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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Specification URL Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
Oxford Nanopore Technologies
 
Resource Report
Resource Website
100+ mentions
Oxford Nanopore Technologies (RRID:SCR_003756) Oxford Nanopore commercial organization Commercial organization developing a disruptive, proprietary technology platform for the direct, electronic analysis of single molecules. The instruments GridION and MinION are adaptable for the analysis of DNA, RNA, proteins, small molecules and other types of molecule. Consequently, the platform has a broad range of potential applications, including scientific research, personalized medicine, crop science and security / defence. nanopore technology, dna, rna, protein, small molecule, molecule, analysis, nanopore, nanopore sensing is related to: READNA
is related to: Pychopper
nlx_158233 SCR_003756 Oxford Nanopore Technologies Ltd 2026-08-01 12:02:25 399
eBioscience
 
Resource Report
Resource Website
50+ mentions
eBioscience (RRID:SCR_003660) commercial organization An Antibody supplier nlx_152349 SCR_003660 2026-08-01 12:02:23 70
Signalway
 
Resource Report
Resource Website
10+ mentions
Signalway (RRID:SCR_003659) SAB commercial organization An Antibody supplier nlx_152462 SCR_003659 Signalway Antibody Co. Ltd 2026-08-01 12:02:16 11
RAREMETAL
 
Resource Report
Resource Website
10+ mentions
RAREMETAL (RRID:SCR_003573) RAREMETAL software resource A software program that facilitates the meta-analysis of rare variants from genotype arrays or sequencing. bio.tools is listed by: OMICtools
is listed by: bio.tools
is listed by: Debian
has parent organization: University of Michigan; Ann Arbor; USA
PMID:24894501 biotools:raremetal, OMICS_00243 https://bio.tools/raremetal SCR_003573 2026-08-01 12:02:15 22
Myelin Repair Foundation
 
Resource Report
Resource Website
1+ mentions
Myelin Repair Foundation (RRID:SCR_003723) MRF institution A non-profit foundation that funds basic research and is focused on accelerating the development of myelin repair therapeutics for multiple sclerosis. They have defined a 15-year research plan to develop a drug or drugs and believes its Accelerated Research Collaborative (ARC) model can subsequently be used to accelerate the treatment for all diseases. The ARC framework coordinates and manages the entire therapeutic development continuum from discovery biology to FDA approval. The model works by coordinating multi-disciplinary basic research from academic and government laboratories, systematically validating and derisking potential compounds/targets, and collaborating with pharma partners to increase the probability of successful programs. consortium, drug, myelin repair, therapeutic, myelin, drug development is listed by: Consortia-pedia Multiple Sclerosis, Neurological disease nlx_157901, grid.429475.9, Wikidata: Q6947290 https://ror.org/05yb6xa82 SCR_003723 2026-08-01 12:02:24 3
Tocris Bioscience
 
Resource Report
Resource Website
100+ mentions
Tocris Bioscience (RRID:SCR_003689) commercial organization An Antibody supplier nlx_152479 SCR_003689 2026-08-01 12:02:16 387
TransCelerate BioPharma
 
Resource Report
Resource Website
1+ mentions
TransCelerate BioPharma (RRID:SCR_003728) TransCelerate nonprofit organization Non-profit research organization aiming to accelerate drug development by increasing the quality and efficiency of clinical studies through the development of shared tools, methods, and platforms. Consortium partnerships are limited to pharmaceutical and biotechnology companies with research & development operations, although there are collaborations with external organizations such the Clinical Data Interchange Standards Consortium (CDISC). Its current focus is to collaborate on: * Standardizing risk-based monitoring * Development of methods to qualify and train clinical trial sites * Development of a common investigator web portal * Development of clinical data standards on efficacy, and methods for comparator drug trials It currently has 5 projects: # Standardized Approach for High-Quality, Risk-Based Monitoring program aims to develop an industry-wide standard and approach for risk-based monitoring of clinical trials in order to enhance patient safety and ensure the quality of clinical trial data. # Shared Site Qualification and Training program aims to standardize GCP training and site qualification credentials in order to realize efficiencies and accelerate study start-up timelines. # Common Investigator Site Portal is a platform designed to streamline investigator and site access through harmonized delivery of content and services. # Data Standards project is a partnership with CDISC to develop industry-wide data standards in priority therapeutic areas to support the exchange and submission of clinical research and meta-data, improving patient safety and outcomes. # Comparator Drugs project aims to establish reliable, rapid sourcing of quality products for use in clinical trials through a comparator supply model enabling accelerated trial timelines and enhanced patient safety. drug, clinical trial, multipharma, data sharing, drug development, consortium, medicine, clinical, standard specification is listed by: Consortia-pedia Member companies financial contributions ;
Member companies in-kind contributions ;
GlaxoSmithKline
nlx_157913 SCR_003728 TransCelerate BioPharma Inc. 2026-08-01 12:02:17 4
Roslin Cells
 
Resource Report
Resource Website
1+ mentions
Roslin Cells (RRID:SCR_003857) Roslin Cells commercial organization Organization that supplies undifferentiated, clinical grade, human pluripotent stem cell lines to the life science community, and works with academic, clinical and commercial colleagues to enable and facilitate the use of these high grade cells in the development of new reagents, drugs and cellular therapeutics. They also seek to drive the economic development of the stem cell sector in Scotland. Their products can act as a valuable tool in supporting clients' drug discovery, development and clinical research programmes. pluripotent stem cell, induced pluripotent stem cell, cell therapy, embryonic stem cell line, clinical grade is listed by: One Mind Biospecimen Bank Listing
is parent organization of: EBiSC
nlx_158181 SCR_003857 Roslin Cells Ltd 2026-08-01 12:02:34 2
PEAR
 
Resource Report
Resource Website
500+ mentions
PEAR (RRID:SCR_003776) PEAR software resource Software for an ultrafast, memory-efficient and highly accurate pair-end read merger. It is fully parallelized and can run with as low as just a few kilobytes of memory. next-generation sequencing, sequence analysis is listed by: OMICtools
has parent organization: Heidelberg Institute for Theoretical Studies; Heidelberg; Germany
PMID:24142950 OMICS_00674 SCR_003776 Pair-end read merger, PEAR: Pair-end read merger 2026-08-01 12:02:33 854
Chevron Corporation
 
Resource Report
Resource Website
1+ mentions
Chevron Corporation (RRID:SCR_003794) Chevron, CVX commercial organization An American multinational energy corporation headquartered in San Ramon, California, and active in more than 180 countries, that is engaged in every aspect of the oil, gas, and geothermal energy industries, including exploration and production; refining, marketing and transport; chemicals manufacturing and sales; and power generation. Chevron is one of the world's largest oil companies; as of 2013, it ranked third in the Fortune Global 500-2014 list of the world's largest companies. (Adapted from Wikipedia) oil, gas, geothermal energy, chemicals manufacturing, power generation Crossref funder ID: 100004366, grid.450626.3, ISNI: 0000 0004 0599 8199, Wikidata: Q319642, nlx_158090 https://ror.org/02jfa8730 SCR_003794 Chevron Corp., Chevron Corp 2026-08-01 12:02:25 1
BioReliance
 
Resource Report
Resource Website
50+ mentions
BioReliance (RRID:SCR_003791) BREL commercial organization Company that provides testing and manufacturing services to pharmaceutical and biopharmaceutical companies that span the product cycle from early pre-clinical development to licensed production. testing, manufacturing, pharmaceutical, biopharmaceutical has parent organization: Sigma-Aldrich
is parent organization of: BioReliance Biorepository
nlx_158085 SCR_003791 BioReliance Corporation, BioReliance Corp. 2026-08-01 12:02:25 62
Selleck Chemicals LLC
 
Resource Report
Resource Website
100+ mentions
Selleck Chemicals LLC (RRID:SCR_003823) commercial organization An Antibody supplier antibody, chemical supply, selleck chemicals nlx_152457 SCR_003823 Selleck Chemicals 2026-08-01 12:02:20 192
BioClinica
 
Resource Report
Resource Website
100+ mentions
BioClinica (RRID:SCR_003789) BioClinica commercial organization Pennsylvania-based company supporting pharmaceutical and medical device innovation with imaging core lab, EDC, IVR / IWR, CTMS, and supply chain forecasting and optimization. Its initial service was medical imaging for clinical trials. It is used to capture, collect, control quality, provide blinded reading services to the final delivery to the sponsor company and to the FDA or EMEA if required for medical images in a wide range of imaging modalities. (Wikipedia) clinical trial, pharmaceutical, medical device, medical imaging, cardiac safety, clinical Crossref funder ID: 100007742, ISNI: 0000 0004 0602 1531, Wikidata: Q4914605, grid.430790.9, nlx_158082 https://ror.org/03t95yr58 SCR_003789 BioClinica Inc. 2026-08-01 12:02:33 101
Quretec
 
Resource Report
Resource Website
1+ mentions
Quretec (RRID:SCR_003826) Quretec commercial organization Commercial organization that builds software for collection, management, and analysis of complex data, most typical in biomedical domain. The solutions are generic and can be used for multitude of uses and application domains. data capture, data management, analysis, biomedical is related to: AgedBrainSYSBIO grid.436973.c, Wikidata: Q30291134, nlx_158133 https://ror.org/02ca38p84 SCR_003826 Quretec Ltd., Quretec Ltd 2026-08-01 12:02:20 2
Grants.gov
 
Resource Report
Resource Website
10+ mentions
Grants.gov (RRID:SCR_002661) funding resource A source to FIND and APPLY for federal grants. The U.S. Department of Health and Human Services is proud to be the managing partner for Grants.gov, an initiative that is having an unparalleled impact on the grant community. All discretionary grants offered by the 26 federal grant-making agencies can be found on Grants.gov. Grants.gov was established as a governmental resource named the E-Grants Initiative, part of the President's 2002 Fiscal Year Management Agenda to improve government services to the public. The concept has its origins in the Federal Financial Assistance Management Improvement Act of 1999, also known as Public Law 106-107. Public Law 106-107 has since sunset and is now known as the Grants Policy Committee (GPC). For more information on the Grants Policy Committee, click here. Today, Grants.gov is a central storehouse for information on over 1,000 grant programs and provides access to approximately $500 billion in annual awards. You may find information on *What is a Grant? *Who is Eligible for a Grant? *Program highlights and accomplishments *Grants.gov in the News (Articles, press releases, milestones and events) *Program Status (Detailed information about our relationship with partner federal agencies, financial contributions, grant opportunities, fiscal reports, planning strategies and statistics.) grant, funding, award, database, opportunity is used by: NIF Data Federation
is used by: Aging Portal
is used by: NIDDK Information Network (dkNET)
Free, Freely available nif-0000-22393 SCR_002661 2026-08-01 12:02:12 36
NiBabel
 
Resource Report
Resource Website
100+ mentions
NiBabel (RRID:SCR_002498) NiBabel software resource A Python package for reading and writing a variety of medical and neuroimaging file formats. This includes: ANALYZE (plain, SPM99, SPM2), NIfTI1, as well as MINC. NiBabel is the successor of PyNIfTI. magnetic resonance, python, neuroimaging is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
is related to: PyNIfTI
is related to: MNE software
has parent organization: Neuroimaging in Python
Free, Available for download, Freely available nlx_155896 http://www.nitrc.org/projects/nibabel SCR_002498 NIPY File IO 2026-08-01 12:02:08 122
Pythagorean Displacement and Motion Regressors
 
Resource Report
Resource Website
1+ mentions
Pythagorean Displacement and Motion Regressors (RRID:SCR_002525) Pythagorean Displacement and Motion Regressors software resource Matlab script that uses the Pythagorean Theorem to calculate head motion and position, while preserving degrees of freedom. The motion parameters output by SPM (rp*.txt) estimate head position relative to the first volume in 3D translation and 3D rotation, which are often entered as a nuisance regressor during individual-level statistics. Regressing the total displacement and relative position can potentially explain more variance in voxel-level BOLD signals that is related to head movement during an fMRI experiment. algorithm, magnetic resonance, matlab, pythagorean theorem, head, motion, position, fmri is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) Free, Available for download, Freely available nlx_155931 SCR_002525 2026-08-01 12:02:11 5
Signed Differential Mapping
 
Resource Report
Resource Website
100+ mentions
Signed Differential Mapping (RRID:SCR_002554) SDM software resource Statistical method and software for conducting image- and coordinate-based meta-analysis of neuroimaging studies investigating differences in brain activity (e.g. BOLD response in fMRI, metabolism in PET) or structure (e.g. gray matter volume in VBM, voxel-based or TBSS white matter fractional anisotropy in DTI, etcetera). magnetic resonance, pet, spect, fmri, vbm, meta-analysis is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) Free, Available for download, Freely available nlx_155962 http://www.nitrc.org/projects/sdm SCR_002554 2026-08-01 12:01:50 150
MBASED
 
Resource Report
Resource Website
10+ mentions
MBASED (RRID:SCR_002584) software resource Software package containing functions for allele-specific gene expression (ASE) analysis using meta-analysis based allele-specific expression detection. software package, unix/linux, mac os x, windows, r, gene expression, sequencing, transcription is listed by: OMICtools
has parent organization: Bioconductor
PMID:25315065 Free, Available for download, Freely available OMICS_05502 http://www.bioconductor.org/packages/release/bioc/html/MBASED.html SCR_002584 Meta-analysis Based Allele-Specific Expression Detection, MBASED - Package containing functions for ASE analysis using Meta-analysis Based Allele-Specific Expression Detection 2026-08-01 12:01:51 17
pymzML
 
Resource Report
Resource Website
10+ mentions
pymzML (RRID:SCR_002500) software resource Python module to parse mzML data in Python based on cElementTree. It is an extension to Python that offers (i) an easy access to mass spectrometry (MS) data that allows the rapid development of tools, (ii) a very fast parser for mzML data and (iii) a set of functions to compare or handle spectra., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. standalone software, python, bio.tools is listed by: OMICtools
is listed by: bio.tools
is listed by: Debian
is related to: mzML
has parent organization: University of Munster; North Rhine-Westphalia; Germany
PMID:22302572 Free, Available for download, Freely available biotools:pymzml, OMICS_03355 https://bio.tools/pymzml SCR_002500 2026-08-01 12:01:49 18

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