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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Food Repo Resource Report Resource Website 1+ mentions |
Food Repo (RRID:SCR_016097) | database, data or information resource | Database of barcoded food products. Food Repo provides data that is on the package of each product, and collects its data via food distributors and volunteer contributors. | food, diet, barcode, database, switzerland | Kristian Gerhard Jebsen Foundation | Freely available, Public | SCR_016097 | The Open Food Repo, OpenFood | 2026-08-08 12:04:34 | 2 | |||||||||
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Teaching Commons Resource Report Resource Website |
Teaching Commons (RRID:SCR_014638) | database, data or information resource | A library of open source teaching and educational resources for professors and students. It includes resources such as textbooks, lesson plans, multimedia, and lectures from participating universities and institutions. Subject areas include the life sciences, the arts and humanities, law, social and behavioral sciences, medicine and health, engineering, education, the physical sciences, and mathematics. Users can share their own work and adopt others' on the platform. | library, educational, teaching, student, textbook, course material, lesson plan, multimedia, lecture, open source | is affiliated with: Digital Commons Network | Open source, Freely available | SCR_014638 | 2026-08-08 12:04:31 | 0 | ||||||||||
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nPOD TCR/BCR Search Resource Report Resource Website 1+ mentions |
nPOD TCR/BCR Search (RRID:SCR_015851) | database, data or information resource | Database of sequence data generated from high-throughput immunosequencing of the TCR beta chain (TRB) and B cell receptor (BCR) immunoglobulin heavy chain (IGH). This data comes from cells from NPOD donors. | tcr, bcr, beta chain, tcr beta chain, b cell receptor, immunosequencing, immunoglobulin heavy chain, igh | Adaptive Biotechnologies ; NIAID P01 AI42288; NIDDK R01 DK096492; NIDDK R01 DK106191; NIDDK U01 DK104147; NIDDK UC4 DK104194; NIDDK U01 DK104162; NIDDK R01 DK099317; Juvenile Diabetes Research Foundation 1-2008-994; Juvenile Diabetes Research Foundation 27-2012-450; Juvenile Diabetes Research Foundation 2-2012-280; Juvenile Diabetes Research Foundation 25-2013-268; Helmsley Charitable Trust |
PMID:27942583 | Freely available, Acknowledgement requested | SCR_015851 | TCRBCR Search, TCR/BCR Search, nPOD TCRBCR Search | 2026-08-08 12:04:33 | 3 | ||||||||
|
ImmunoBase Resource Report Resource Website 10+ mentions |
ImmunoBase (RRID:SCR_014642) | database, data or information resource | Web based resource focused on the genetics and genomics of immunologically related human diseases. Their mission is to provide a curated and integrated set of datasets and tools to support and promote research in this area. The current focus of the site is to integrate and curate summary case/control association statistics from the consortium of 12 diseases originally targeted by the ImmunoChip consortium. | immunology, database, web based, genetics, genomics, immunologically related human diseases, gwas, FASEB list | Juvenile Diabetes Research Foundation Wellcome Trust Diabetes and Inflammation Laboratory | SCR_014642 | 2026-08-08 12:04:36 | 45 | |||||||||||
|
MassBank of North America Resource Report Resource Website 100+ mentions |
MassBank of North America (RRID:SCR_015536) | MoNA | database, data or information resource | Metadata-centric, auto-curating repository designed for storage and querying of mass spectral records. It contains metabolite mass spectra, metadata and associated compounds. | mass spectrometry, ms database, mass spectrometry database, mass spectral records, FASEB list | has parent organization: University of California at Davis; California; USA | Available for download, The scientific community can contribute to this resource | r3d100012318 | https://doi.org/10.17616/R3ND3Z | SCR_015536 | MassBank of North America (MoNA) | 2026-08-08 12:04:38 | 332 | ||||||
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In vivo - In silico Metabolite Database Resource Report Resource Website |
In vivo - In silico Metabolite Database (RRID:SCR_015537) | IIMDB | database, data or information resource | Database of known biochemical compounds collected from existing biochemical databases, as well as computationally generated human phase I and phase II metabolites of known compounds. | chemical compound database, biochemical compound database, computationally generated chemical compound |
uses: KEGG uses: HMDB uses: DrugBank has parent organization: University of Connecticut; Connecticut; USA |
Account required, License required | SCR_015537 | In vivo In silico Metabolite Database, In vivo/ In silico Metabolite Database (IIMDB), In vivo/In silico Metabolite Database | 2026-08-08 12:04:37 | 0 | ||||||||
|
ClinGen Resource Report Resource Website 1000+ mentions |
ClinGen (RRID:SCR_014968) | CGR | database, data or information resource | Genomics knowledgebase for clinical relevance of genes and variants for use in research. ClinGen's primary function is to store and share information for the benefit of the scientific community. Laboratory scientists, clinicians, and patients can share and access data. | database, knowledgebase, genomics, healthcare, clinical, FASEB list | is related to: CivicDb | Eunice Kennedy Schriver NICHD ; NHGRI U41 HG006834-01A1; NHGRI U01 HG007437-01; NHGRI U01 HG007436-01; NCI HHSN261200800001E; NCI contract HHSN261200800001E |
PMID:26014595 | Free, Available to the scientific community | SCR_014968 | Clinical Genome Resource (ClinGen), Clinical Genome Resource | 2026-08-08 12:04:37 | 1153 | ||||||
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NORD Rare Disease Database Resource Report Resource Website |
NORD Rare Disease Database (RRID:SCR_014573) | database, data or information resource | A database which provides brief introductions of rare diseases. New topics and diseases are added with the help of rare disease medical experts. This is mainly targeted at patients and their families but has useful information for professionals. | nord, rare disease, database, patient, family | Rare disease | Public | SCR_014573 | 2026-08-08 12:04:36 | 0 | ||||||||||
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Ultimate Rough Aggregation of Metabolic Map Resource Report Resource Website |
Ultimate Rough Aggregation of Metabolic Map (RRID:SCR_014694) | database, data or information resource | Metabolic pathway map that collects metabolic data gathered from multiple public databases and organizes them in one central location. | database, metabolism, metabolic map, metabolic pathway, aggregation, public database |
uses: KEGG uses: HMDB uses: CHEBI |
Public | SCR_014694 | An Ultimate Rough Aggregation of Metabolic Map | 2026-08-08 12:04:36 | 0 | |||||||||
|
MicrocircuitDB Resource Report Resource Website |
MicrocircuitDB (RRID:SCR_014577) | database, data or information resource | A database for storing and efficiently retrieving realistic computational models of brain microcircuits and networks. The focus is on microcircuits that are based on experimentally demonstrated properties of neurons and their connectivity. | database, microcircuit, micro circuit, brain, neuron, connectivity |
works with: ModelDB works with: NeuronDB |
Researchers may contribute to this resource | SCR_014577 | 2026-08-08 12:04:37 | 0 | ||||||||||
|
RepOD Resource Report Resource Website 10+ mentions |
RepOD (RRID:SCR_014697) | database, data or information resource | An online platform for open source data/datasets created, collected or annotated for scientific research of all fields and disciplines. Registered users can share data relating to their research project and view data from other projects. Groups can combine datasets into collections associated with the group, in contrast to individual members of the group hosting their own data. | repository, open source, open data, research data, platform | Open source, Available to the research community, Registration required | r3d100011903 | SCR_014697 | Repository for Open Data, Repository for Open Data (RepOD) | 2026-08-08 12:04:32 | 12 | |||||||||
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Astrocyte Reactivity RNA-Seq Browser Resource Report Resource Website 1+ mentions |
Astrocyte Reactivity RNA-Seq Browser (RRID:SCR_015033) | database, data or information resource | Database containing information about RNA-sequencing and astrocyte reactivity. Searching a gene through this engine provides differential expression data for various experimental conditions. | astrocyte, glia, reactivity, rna-seq, search engine | has parent organization: University of California Los Angeles Department of Neurobiology | NIH NS057624; NIH NS084030; NIH P30 NS062691; NIH NS060677; NIH MH099559A; NIH MH104069; Dr. Miriam and Sheldon G. Adelson Medical Foundation ; Wings for Life |
PMID:27027288 | Public | SCR_015033 | 2026-08-08 12:04:32 | 3 | ||||||||
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Glycan Mass Spectral Database (GMDB) Resource Report Resource Website |
Glycan Mass Spectral Database (GMDB) (RRID:SCR_014667) | GMDB | database, data or information resource | A multistage tandem mass spectral database using a variety of structurally defined glycans. It provides tools for glycomics research that enable users to identify glycans by spectral matching. The database stores MS2, MS3, and MS4 spectra of N-and O-linked glycans, and glycolipid glycans as well as the partial structures of these glycans. | glycomics, database, metagenomics, glycan, mass, spectral matching, tandem mass spectra | is listed by: Metabolomics Workbench | New Energy and Industrial Technology Development Organization ; Ministry of Education Culture Sports Science and Technology MEXT ; Tsukuba Advanced Computing Center of the National Institute of Advanced Industrial Science and Technology |
SCR_014667 | Glycan Mass Spectral Database | 2026-08-08 12:04:37 | 0 | ||||||||
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Mass Spectral Library Resource Report Resource Website 10+ mentions |
Mass Spectral Library (RRID:SCR_014668) | database, data or information resource | A library containing spectra upwards of 200,000 chemical compounds. Spectra include metabolites, peptides, contaminants, and lipids. All spectra and chemical structures are examined by professionals. | library, database, spectra, mass spectrometry, metabolomics, metabolites, protein, lipid, contaminant | is listed by: Metabolomics Workbench | Available with the NIST MS Search Program for Windows | SCR_014668 | 2026-08-08 12:04:31 | 21 | ||||||||||
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Datasets2Tools Resource Report Resource Website 1+ mentions |
Datasets2Tools (RRID:SCR_016174) | database, data or information resource | Database for the discovery and evaluation of biomedical digital objects. It includes a wide variety of enrichment analyses, gene interaction networks, interactive data visualizations, datasets, and computational tools. | biomedical, digital, bioinformatics, dataset, rna seq, computation, microarray, proteomic, bio.tools |
is listed by: bio.tools is listed by: Debian |
Public, Freely available | biotools:datasets2tools | https://bio.tools/datasets2tools | SCR_016174 | 2026-08-08 12:04:34 | 1 | ||||||||
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Reefgenomics Resource Report Resource Website 10+ mentions |
Reefgenomics (RRID:SCR_015009) | database, data or information resource | Database for marine genomics data. Users can access genomics datasets from various organisms as well as carry out BLAST and submit genomics information of their own. Data sets include coral, aiptasia, sponges, and sybiodinium. | marine genomics, genomics database, blast | has parent organization: King Abdullah University of Science and Technology; Makkah Province; Saudi Arabia | DOI:10.1093/database/baw152 | Available to the research community, The community can contribute to this resource | SCR_015009 | reefgenomics.org | 2026-08-08 12:04:37 | 43 | ||||||||
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Chemical Translation Service Resource Report Resource Website 10+ mentions |
Chemical Translation Service (RRID:SCR_014681) | CTS | database, data or information resource, service resource | A translation service which contains a registry of pubicly available chemical information such as structures, chemical names, chemical synonyms, database identifiers, molecular masses, XlogP and proton-donor/acceptor data for compound-specific, structure-based cross references. It offers single ID conversion, batch ID conversion, InChI code conversion, and other services. | translation service, chemical translation, metabolomics, metabolomics tool, chemical properties, chemical structure, compound, chemical registry, cross reference |
is listed by: Metabolomics Workbench has parent organization: Metabolomics Fiehn Lab |
Available to public, A web GUI is used and a soap-based application-programming interface was implemented for automated access | SCR_014681 | Chemical Translation Service (CTS) | 2026-08-08 12:04:32 | 25 | ||||||||
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Mamit tRNA Resource Report Resource Website 1+ mentions |
Mamit tRNA (RRID:SCR_015493) | database, data or information resource | Compilation of mammalian mitochondrial tRNA genes. Sequences are classified into families according to the amino acid specificity of the different tRNAs as defined by the anticodon triplets. Each sequence is displayed linearly with color codes indicating secondary structural domains. | mammal mitochondria dna, mammal mitochondria gene, mammal mitochondria trna | PMID:11073213 | SCR_015493 | Mamit-tRNA | 2026-08-08 12:04:37 | 2 | ||||||||||
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Paradigm Resource Report Resource Website 50+ mentions |
Paradigm (RRID:SCR_009634) | Paradigm | software resource | Software application for millisecond accurate experimental control for cognitive neuroscience, psychology and linguistics research. Presents text, images, sounds, movies, self-paced reading trials and rating scales. An integrated Python scripting API is available. Joystick and microphone response are available. Supports button boxes from PST, Cedrus, fORP and custom built response boxes. Paradigm can detect fMRI triggers through serial and parallel ports. Includes sample experiments that implement many of the most popular experiment designs., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | eeg, experimental control, eye tracking, hardware, microsoft, magnetic resonance, physiological recording, python, scanner, win32 (ms windows), experiment, experimental design, fmri, eye tracking device | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_155918 | SCR_009634 | Paradigm Experiment Builder | 2026-08-08 12:05:07 | 62 | |||||||
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Berkeley Drosophila Genome Project Resource Report Resource Website 100+ mentions |
Berkeley Drosophila Genome Project (RRID:SCR_013094) | BDGP, BDGP EST, BDGP INS | database, data or information resource | Database on the sequence of the euchromatic genome of Drosophila melanogaster In addition to genomic sequencing, the BDGP is 1) producing gene disruptions using P element-mediated mutagenesis on a scale unprecedented in metazoans; 2) characterizing the sequence and expression of cDNAs; and 3) developing informatics tools that support the experimental process, identify features of DNA sequence, and allow us to present up-to-date information about the annotated sequence to the research community. Resources * Universal Proteomics Resource: Search for clones for expression and tissue culture * Materials: Request genomic or cDNA clones, library filters or fly stocks * Download Sequence data sets and annotations in fasta or xml format by http or ftp * Publications: Browse or download BDGP papers * Methods: BDGP laboratory protocols and vector maps * Analysis Tools: Search sequences for CRMs, promoters, splice sites, and gene predictions * Apollo: Genome annotation viewer and editor September 15, 2009 Illumina RNA-Seq data from 30 developmental time points of D. melanogaster has been submitted to the Short Read Archive at NCBI as part of the modENCODE project. The data set currently contains 2.2 billion single-end and paired reads and over 201 billion base pairs. | drosophila genome, cdna, est, transposon insertions, genomic sequencing, gene, FASEB list |
is related to: Bgee: dataBase for Gene Expression Evolution is related to: OpenFlyData.org has parent organization: University of California at Berkeley; Berkeley; USA is parent organization of: Patterns of Gene Expression in Drosophila Embryogenesis |
NHGRI ; NIGMS |
PMID:21177961 | nif-0000-02867, r3d100010624 | http://www.bdgp.org/ | SCR_013094 | 2026-08-08 12:05:19 | 478 |
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