and drug development. The Web site also provides a working group venue, patient and public education programs, and a forum for international collaboration and harmonization of best practices. | biobank, community, biomedical, data, genomic, integration, patient, clinical, human, biospecimen, science, technology, biorepository, drug, development, education | has parent organization: Open Source Science Project | FasterCures ; Feinstein Kean Healthcare ; IBM Healthcare and Life Sciences ; Affymetrix ; Bioaccelerate Holdings Inc. ; Invitrogen Corporation |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-32933 | SCR_008645 | SciCrunch Registry | 2026-10-31 12:14:54 | 0 | |||||||
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Redivis Resource Report Resource Website 10+ mentions |
Redivis (RRID:SCR_023111) | Redivis | data repository, service resource, software repository, software resource, storage service resource | Commercial collaborative research platform for hosting and analyzing datasets.Data platform for academic research. Redivis provides organizations with central hub where researchers can easily discover, access, and analyze their data. | Data platform, central hub, discover, access, analyze, data, academic research, hosting datasets, analyzing datasets | is related to: DataCite | Restricted | r3d100014398, 10.57761, SCR_024550 | https://search.datacite.org/repositories/sul.swbvyu, https://doi.org/10.57761/, https://dx.doi.org/10.57761, https://doi.org/10.17616/R31NJNLQ | SCR_023111 | SciCrunch Registry | Red Vis | 2026-10-31 12:18:46 | 14 | ||||||
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4TU.ResearchData Resource Report Resource Website |
4TU.ResearchData (RRID:SCR_023125) | data repository, service resource, storage service resource | International data repository for science, engineering and design. Services include curation, sharing, long-term access and preservation of research datasets. These services are available to anyone around the world. In addition, 4TU.ResearchData also offers training and resources to researchers to support them in making research data findable, accessible, interoperable and reproducible (FAIR). | International data repository, science data, engineering data, design data, |
is listed by: DataCite is listed by: FAIRsharing is listed by: re3data.org |
Free, Freely available | DOI:10.4121, DOI:10.17616/R3VG6N, DOI:10.25504/FAIRsharing.zcveaz | https://doi.org/10.4121, https://dx.doi.org/10.4121, http://doi.org/10.17616/R3VG6N, https://fairsharing.org/10.25504/FAIRsharing.zcveaz | SCR_023125 | SciCrunch Registry | 4TU.ResearchData | 2026-10-31 12:18:49 | 0 | |||||||
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Core Trust Seal Resource Report Resource Website 10+ mentions |
Core Trust Seal (RRID:SCR_021679) | nonprofit organization | International, community based, nongovernmental, and nonprofit organization promoting sustainable and trustworthy data infrastructures governed by Standards and Certification Board. Offers to any data repository core level certification based on tDSA–WDS Core Trustworthy Data Repositories Requirements catalogue and procedures. CoreTrustSeal Data Repository certification replaces the DSA certification and WDS Regular Members certification. | Data repository certification, core level certification, data infrastructures | SCR_021679 | SciCrunch Registry | CoreTrustSeal | 2026-10-31 12:18:18 | 14 | |||||||||||
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bioCADDIE Resource Report Resource Website 1+ mentions |
bioCADDIE (RRID:SCR_004018) | bioCADDIE | data or information resource, portal | Project to facilitate the construction of a Data Discovery Index. The data discovery index (DDI) is to do for data what PubMed (and PubMed Central) did for the literature. Biomedical researchers and healthcare institutions should be enabled to share their data in a way that advances science and protects privacy. They will find ways to facilitate structuring, discovery, and accessing of data without requiring people to understand complex standards that only a few specialized groups can decipher. bioCADDIE will pursue the following aims: # Provide ease in finding accessible data of interest according to disease, data modality (e.g., imaging, molecular measurements), and/or demographics through simple and intuitive computer interfaces that allow quick ranking, visualization, and summarization of data resources - this requires methods for automated indexing (i.e., creation of metadata), tools that allow free text searches, accessibility tools that decode consent requirements, etc. # Assist data producers on how to publish data for maximal discoverability and assessment of impact of disseminated data through data citation networks; and # Train data producers and data users in relevant tools related to biomedical data sharing. This will be done through online resources, workshops, and dissemination of best practices through publication of articles about data discovery in different venues (a) scholarly publications, and (b) lay press news articles. | biomedical, healthcare, catalog, data sharing, data repository, data set | has parent organization: University of California at San Diego; California; USA | nlx_158438 | SCR_004018 | SciCrunch Registry | biomedical and healthCAre Data Discovery and Indexing Ecosystem, UCSD bioCADDIE | 2026-10-31 12:19:08 | 9 | ||||||||
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ISMRMRD Resource Report Resource Website |
ISMRMRD (RRID:SCR_024043) | software library, software resource, software toolkit | Prerequisite for sharing magnetic resonance imaging reconstruction algorithms and code is a common raw data format. This repository describes such common raw data format, which attempts to capture the data fields that are required to describe the magnetic resonance experiment with enough detail to reconstruct images. The repository also contains a C/C++ library for working with the format. | ISMRM Raw data format, C/C++ library for working with the format, | is listed by: Debian | PMID:26822475 | Free, Available for download, Freely available, | https://sources.debian.org/src/ismrmrd/ | SCR_024043 | SciCrunch Registry | ismrmrd, ISMRM Raw Data Format | 2026-10-31 12:19:33 | 0 | |||||||
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DuraSpace Resource Report Resource Website |
DuraSpace (RRID:SCR_005866) | DuraSpace | data or information resource, organization portal, portal | DuraSpace sustains and grows its flagship repository platforms--Fedora and DSpace--while expanding into new technologies. DuraSpace is the independent 501(c)(3) not-for-profit born from a vision to help save our shared scholarly, scientific and cultural record. We are dedicated to sustaining and improving Fedora and DSpace, two of the most dominant open source repository solutions. We continue to lead the development and improvement of open technologies that provide long-term, durable access to your digital assets. Our new technology, DuraCloud, will exploit digital preservation support services in the cloud. We are also expanding into new areas that include exploring strategies on how to manage the ''data deluge'' and addressing the challenge of converting the overwhelming amount of data produced by scholars and scientists into useful information. DuraSpace is committed to providing leadership and innovation in the development and deployment of open technologies that promote durable, persistent access to digital data. We collaborate with academic, scientific, cultural, and technology communities in creating practical solutions to help ensure that current and future generations have access to our collective digital heritage. Our values are expressed in our organizational byline, open technologies for durable digital content. | repository, digital | is parent organization of: DSpace | Open unspecified license - Licensed under Creative Commons Attribution-Share Alike v3 Unported License | nlx_149406 | SCR_005866 | SciCrunch Registry | 2026-10-31 12:19:10 | 0 | ||||||||
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cRAP protein sequences Resource Report Resource Website 100+ mentions |
cRAP protein sequences (RRID:SCR_018187) | cRAP | data or information resource, data repository, database, service resource, storage service resource | List of proteins commonly found in proteomics experiments that are present either by accident or through unavoidable contamination of protein samples. List is based on analysis of current version of GPMDB, as well as suggestions by users. Current version of cRAP in FASTA format can be obtained from the GPM FTP site. | Protein, collection, proteomic experiment, protein sample, contamination, Global Proteome Machine Data Base, data repository, data, FASEB list | THIS RESOURCE IS NO LONGER IN SERVICE | ftp://ftp.thegpm.org/fasta/cRAP | SCR_018187 | SciCrunch Registry | common Repository of Adventitious Proteins | 2026-10-31 12:18:35 | 198 | ||||||||
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Science of Behavior Change Research Network Resource Report Resource Website 1+ mentions |
Science of Behavior Change Research Network (RRID:SCR_017385) | SOBC | data or information resource, portal, project portal | Repository for behavioral science measures that have been validated or are in process of being validated in accordance with SOBC Experimental Medicine Approach. | Data, behavioral, science, SOBC, measure, data, medicine | NIH | SCR_017388 | https://scienceofbehaviorchange.org/measures/, https://scienceofbehaviorchange.org/measures/ | SCR_017385 | SciCrunch Registry | SOBC Measures Repository, Science of Behavior Change (SOBC) Research Network | 2026-10-31 12:19:22 | 1 | |||||||
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eBIRT Resource Report Resource Website 1+ mentions |
eBIRT (RRID:SCR_004172) | eBIRT | data or information resource, database, portal | Venue for research resource discovery offering resource providers a platform to advertise their services and products, as well as investigators a means to locate services for their use. Search results may be refined by resource type, research area or institution. | resource repository, service repository, service database, resource database |
is related to: Clinical and Translational Science Awards Consortium has parent organization: Emory University; Georgia; USA |
NCRR | Public | nlx_143600 | SCR_004172 | SciCrunch Registry | eBIRT - Biomedical Interactive Resource Tool, Electronic Biomedical Interactive Resource Tool | 2026-10-31 12:19:08 | 1 | ||||||
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NCBI Virus Resource Report Resource Website 50+ mentions |
NCBI Virus (RRID:SCR_018253) | data access protocol, data or information resource, portal, software resource, topical portal, web service | Community portal for viral sequence data from RefSeq, GenBank and other NCBI repositories. Integrative, value added resource designed to support retrieval, display and analysis of curated collection of virus sequences and large sequence datasets. Used to increase usability of data archived in GenBank and other NCBI repositories. | Viral sequence data, viral data retrival, viral data analysis, viral data display, curated virus sequence, data set |
is related to: RefSeq is related to: GenBank |
PMID:27899678 | Free, Freely available | SCR_018253 | SciCrunch Registry | National Center for Biotechnology Information Virus | 2026-10-31 12:18:34 | 76 | ||||||||
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OpenNeuro Resource Report Resource Website 100+ mentions |
OpenNeuro (RRID:SCR_005031) | OpenNeuro, OpenfMRI | data or information resource, data repository, database, image repository, service resource, storage service resource | Open platform for analyzing and sharing neuroimaging data from human brain imaging research studies. Brain Imaging Data Structure ( BIDS) compliant database. Formerly known as OpenfMRI. Data archives to hold magnetic resonance imaging data. Platform for sharing MRI, MEG, EEG, iEEG, and ECoG data. | neuroinformatics, database, storing, dataset, neuroimaging, data, MRI, MEG, EEG, iEEG, ECoG, FASEB list |
uses: Brain Imaging Data Structure (BIDs) uses: HED Tags is used by: studyforrest.org is used by: DataLad is used by: NIF Data Federation is used by: Integrated Datasets is used by: NIH Heal Project is used by: Baby Open Brains is recommended by: National Library of Medicine is recommended by: BRAIN Initiative is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: re3data.org is listed by: DataCite is listed by: FAIRsharing is affiliated with: NEMAR is related to: Integrated Manually Extracted Annotation has parent organization: Stanford University; Stanford; California has parent organization: Stanford Center for Reproducible Neuroscience has parent organization: BRAIN Initiative is provided by: OpenNeuro |
BRAIN Initiative ; Laura and John Arnold Foundation ; NIDA ; NIMH ; NSF OCI1131441; Squishymedia ; Stanford |
Free, Freely available | DOI:10.25504/FAIRsharing.s1r9bw, r3d100010924, nlx_144048, DOI:10.17616/R33047, DOI:10.18112 | http://www.nitrc.org/projects/openfmri, https://github.com/OpenNeuroDatasets, https://doi.org/10.17616/R33047, https://doi.org/10.17616/r33047, https://doi.org/10.18112/, https://dx.doi.org/10.18112/, https://fairsharing.org/10.25504/FAIRsharing.s1r9bw, https://doi.org/10.17616/R33047 | http://openfmri.org | SCR_005031 | SciCrunch Registry | OpenfMRI, Open fMRI, OpenNeuro | 2026-10-31 12:13:55 | 310 | ||||
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iTools Resource Report Resource Website 50+ mentions |
iTools (RRID:SCR_009626) | iTools | data access protocol, data or information resource, data repository, database, service resource, software repository, software resource, storage service resource, web service | An infrastructure for managing of diverse computational biology resources - data, software tools and web-services. The iTools design, implementation and meta-data content reflect the broad NCBC needs and expertise (www.NCBCs.org). | computational neuroscience, data, experiment control, hardware, imaging genomics, information specification, java, loni pipeline, model, ontology, os independent, metadata |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: National Centers for Biomedical Computing has parent organization: Laboratory of Neuro Imaging |
NIH Roadmap for Medical Research ; NCRR U54-RR021813; NIDA U54-DA021519; NCI U54-CA121852; NHGRI U54-HG004028; NIGMS U54-GM072970; NIBIB U54-EB005149; NLM U54-LM008748 |
PMID:18509477 | GNU Lesser General Public License | nlx_155852 | http://www.nitrc.org/projects/itools, http://www.loni.usc.edu/research/software | http://itools.loni.ucla.edu/ | SCR_009626 | SciCrunch Registry | ITools Resourceome, NCBC iTools | 2026-10-31 12:15:04 | 53 | |||
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Databrary Resource Report Resource Website 10+ mentions |
Databrary (RRID:SCR_010471) | Databrary | data or information resource, data repository, database, portal, project portal, service resource, software repository, software resource, storage service resource | Project aims to promote data sharing, archiving, and reuse among researchers who study human development. Focuses on creating tools for scientists to store, manage, preserve, analyze and share video and related data. | behavior, development, data, sharing, audio track, video |
is listed by: re3data.org is related to: Datavyu is related to: Datavyu has parent organization: New York University; New York; USA has parent organization: Pennsylvania State University |
NICHD U01 HD076595; NSF BCS-1238599 |
Restricted | nlx_157733, r3d100011023 | https://github.com/databrary | SCR_010471 | SciCrunch Registry | 2026-10-31 12:15:05 | 17 | ||||||
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China National Center for Bioinformation Genome Sequence Archive for Human database Resource Report Resource Website 500+ mentions |
China National Center for Bioinformation Genome Sequence Archive for Human database (RRID:SCR_027207) | data or information resource, database | Data repository for archiving raw sequence data, which provides data storage and sharing services for worldwide scientific communities. Data repository specialized for human genetic related data derived from biomedical researches. | archiving raw sequence data, data storage and sharing services, | PMID:39530327 PMID:34400360 |
Restricted | SCR_027207 | SciCrunch Registry | , Genome Sequence Archive for Human database, Genome Sequence Archive for Human (GSA-Human) | 2026-10-31 12:24:25 | 544 | |||||||||
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National Center for Earth-Surface Dynamics Resource Report Resource Website |
National Center for Earth-Surface Dynamics (RRID:SCR_002195) | NCED | data or information resource, data repository, database, service resource, storage service resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 23,2022. Field, laboratory, and model data related to earth-surface dynamics created or compiled by NCED-funded scientists. NCED is a Science and Technology Center developed to predict the coupled dynamics and co-evolution of landscapes and their ecosystems in order to transform management and restoration of the Earth-surface environment. | landscape, ecosystem, data set |
is listed by: CINERGI has parent organization: University of Minnesota Twin Cities; Minnesota; USA |
NSF | Free, Freely available | r3d100011295, nlx_154715 | https://doi.org/10.17616/R3XW6D | SCR_002195 | SciCrunch Registry | NCED Data Repository | 2026-10-31 12:13:02 | 0 | |||||
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iDASH Resource Report Resource Website 1+ mentions |
iDASH (RRID:SCR_003524) | iDASH | data or information resource, organization portal, portal | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 6, 2023. National Center for Biomedical Computing (NCBC) that develops new algorithms, opensource tools, computational infrastructure, and services for biomedical and behavioral researchers nationwide to promote the secure sharing and consuming of biomedical and behavioral resources (software, data, and computing systems) with iDASH collaborators. The center addresses fundamental challenges to research progress by providing a secure, privacypreserving environment in which researchers can analyze genomic, transcriptomic, clinical, behavioral, and social data relevant to health. Three driving biological projects in iDASH (Molecular Phenotyping of Kawasaki Disease, Post-Marketing Surveillance of Hematologic Medications, and Individualized Intervention to Enhance Physical Activity) span the molecular-individualpopulation spectrum, and they will motivate, inform, and support tool development. iDASH will collaborate with other NCBCs and will disseminate tools via annual workshops, presentations at major conferences, and scientific publications. | data sharing, computing, biomedical, behavior, molecular, phenotyping, kawasaki disease, hematologic medication, individualized intervention, physical activity, phenotype, data set, image, cyberinfrastructure, schema, domain model, algorithm, bio.tools |
is listed by: bio.tools is listed by: Debian is listed by: DataCite is related to: National Centers for Biomedical Computing is related to: NIH Data Sharing Repositories is related to: National Centers for Biomedical Computing has parent organization: University of California at San Diego; California; USA has parent organization: University of California; California; USA |
NIH Roadmap for Bioinformatics and Computational Biology ; NHLBI U54 HL108460 |
PMID:22081224 | THIS RESOURCE IS NO LONGER IN SERVICE | https://api.datacite.org/dois?prefix=10.15147, biotools:iDASH, nif-0000-38239 | https://bio.tools/iDASH | SCR_003524 | SciCrunch Registry | iDASH Repository, Integrating Data for Analysis Anonymization and SHaring | 2026-10-31 12:19:08 | 2 |
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