Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
NxGview Resource Report Resource Website |
NxGview (RRID:SCR_012994) | NxGview | software resource | A virtual software pipeline that contains several PERL modules for processing next generation sequencing data. |
is listed by: OMICtools has parent organization: SourceForge |
OMICS_01065 | SCR_012994 | 2026-08-01 12:04:54 | 0 | ||||||||||
|
Bamformatics Resource Report Resource Website 1+ mentions |
Bamformatics (RRID:SCR_013041) | Bamformatics | software resource | Software that provides a coherent and consistent approach to analysis of high-throughput sequencing data. | matlab |
is listed by: OMICtools has parent organization: SourceForge |
OMICS_00283 | SCR_013041 | Bamformatics - Toolkit and GUI for sequencing data analysis | 2026-08-01 12:04:55 | 1 | ||||||||
|
BSmapper Resource Report Resource Website |
BSmapper (RRID:SCR_012998) | BSmapper | software resource | Sequence mapper for bisulfite sequencing reads for DNA methylation studies. |
is listed by: OMICtools has parent organization: SourceForge |
GNU General Public License, v3 | OMICS_00580 | SCR_012998 | 2026-08-01 12:04:54 | 0 | |||||||||
|
MendelScan Resource Report Resource Website 1+ mentions |
MendelScan (RRID:SCR_013053) | MendelScan | software resource | A software tool for prioritizing candidate variants in family-based studies of inherited disease. | matlab |
is listed by: OMICtools has parent organization: SourceForge |
GNU General Public License, v2 | OMICS_00065 | SCR_013053 | MendelScan - Variant scoring and linkage mapping for family exome sequencing | 2026-08-01 12:04:44 | 4 | |||||||
|
ProbeSelect Resource Report Resource Website 1+ mentions |
ProbeSelect (RRID:SCR_012965) | ProbeSelect | software resource | Software for selecting probes in heterogenous transcriptional sets. |
is listed by: OMICtools has parent organization: SourceForge |
OMICS_00836 | SCR_012965 | ProbeSelect - Selecting probes in heterogenous transcriptional sets | 2026-08-01 12:04:43 | 4 | |||||||||
|
SeqGenome Browser Resource Report Resource Website |
SeqGenome Browser (RRID:SCR_012970) | SeqGenome Browser | software resource | Mini cross-platform local genome browser software designed for visualizing next-generation sequencing data. | c++ |
is listed by: OMICtools has parent organization: SourceForge |
GNU General Public License, v2 | OMICS_00924 | SCR_012970 | 2026-08-01 12:04:54 | 0 | ||||||||
|
miRDeep-P Resource Report Resource Website 1+ mentions |
miRDeep-P (RRID:SCR_013026) | miRDP | software resource | A computational tool for analyzing the microRNA (miRNA) transcriptome in plants. |
is listed by: OMICtools has parent organization: SourceForge |
PMID:21775303 | GNU General Public License, v3 | OMICS_00375 | SCR_013026 | 2026-08-01 12:04:54 | 6 | ||||||||
|
KungFq Resource Report Resource Website |
KungFq (RRID:SCR_012979) | KungFq | software resource | Tool that compresses and decompresses fastq files. |
is listed by: OMICtools has parent organization: SourceForge |
PMID:23221092 | OMICS_00962 | SCR_012979 | 2026-08-01 12:04:42 | 0 | |||||||||
|
ncPRO-seq Resource Report Resource Website 1+ mentions |
ncPRO-seq (RRID:SCR_013031) | ncPRO-seq | software resource | Software that aims to interrogate and perform detailed analysis on small RNAs derived from annotated non-coding regions. |
is listed by: OMICtools has parent organization: SourceForge |
PMID:23044543 | OMICS_00366 | SCR_013031 | ncPRO-seq - A tool for annotation and profiling of ncRNAs from small RNA sequencing data | 2026-08-01 12:04:44 | 9 | ||||||||
|
vcf2MSAT Resource Report Resource Website |
vcf2MSAT (RRID:SCR_013034) | vcf2MSAT | software resource | A python software program to identify microsatellite repeat regions based on known polymorphisms identified in a .vcf report after using SAMtools to analyze next-generation sequencing files. |
is listed by: OMICtools has parent organization: SourceForge |
OMICS_00118 | SCR_013034 | vcf2MSAT - Find Microsatellites in a .vcf report | 2026-08-01 12:04:54 | 0 | |||||||||
|
FishingCNV Resource Report Resource Website 10+ mentions |
FishingCNV (RRID:SCR_013038) | FishingCNV | software resource | A software tool developed at McGill University, is a tool for comprehensive analysis of rare copy number variations in high-throughput exome sequencing data. |
is listed by: OMICtools has parent organization: SourceForge |
PMID:23539306 | Commercial license | OMICS_00334 | SCR_013038 | FishingCNV - Copy number variation detection in exome sequencing data, FishingCNV - CNV detection in exome sequencing data, FishingCNV - Copy number variation (CNV) detection in exome sequencing data | 2026-08-01 12:04:55 | 11 | |||||||
|
MSAProbs Resource Report Resource Website 10+ mentions |
MSAProbs (RRID:SCR_012982) | MSAProbs | software resource | An open-source protein multiple sequence ailgnment algorithm, achieving the stastistically highest alignment accuracy on popular benchmarks. | c++ |
is listed by: OMICtools has parent organization: SourceForge |
PMID:20576627 | GNU General Public License, v3 | OMICS_00980 | SCR_012982 | MSAProbs: Multiple Sequence Alignment | 2026-08-01 12:04:54 | 19 | ||||||
|
QcReads Resource Report Resource Website 1+ mentions |
QcReads (RRID:SCR_013002) | QcReads | software resource | Provides an efficient tool for trimming adapter sequences and low quality sequences, in raw reads generated by the high throughput sequencing platforms. |
is listed by: OMICtools has parent organization: SourceForge |
OMICS_01088 | SCR_013002 | 2026-08-01 12:04:54 | 1 | ||||||||||
|
HECTOR Resource Report Resource Website 50+ mentions |
HECTOR (RRID:SCR_013007) | HECTOR | software resource | A parallel multistage k-hopo spectrum based homopolymer-length error corrector for 454 sequencing data. |
is listed by: OMICtools has parent organization: SourceForge |
OMICS_01104 | SCR_013007 | HECTOR: Parallel error corrector for 454 datasets | 2026-08-01 12:04:44 | 55 | |||||||||
|
miRDeep* Resource Report Resource Website 10+ mentions |
miRDeep* (RRID:SCR_012960) | miRDeep* | software resource | An integrated application software tool for miRNA identification from RNA sequencing data. |
is listed by: OMICtools has parent organization: SourceForge |
PMID:23221645 | GNU General Public License, v3, Acknowledgement requested | OMICS_00374 | SCR_012960 | 2026-08-01 12:04:42 | 23 | ||||||||
|
AMOS Resource Report Resource Website 1000+ mentions |
AMOS (RRID:SCR_013067) | AMOS | software resource | A collection of tools and class interfaces for the assembly of DNA reads. | bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools has parent organization: SourceForge |
DOI:10.1093/bib/bbr074 | OMICS_00008, biotools:amos | https://bio.tools/amos, https://sources.debian.org/src/ampliconnoise/ | SCR_013067 | 2026-08-01 12:04:55 | 4769 | |||||||
|
Contrail Resource Report Resource Website 1+ mentions |
Contrail (RRID:SCR_013066) | Contrail | software resource | A Hadoop based genome assembler for assembling large genomes in the clouds. | mapreduce/hadoop |
is listed by: OMICtools has parent organization: SourceForge |
OMICS_00012 | SCR_013066 | 2026-08-01 12:04:44 | 5 | |||||||||
|
Easyfig Resource Report Resource Website 1000+ mentions |
Easyfig (RRID:SCR_013169) | Easyfig | software resource | A Python application for creating linear comparison figures of multiple genomic loci with an easy-to-use graphical user interface (GUI). |
is listed by: OMICtools has parent organization: SourceForge |
OMICS_00907 | SCR_013169 | 2026-08-01 12:04:56 | 1101 | ||||||||||
|
ChimeraSlayer Resource Report Resource Website 100+ mentions |
ChimeraSlayer (RRID:SCR_013283) | ChimeraSlayer | software resource | A chimeric sequence detection utility, compatible with near-full length Sanger sequences and shorter 454-FLX sequences (~500 bp). | bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian has parent organization: SourceForge |
OMICS_01113, biotools:chimeraslayer | https://bio.tools/chimeraslayer | SCR_013283 | 2026-08-01 12:04:46 | 319 | ||||||||
|
Telescoper Resource Report Resource Website |
Telescoper (RRID:SCR_013206) | Telescoper | software resource | An algorithm that iteratively extends long paths through a series of read-overlap graphs and evaluates them based on a statistical framework. | bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools has parent organization: SourceForge |
PMID:22962446 | biotools:telescoper, OMICS_00036 | https://bio.tools/telescoper | SCR_013206 | Telescoper - De novo assembly algorithm | 2026-08-01 12:04:45 | 0 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the RRID Resources search. From here you can search through a compilation of resources used by RRID and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that RRID has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on RRID then you can log in from here to get additional features in RRID such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into RRID you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
