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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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bNAber Resource Report Resource Website 1+ mentions |
bNAber (RRID:SCR_010510) | bNAber | database, data or information resource | bNAber is the Broadly Neutralizing Antibody E-Resource Database, analysis, visualization, and data discovery tool for broadly neutralizing HIV-1 antibodies (bNAbs). bNAber seeks to be a vital tool in the search for an AIDS vaccine. | sanford burnham medical research institute, hiv, aids | is related to: CHAVI-ID | HIV, AIDS | NIAID UM1AI100663; NIGMS R01GM101457 |
nlx_158732 | SCR_010510 | 2026-08-08 12:04:26 | 7 | |||||||
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HOL Resource Report Resource Website 10+ mentions |
HOL (RRID:SCR_010237) | HOL | database, data or information resource | An online database mainly about the order Hymenoptera. It contains some 115,000 species and literally millions of specimens in collections around the world. Some parts of this database have extensive information available (e.g., Proctotrupoidea, Platygastroidea, Ceraphronoidea, Apoidea), even to the level of specimens (see Platygastridae, Pelecinidae, Monomachidae, Stephanidae). These data have been gathered with the collaboration of a number of colleagues. Other taxa still need work. Hymenoptera Online (HOL) is no longer solely dedicated to Hymenoptera as recent acquisitions have expanded the taxonomic scope of this resource to include Hemiptera, Coleoptera, Mites, Fishes, and others with the help of a number of tireless collaborators. If you would like to contribute to the further development and enhancement of this resource or need technical assistance related to Hymenoptera Online services, please contact HOL Help, Norman F. Johnson, or the HOL Google+ Page. Search for taxa, collections, authors, collectors and specimens by typing your simple query in the text box below. Taxon name searches are case-sensitive and a wildcard (%) will automatically be appended to the end of your query (e.g. Telenomus); the same applies to collectors and authors (e.g. Johnson), collections (e.g. CNC), places (e.g. Bahia), journals (e.g. Memoirs), and specimen searches by specimen ID (e.g. ANIC DB 32). | has parent organization: Ohio State University; Ohio; USA | nlx_156856 | https://mbd-db.osu.edu/hol/taxon_name/323e0d14-2fa1-4b42-98cf-f4f422668e24?filters%5Bfilter_options%5D%5B%5D=56410721-bba5-4281-90fd-d273d4dd281e | SCR_010237 | Hymenoptera Online (HOL) | 2026-08-08 12:04:25 | 23 | ||||||||
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Access to Archival Databases Resource Report Resource Website |
Access to Archival Databases (RRID:SCR_010479) | AAD | database, data or information resource | Database of the U.S. National Archives and Records Administration that allows users to search by keyword or category. Specific topics in personal history, private sectors, places, wars or time periods can be chosen to help filter your research findings of the 85 million electronic records that have been made available. | political activists, social history, government information | is listed by: re3data.org | nlx_157752, r3d100000002 | SCR_010479 | Access to Archival Databases (AAD) | 2026-08-08 12:04:25 | 0 | ||||||||
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TarBase Resource Report Resource Website 500+ mentions |
TarBase (RRID:SCR_010841) | DIANA-TarBase | database, data or information resource, service resource | Manually curated database of experimentally supported animal microRNA targets. Collection of experimentally supported miRNA gene interactions. | mirna-gene interaction |
is listed by: OMICtools is provided by: DIANA Tools |
Fondation Santé Grant ; General Secretariat of Research and Technology ; Greece Grant ; Hellenic Foundation for Research and Innovation ; IKY Foundation |
PMID:22135297 PMID:29156006 |
Restricted | OMICS_00397 | http://carolina.imis.athena-innovation.gr/diana_tools/web/index.php?r=tarbasev8%2Findex/ | SCR_010841 | DIANA-TarBase v7.0, DIANA-TarBase v.8, DIANA-TarBase v.6 | 2026-08-08 12:04:21 | 869 | ||||
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OKCAM: Ontology-based Knowledgebase for Cell Adhesion Molecules Resource Report Resource Website |
OKCAM: Ontology-based Knowledgebase for Cell Adhesion Molecules (RRID:SCR_010696) | OKCAM | database, data or information resource, knowledgebase | OKCAM (Ontology-based Knowledgebase for Cell Adhesion Molecules) is an online resource for human genes known or predicted to be related to the processes of cell adhesion. These genes include members of the cadherin, immunoglobulin/FibronectinIII (IgFn), integrin, neurexin, neuroligin, and catenin families. Totally 496 human CAM genes were compiled and annotated. We have mapped these genes onto a novel cell adhesion molecule ontology (CAMO) that provides a hierarchical description of cell adhesion molecules and their functions. It is intended to provide a means to facilitate better and better understanding of the global and specific properties of CAMs through their genomic features, regulatory modes, expression patterns and disease associations become clearer. You may browse by CAM ontology, Chromosomes and Full Gene list. | cell adhesion molecule, gene, cell adhesion, molecule, cadherin, immunoglobulin, fibronectiniii, integrin, neurexin, neuroligin, catenin, chromosome |
has parent organization: Peking University; Beijing; China is parent organization of: CAMO - Cell Adhesion Molecule Ontology |
China Scholarship Council ; NCI P50CA/DA84718; NIDA P50CA/DA84718; China National High-tech 863 Programs 2006AA02A312; China National High-tech 863 Programs 2006AA02Z334; China National High-tech 973 Programs 2007CB946904 |
PMID:18790807 | nlx_81469 | SCR_010696 | OKCAM: Ontology-based Knowledgebase for Human Cell Adhesion Molecules | 2026-08-08 12:04:26 | 0 | ||||||
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SNPs3D Resource Report Resource Website 100+ mentions |
SNPs3D (RRID:SCR_010787) | SNPs3D | database, data or information resource | A website which assigns molecular functional effects of non-synonymous SNPs based on structure and sequence analysis. | single nucleotide polymorphism, single nucleotide variation, gene, FASEB list |
is listed by: OMICtools has parent organization: University of Maryland; Maryland; USA |
NLM | The community can contribute to this resource | OMICS_00163 | SCR_010787 | 2026-08-08 12:04:27 | 117 | |||||||
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Corn Fungal Resistance Associated Sequences Database Resource Report Resource Website |
Corn Fungal Resistance Associated Sequences Database (RRID:SCR_010644) | CFRAS-DB | database, data or information resource | A relational database with dynamic querying and data integration that can be used by researchers to identify genetic sequences with a high probability of being associated with aflatoxin accumulation resistance, according to multiple lines of evidence. CFRAS-DB integrates genomic, proteomic, and genetic data from multiple studies in maize dealing with aflatoxin accumulation or Aspergillus flavus resistance., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | has parent organization: Mississippi State University; Mississippi; USA | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_65361 | SCR_010644 | 2026-08-08 12:04:20 | 0 | |||||||||
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PlanTAPDB Resource Report Resource Website |
PlanTAPDB (RRID:SCR_010897) | PlanTAPDB | database, data or information resource | A phylogeny-based comprehensive database of plant transcription associated proteins. | is listed by: OMICtools | PMID:17337525 | Free | OMICS_00558 | SCR_010897 | 2026-08-08 12:04:28 | 0 | ||||||||
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Vaccine damage reports database Resource Report Resource Website |
Vaccine damage reports database (RRID:SCR_010740) | Vaccine damage reports database | database, data or information resource | Database of case reports of adverse reactions to vaccinations. There are 806 reports (May 2013). If you would like to report a case, please go to report your own vaccine reaction. The user may search by keywords or sort by vaccine, country, age, outcome, gender and hospital admission. | vaccine, adverse reaction, clinical, male, female, child, adult | Adverse reaction to vaccine, Aging | The community can contribute to this resource | nlx_97470 | SCR_010740 | Vaccine damages database, Adverse reaction/vaccine damage database | 2026-08-08 12:04:21 | 0 | |||||||
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Molecular Modeling DataBase Resource Report Resource Website 10+ mentions |
Molecular Modeling DataBase (RRID:SCR_010623) | MMDB | database, data or information resource | The Molecular Modeling DataBase (MMDB), also known as Entrez Structure, is a database of experimentally determined structures obtained from the RCSB Protein Data Bank (PDB). MMDB is developed by the Structure Group of the NCBI Computational Biology Branch. The data processing procedure at NCBI results in the addition of a number of useful features that facilitate computation on the data and link them to many other data types in the Entrez system. The structure database is considerably smaller than Entrez''s Protein or Nucleotide databases, but a large fraction of all known protein sequences have homologs in this set, and one may often learn more about a protein by examining 3-D structures of its homologs. These are accessible as Related Structures in the Links menu of Entrez Protein sequence records (illustrated example). It is then possible to align the query protein to the structure-based sequence, as shown in the illustration on this page. Additional resources can be used along with MMDB to interactively view the structures, find similar 3D structures, learn about the types of interactions and bound chemicals that have been found to exist among the similar 3D structures, and more. | macromolecule, structure, 3d spatial image, protein structure, gold standard |
is related to: NCBI Structure has parent organization: NCBI |
PMID:17135201 | nlx_56387 | http://www.ncbi.nlm.nih.gov/sites/entrez?db=structure, http://www.ncbi.nlm.nih.gov/structure | SCR_010623 | Entrez Structure, NCBI Structure, Structure database, Structure (Molecular Modeling Database) | 2026-08-08 12:04:27 | 16 | ||||||
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GeneDB Spombe Resource Report Resource Website |
GeneDB Spombe (RRID:SCR_010639) | GeneDB_Spombe, GeneDB Spombe, GeneDB S. pombe | database, data or information resource | THIS RESOURCE IS NO LONGER IN SERVICE documented June 6, 2013 Database of all S. pombe (fission yeast) known and predicted protein coding genes, pseudogenes, transposons, tRNAs, rRNAs, snRNAs, snoRNAs and other known and predicted non-coding RNAs. Curation of new and existing literature is ongoing and changes are incorporated weekly. User feedback is welcome. The genome of fission yeast (Schizosaccharomyces pombe), which contains the smallest number of protein-coding genes yet recorded for a eukaryote: 4,824, has been sequenced and annotated. The centromeres are between 35 and 110 kilobases (kb) and contain related repeats including a highly conserved 1.8-kb element. Regions upstream of genes are longer than in budding yeast (Saccharomyces cerevisiae), possibly reflecting more-extended control regions. Some 43% of the genes contain introns, of which there are 4,730. Fifty genes have significant similarity with human disease genes; half of these are cancer related. We identify highly conserved genes important for eukaryotic cell organization including those required for the cytoskeleton, compartmentation, cell-cycle control, proteolysis, protein phosphorylation and RNA splicing. These genes may have originated with the appearance of eukaryotic life. Few similarly conserved genes that are important for multicellular organization were identified, suggesting that the transition from prokaryotes to eukaryotes required more new genes than did the transition from unicellular to multicellular organization. | fission yeast |
is related to: PomBase has parent organization: GeneDB |
Wellcome Trust | PMID:11859360 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_62442 | SCR_010639 | Schizosaccharomyces pombe GeneDB, GDB S. pombe | 2026-08-08 12:04:26 | 0 | |||||
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DGIL Porcine Immunology and Nutrition Datebase Resource Report Resource Website 1+ mentions |
DGIL Porcine Immunology and Nutrition Datebase (RRID:SCR_012743) | database, data or information resource | Performs studies demonstrating the nutritional and biochemical effects of trace elements with special emphasis on chromium. Performs studies to elucidate the role of natural products in the improvement of the function of insulin with emphasis on polyphenols from tea and cinnamon. Performs studies on the role of dietary polyphenols on neuropathological changes including those associated with Alzheimers disease. The ultimate goal of the research is to prevent or alleviate early signs and symptoms of the metabolic syndrome which is important in the prevention of type 2 diabetes, cardiovascular, Alzheimers and related diseases. Our database is focused on immunologically-related genes classified under the following categories: Apoptosis CD markers Chemokines Chemokine receptors Cytokines Cytokine receptors Dendritic cell associated genes Type 1 IFN induced proteins Inflammation NFKB signaling pathway Toll receptor signaling pathway T cell activation TH1 cell development TH2 cell development Partners. Partnering with the Diet, Genomics, and Immunology Laboratory | has parent organization: U.S. Department of Agriculture | Type 2 diabetes, Diabetes, Cardiovasculat disease, Alzheimer's disease | nif-0000-30452 | SCR_012743 | PIN | 2026-08-08 12:04:29 | 8 | |||||||||
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FINDbase Worldwide Resource Report Resource Website 10+ mentions |
FINDbase Worldwide (RRID:SCR_012744) | database, data or information resource | FINDbase Worldwide is an online repository of information about the frequency of different mutations leading to inherited disorders in various populations around the globe. Frequency data about 32 disorders, 25 genes within 98 populations covering 1226 mutations is now available. 28 curators worldwide contributed to this database containing data from 37 submissions. | genetic disorder, human mutation, inherited disorder, mutation pathogenesis, bio.tools |
is listed by: bio.tools is listed by: Debian |
biotools:findbase, nif-0000-02838 | https://bio.tools/findbase | SCR_012744 | FINDbase | 2026-08-08 12:04:29 | 13 | ||||||||
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VIOLIN: Vaccine Investigation and Online Information Network Resource Report Resource Website 10+ mentions |
VIOLIN: Vaccine Investigation and Online Information Network (RRID:SCR_012749) | VIOLIN | database, data or information resource | A web-based central resource that integrates vaccine literature data mining, vaccine research data curation and storage, and curated vaccine data analysis for vaccines and vaccine candidates developed against various pathogens of high priority in public health and biological safety. The vaccine data includes research data from vaccine studies using humans, natural and laboratory animals.VIOLIN extracts and stores vaccine-related, peer-reviewed papers from PubMed. Several powerful literature searching and data mining programs have been developed. These include an advanced keywords search program, a natural languagae processing (NLP) based literature retrieval program, a MeSH-based literature browser, and a literature alert program. Registered users can subscribe to our email alert service and will be notified of any newly published vaccine papers in the areas of interest. These literature mining programs are designed to help the user and VIOLIN database curators to find efficiently needed vaccine articles and sentences within full-text articles that contain searched keywords or categories.A web-based literature mining and curation system (Limix) is available for registered users/curators to search, curate, and submit structured vaccine data into the VIOLIN database. The curated vaccine-related information contains many categories such as general pathogenesis, protective immunity, vaccine preparation and characteristics, host responses including vaccination protocol and efficacy against virulent pathogen infections. All data within the database is edited manually and is derived primarily from peer-reviewed publications. The curated data is stored in a relational database and can be queried using various VIOLIN search programs. Vaccine-related pathogen and host genes are annotated and available for searchs based on a customized BLAST program. All VIOLIN data are available for download into an XML-based data exchange format.VIOLIN is designed to be a vital source of vaccine information and will provide researchers in basic and clinical sciences with curated data and bioinformatics tools to facilitate understanding and development of vaccines to fight infectious diseases. Category: Other Molecular Biology Databases Subcategory: Drugs and drug design | immunology, infectious diseases, molecular biology, pathogen, public health, vaccine | has parent organization: University of Michigan; Ann Arbor; USA | NIAID U24 AI125008 | nif-0000-03629 | SCR_012749 | Violin 2.0, Vaccine Investigation and Online Information Network | 2026-08-08 12:04:30 | 27 | |||||||
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RegTransBase Resource Report Resource Website 1+ mentions |
RegTransBase (RRID:SCR_013047) | database, data or information resource | It consists of two modules - a database of regulatory interactions based on literature and an expertly curated database of transcription factor binding sites. The literature based information in RegTransBase is a manually curated database of regulatory interactions in prokaryotes, captures the knowledge in published scientific literature using a controlled vocabulary. RegTransBase describes a large number of regulatory interactions reported in many organisms and contains various types of experimental data, in particular: * the activation or repression of transcription by an identified direct regulator * determining the transcriptional regulatory function of a protein (or RNA) directly binding to DNA or RNA * mapping or prediction of binding sites for a regulatory protein * characterization of regulatory mutations The analysis section of RegtransBase is based on a set of manually curated alignments of transcription factor binding sites and allows you to search for new binding sites and verify conservation of bindings sites across multiple species through the use of web based analysis tools. | nif-0000-03398 | SCR_013047 | RegTransBase | 2026-08-08 12:04:24 | 6 | |||||||||||
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GABI-KAT Resource Report Resource Website 50+ mentions |
GABI-KAT (RRID:SCR_012751) | database, data or information resource | GABI-Kat is a database of flanking sequence tags (FSTs) from T-DNA mutagenised A. thaliana plants. Over time, an increasing number of lines will become available from NASC. The "show sequence" page of SimpleSearch will display if a GABI-Kat line for a given FST has already been donated to NASC. Lines that have so far not been regrown and confirmed are only available from GABI-Kat directly. We have used four vectors: pAC106 (GenBank:AJ537513), pAC161 (GenBank:AJ537514), pGABI1 (GenBank:AY529716) and pADIS1 (GenBank:AY529717). Sequence and overview map data of all vectors are available from the download page. Features of interest which are not included in the map should be deduced from the sequence. For a specified line, the vector is displayed in the "Show Sequence" page of SimpleSearch. | a. thaliana, a. thaliana genome, mutagen, plant genome, FASEB list | has parent organization: Bielefeld University; North Rhine-Westphalia; Germany | nif-0000-02865 | SCR_012751 | GABI-KAT | 2026-08-08 12:04:23 | 56 | |||||||||
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Comparative Fungal Genomics Platform Resource Report Resource Website 10+ mentions |
Comparative Fungal Genomics Platform (RRID:SCR_012910) | database, data or information resource |
The CFGP (Comparative Fungal Genomics Platform) was designed for comparative genomics projects with diverse fungal genomes. The CFGP provides important bioinformatic tools, such as BLAST search, ClustalW analysis, InterPro Scan, SignalP, and PSORT2, which are very common tools for the researchers in the field of genomics. Many of them have been executed in the unix environment, so some specific computing knowledge is required. In the CFGP, users can use these tools simply by clicking their mouse button. In addition, all of the results of the analysis will be stored in the CFGP, so you can easily share those results with other members. |
fungal genome, comparative genomics, genomics | has parent organization: Seoul National University; Seoul; South Korea | nif-0000-02653 | http://cfgp.snu.ac.kr | SCR_012910 | CFGP | 2026-08-08 12:04:24 | 23 | ||||||||
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CancerResource Resource Report Resource Website 1+ mentions |
CancerResource (RRID:SCR_011945) | database, data or information resource | Comprehensive database of cancer relevant proteins and compound interactions supported by experimental knowledge.Knowledgebase for drug-target relationships related to cancer as well as for supporting information or experimental data. | compound, drug, target gene, cancer relevant proteins, compound interactions, drug-target relationships, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools |
Cancer | International Research Training Group IRTG ; DFG ; Federal Ministry of Education and Research BMBF ; European Union |
PMID:20952398 | Free, Freely available | biotools:cancerresource, OMICS_01576 | https://bio.tools/cancerresource | http://bioinf-data.charite.de/cancerresource/index.php?site=home | SCR_011945 | 2026-08-08 12:04:28 | 5 | ||||
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NHLBI Exome Sequencing Project (ESP) Resource Report Resource Website 1000+ mentions |
NHLBI Exome Sequencing Project (ESP) (RRID:SCR_012761) | EVS | database, data or information resource | The goal of the project is to discover novel genes and mechanisms contributing to heart, lung and blood disorders by pioneering the application of next-generation sequencing of the protein coding regions of the human genome across diverse, richly-phenotyped populations and to share these datasets and findings with the scientific community to extend and enrich the diagnosis, management and treatment of heart, lung and blood disorders. The groups participating and collaborating in the NHLBI GO ESP include: Seattle GO - University of Washington, Seattle, WA Broad GO - Broad Institute of MIT and Harvard, Cambridge, MA WHISP GO - Ohio State University Medical Center, Columbus, OH Lung GO - University of Washington, Seattle, WA WashU GO - Washington University, St. Louis, MO Heart GO - University of Virginia Health System, Charlottesville, VA ChargeS GO - University of Texas Health Sciences Center at Houston | bio.tools, FASEB list |
is listed by: bio.tools is listed by: Debian has parent organization: University of Washington; Seattle; USA |
NHLBI | nlx_156901, biotools:esp, biotools:exome_variant_server | https://bio.tools/esp, https://bio.tools/exome_variant_server | SCR_012761 | Exome Variant Server, NHLBI GO Exome Sequencing Project (ESP) | 2026-08-08 12:04:29 | 2231 | ||||||
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Retinal Information Network Resource Report Resource Website 10+ mentions |
Retinal Information Network (RRID:SCR_012733) | database, data or information resource | RetNet provides tables of genes and loci causing inherited retinal diseases, such as retinitis pigmentosa, macular degeneration and Usher syndrome, and related information. This information is provided to the research community and other interested individuals for research purposes only. The information should not be used for medical or commercial purposes. Although we strive for accuracy and completeness, we cannot guarantee that all information is correct and complete. We welcome comments and suggestions! | has parent organization: University of Texas System; Texas; USA | nif-0000-31454 | SCR_012733 | RetNet | 2026-08-08 12:04:23 | 34 |
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