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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Canadian Open Neuroscience Platform Resource Report Resource Website 10+ mentions |
Canadian Open Neuroscience Platform (RRID:SCR_016433) | CONP | data or information resource, service resource, storage service resource, portal, data repository, organization portal | Web interface that facilitates open science for neuroscience community by simplifying global access to and sharing of datasets and tools. Portal internalizes typical data cycle of research project, beginning with data acquisition, followed by data processing with published tools, and ultimately publication of results with link to original dataset. Platform to form interactive network of collaborations in brain research, interdisciplinary student training, international partnerships, clinical translation and open publishing. Provides unified interface to Canadian neuroscience research community. Open neuroscience research with sharing of both data and methods, to create large-scale databases, development of standards for sharing, facilitation of advanced analytic strategies, open dissemination to global community of neuroscience data and methods, and establishment of training programs for next generation of computational neuroscience researchers. | interactive, network, brain, research, interdisciplinary, student, training, international, partnership, clinical, translation, open, publishing, Canada |
is related to: Brain Canada is related to: Health Canada |
Open source | r3d100013461 | https://github.com/CONP-PCNO/conp-portal, https://doi.org/10.17616/R31NJMVP | SCR_016433 | CONP:Canadian Open Neuroscience Platform | 2026-08-08 12:00:54 | 11 | ||||||
|
FFTW Resource Report Resource Website 10+ mentions |
FFTW (RRID:SCR_016554) | FFTW | software library, software resource, software toolkit | Software as a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data (as well as of even/odd data, i.e. the discrete cosine/sine transforms or DCT/DST). | library, collection, fast, C routine, compute, discrete, Fourier, transform | has parent organization: Massachusetts Institute of Technology; Massachusetts; USA; | DOI:10.1109/JPROC.2004.840301 | Free, Available for download, Freely available | SCR_016554 | Fastest Fourier Transform in the West | 2026-08-08 12:00:58 | 17 | |||||||
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FCS Express Resource Report Resource Website 500+ mentions |
FCS Express (RRID:SCR_016431) | software resource, software application, data analysis software, data processing software | Software tool for flow and image cytometry data analysis by De Novo Software company. | flow, image, analysis, data, cytometry, De Novo Software, research, clinical, laboratory | is listed by: SoftCite | Commercially available, Tutorial available | SCR_016431 | 2026-08-08 12:00:55 | 518 | ||||||||||
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Frozen Noise Resource Report Resource Website 1+ mentions |
Frozen Noise (RRID:SCR_016558) | software toolkit, software resource, software application, data analysis software, data processing software | Software analysis tools for electrophysiological somatosensory cortex databank. Allows to estimate the information content of spiking in single neuron resolution. It accompanies the open source intracellular recording database by Lantyer and colleagues. | electrophysiological, somatosensory, cortex, estimate, spiking, single, neuron, resolution | is related to: MATLAB | Free, Available for download, Freely available | SCR_016558 | 2026-08-08 12:00:33 | 4 | ||||||||||
|
Suite2P Resource Report Resource Website 50+ mentions |
Suite2P (RRID:SCR_016434) | software toolkit, image processing software, software resource, software application, data analysis software, data processing software | Software package for processing two-photon recordings. Available together with a graphical user interface that allows manual curation of the results. Used in two-photon microscopy for the analysis of data from two-photon imaging. Registers raw movies, detects active cells, extracts their calcium traces and infers their spike times. | two, photon, microscopy, processing, image, data, record |
is related to: MATLAB has parent organization: University College London; London; United Kingdom |
Free, Available for download, Freely available | SCR_016434 | 2026-08-08 12:00:31 | 84 | ||||||||||
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User Friendly Functional Connectivity - UF²C Resource Report Resource Website 1+ mentions |
User Friendly Functional Connectivity - UF²C (RRID:SCR_016550) | UF²C | software toolkit, image analysis software, software resource, software application, data analysis software, data processing software | Software tool to standardize and facilitate connectivity studies through a graphical user interface and validated preset parameters. | standardize, functional, connectivity, brain, magnetic, resonance, imaging, graphical, user, interface, parameter |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: MATLAB |
FAPESP | Free, Available for download, Freely available | SCR_016550 | User Friendly Functional Connectivity | 2026-08-08 12:00:57 | 1 | |||||||
|
Sleep Heart Health Study Resource Report Resource Website 50+ mentions |
Sleep Heart Health Study (RRID:SCR_016559) | SHHS | data or information resource, portal, disease-related portal, topical portal | Portal for a multi-cohort study focused on sleep-disordered breathing and cardiovascular outcomes implemented by the National Heart Lung and Blood Institute. Recorded signals are: EEG, ECG, EOG, SaO2, HR, EOG, EMG, respiratory inductance plethysmography, respiration (thermistor), position, light. | dataset, analysis, sleep, apnea, breathing, disorder, cardiovascular, disease, EEG, ECG, respiration, PSG | is listed by: National Sleep Research Resource (NSRR) | sleep disorder, sleep apnea, cardiovascular disease | NHLBI U01 HL53916; NHLBI U01 HL53931; NHLBI U01 HL53934; NHLBI U01 HL53937; NHLBI U01 HL64360; NHLBI U01 HL53938; NHLBI U01 HL53941 |
PMID:9493915 | Free, Freely available, Registration required for membership | SCR_016559 | Sleep Heart Health Study | 2026-08-08 12:00:58 | 84 | |||||
|
Praat Resource Report Resource Website 100+ mentions |
Praat (RRID:SCR_016564) | software resource, software application, data analysis software, data processing software | Software tool for phonetics research to analyse, synthesize, and manipulate speech. | phonetics, analyse, systhetize, speech | Free, Available for download, Freely available, Tutorial available | http://www.praat.org, https://github.com/praat/praat/blob/master/fon/manual_tutorials.cpp | SCR_016564 | 2026-08-08 12:00:33 | 123 | ||||||||||
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SINCERA Pipeline Resource Report Resource Website 1+ mentions |
SINCERA Pipeline (RRID:SCR_016563) | SINCERA | software resource, software application, data analysis software, data analytics software, data processing software | Software tool implemented in R S4 as an analytic pipeline for processing single-cell RNA-seq data from a whole organ or sorted cells. Used for Single Cell RNA-Seq profiling analysis. | single, cell, RNA seq, data, sorted, whole, organ, profiling, analysis | NHLBI U01 HL110964; NHLBI U01 HL122642; NHLBI R01 HL105433 |
PMID:26600239 | Free, Available for download, Freely available | https://research.cchmc.org/pbge/sincera.html | SCR_016563 | SINCERA, SINgle CEll RNA seq profiling Analysis | 2026-08-08 12:00:57 | 5 | ||||||
|
Stitching Resource Report Resource Website 1+ mentions |
Stitching (RRID:SCR_016568) | image reconstruction software, image processing software, image analysis software, software resource, software application, data processing software | Software package available through Fiji to image large biological specimen at high resolution. Comes with 2 different plugins to reconstruct big images/stacks : Pairwise Stitching to stitch two 2d-5d images, and Grid/Collection Stitching to stitch an arbitrary amount of 2d-5d input images. | biological, speciment, resoultion, reconstruct, big, image, stack, stitching | Free, Available for download, Freely available | https://github.com/fiji/Stitching/releases/tag/Stitching_-3.1.3 | SCR_016568 | 2026-08-08 12:00:33 | 4 | ||||||||||
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Docker Desktop Resource Report Resource Website 10+ mentions |
Docker Desktop (RRID:SCR_016445) | DD | software development environment, software resource, software application, software development tool | Software development environment that helps users build containerized software using Docker and Kubernetes softwares. It is executable on desktop and cloud, and allows access to a vast library of community containerized content in Docker Hub. | software, container, build, code, coding, containerize, develop, development, environment, application | Free, Commercially available, Requires account to download, Available for download | SCR_016445 | Docker, DockerDesktop | 2026-08-08 12:00:31 | 26 | |||||||||
|
Microscopy Image Browser Resource Report Resource Website 100+ mentions |
Microscopy Image Browser (RRID:SCR_016560) | MIB | image processing software, software resource, software application, data analysis software, standalone software, data visualization software, data processing software | Software package for advanced image processing, analysis, segmentation and visualization of multi-dimensional (2D-4D) light and electron microscopy datasets. | segmentation, analysis, multidimentional, dataset, light, electron, microscopy, image, processing, visualization, data, bio.tools |
is listed by: Debian is listed by: bio.tools is related to: MATLAB |
Biocenter Finland ; Biological Imaging Network Academy of Finland ; University of Helsinki |
PMID:26727152 | Free, Available for download, Freely available | biotools:mib | https://www.youtube.com/watch?v=I9FWmJX_nl0&index=1&list=PLGkFvW985wz8cj8CWmXOFkXpvoX_HwXzj, https://bio.tools/mib | SCR_016560 | MIB, Microscopy Image Browser | 2026-08-08 12:00:57 | 160 | ||||
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MotionCor2 Resource Report Resource Website 100+ mentions |
MotionCor2 (RRID:SCR_016499) | software resource, software application, data analysis software, data processing software | Software tool for anisotropic correction of beam-induced motion for improved cryo-electron microscopy. Used to describe the sample motion as a local deformation that varies smoothly throughout the exposure. A program running on Linux. | anisotropic, correction, beam, induced, motion, cryo, electron, microscopy, exposure, data | has parent organization: University of California at San Francisco; California; USA | NIH R01 GM031627; NIGMS P01 GM111126 |
PMID:28250466 | Restricted | http://msg.ucsf.edu/em/software/motioncor2.html | SCR_016499 | MotionCor | 2026-08-08 12:00:57 | 186 | ||||||
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MCTrace Resource Report Resource Website 1+ mentions |
MCTrace (RRID:SCR_016532) | image analysis software, software resource, software application, data analysis software, data processing software | Software tool as a program for building skeletonized models of 3D structures with a graphical user interface. GUI based neuronal network model building. | build, skeletonized, model, 3D structure, neuronal, network | Free, Available for download, Freely available | SCR_016532 | 2026-08-08 12:00:32 | 3 | |||||||||||
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Image Pro Resource Report Resource Website 500+ mentions |
Image Pro (RRID:SCR_016497) | image processing software, image analysis software, software resource, software application, data processing software | Software platform to perform image processing, analysis, and data reporting for microscope-based research and quality inspection. | MediaCybernetics Inc., capture, process, measure, analyze, share, image, data, automate, collect | Restricted | SCR_016758 | https://mediacy.com/image-pro | SCR_016497 | Image-Pro, Image-Pro Premier, Image Pro Premier | 2026-08-08 12:00:55 | 548 | ||||||||
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Human Cell Atlas Resource Report Resource Website 100+ mentions |
Human Cell Atlas (RRID:SCR_016530) | data or information resource, image, atlas, catalog, database, map, portal | Software tool as a catalog of comprehensive reference of human cells based on their stable properties, transient features, locations and abundances. Map to show the relationships among its elements. Open data international collaborative project involving diverse scientific communities to provide a framework for understanding cellular dysregulation in human disease. | human, cell, line, atlas, catalog, map, open, data, international, project, FASEB list |
is listed by: NIDDK Information Network (dkNET) is related to: Optimus Pipeline is related to: Smart-seq2 Multi-Sample Pipeline is related to: Broad Institute Genomics Platform |
PMID:29206104 | Free, Available for download, Freely available | SCR_016530 | 2026-08-08 12:00:56 | 127 | |||||||||
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Tests for deviation from Hardy-Weinberg equilibrium Resource Report Resource Website 10+ mentions |
Tests for deviation from Hardy-Weinberg equilibrium (RRID:SCR_016496) | software resource, software application, data analysis software, data processing software | Software tool for performing tests for deviation from Hardy-Weinberg equilibrium and tests for association. Used in population-based genetic association studies to identify susceptibility genes for complex diseases. | deviation, Hardy-Weinberg, equilibrium, test, association, population, genetic, identify, susceptibility, gene, disease, single, nucleotide, polymorphisms, snp, allele | SCR_016496 | 2026-08-08 12:00:57 | 18 | ||||||||||||
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Cardiovascular Disease Knowledge Portal Resource Report Resource Website 10+ mentions |
Cardiovascular Disease Knowledge Portal (RRID:SCR_016536) | data or information resource, topical portal, database, portal, disease-related portal | Platform for analysis of the genetics of cardiovascular disease.Used for searching and analysis of human genetic information linked to myocardial infarction, atrial fibrillation and related traits while protecting the integrity and confidentiality of the data. | genetic, data, cardiovascular, disease, human | is listed by: NIDDK Information Network (dkNET) | cardiovascular disease, myocardial infarction, atrial fibrillation | Accelerating Medicines Partnership in Type 2 Diabetes ; National Institute of Cardiovascular Diseases and Stroke |
Free, Available for download, Google ID required, Tutorial available | SCR_016536 | 2026-08-08 12:00:58 | 31 | ||||||||
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jPerfusionModule Resource Report Resource Website 1+ mentions |
jPerfusionModule (RRID:SCR_016534) | image analysis software, software resource, software application, data analysis software, data processing software | Software tool written in Java that reads DICOM-files from Dynamic Susceptibility Contrast (DSC) Magnetic Resonance Imaging (MRI) and calculates standardized Time-to-Peak (stdTTP) parameter. Maps from this calculation are provided as RGB- and Monochrom2-Dicom files and may be sent to a PACS automatically. Works on windows® platforms on PC’s (Intel® CPUs from Pentium I up to the I7-octo cores) together with the Philips 1.5T ACS-NT up to the Ingenia Systems (n> 20.000), with the Philips 3.0T Systems (n ~ 1.000), the Siemens 1.5T Avanto (SQ-machine) (n> 10.000) and the Siemens 3.0T TimTrio (n ~ 200) so far. Works with uncompressed DICOM-standard files. | dictom, file, read, dynamic, susceptibility, constrast, mangentic, resonance, imaging, calculate, standardized, stdTTP, parameter, | Commercially available | SCR_016534 | 2026-08-08 12:00:56 | 1 | |||||||||||
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VoxBlast Resource Report Resource Website 1+ mentions |
VoxBlast (RRID:SCR_016491) | image processing software, 3d visualization software, software application, software resource, data visualization software, data processing software | Software application for science and medicine which offers 3-D Measurement, 3-D Volume Visualization, and 3-D Rendering for any 3-D data. It accepts stacks of registered 2-D images and creates 3-D projections from any viewpoint. | VayTek Inc., 3D, image, data, visualisation, reconstruction, measurement, projection, science, medicine |
is listed by: OMICtools has parent organization: University of Iowa Labs and Facilities |
Commercially available, Free demo version available | SCR_016491 | 2026-08-08 12:00:56 | 1 |
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