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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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PhenoBank Resource Report Resource Website 1+ mentions |
PhenoBank (RRID:SCR_000930) | video resource, database, data or information resource | A database that provides primary data from two high-content screens that profile the set of ~900 essential C. elegans genes (~5% of the genome) required for embryo production and/or events during the first two embryonic divisions. Phenobank houses the movies, scored defects, and phenotypic classification data for the embryo-filming and gonad morphology screens. | phenotype, data, c elegans, genome, embryo, gonad, morphology, classification | has parent organization: Max Planck Institute of Molecular Cell Biology and Genetics; Dresden; Germany | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_73232 | SCR_000930 | 2026-08-08 12:03:45 | 1 | |||||||||
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AnimalTFDB Resource Report Resource Website 100+ mentions |
AnimalTFDB (RRID:SCR_001624) | AnimalTFDB | database, data or information resource | A comprehensive transcription factor (TF) database in which they identified and classified all the genome-wide TFs in 50 sequenced animal genomes (Ensembl release version 60). In addition to TFs, it also collects transcription co-factors and chromatin remodeling factors of those genomes, which play regulatory roles in transcription. Here they defined the TFs as proteins containing a sequence-specific DNA-binding domain (DBD) and regulating target gene expression. Currently, the AnimalTFDB classifies all the animal TFs into 72 families according to their conserved DBDs. Gene lists of transcription factors, transcription co-factors and chromatin remodeling factors of each species are available for downloading., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | transcription factor, dna-binding domain, transcription co-factor, chromatin remodeling factor, gene structure, functional domain, go annotation, protein interaction, ortholog, paralog, 3d structure, pathway, protein-protein interaction, binding site, target, data set, image collection, 3d spatial image, bio.tools, FASEB list |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian is related to: Gene Ontology is related to: Ensembl has parent organization: Huazhong University of Science and Technology; Wuhan; China |
Huazhong University of Science and Technology; Wuhan; China ; Fundamental Research Funds for the Central Universities 2010MS045; National Natural Science Foundation of China 31171271 |
PMID:22080564 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_153892, OMICS_01856, biotools:animal_tfdb | https://bio.tools/animal_tfdb | SCR_001624 | Animal Transcription Factor Database | 2026-08-08 12:03:37 | 292 | ||||
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Human Gene Mutation Database Resource Report Resource Website 1000+ mentions |
Human Gene Mutation Database (RRID:SCR_001621) | HGMD | database, data or information resource | Curated database of known (published) gene lesions responsible for human inherited disease. | gene, disease, gene lesion, mutation, deletion, insertion, duplication, rearrangement, nuclear gene, functional polymorphism, bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian is related to: BIOBASE Corporation has parent organization: Cardiff University; Wales; United Kingdom |
Inherited disease | PMID:22948725 PMID:20368137 PMID:20038494 PMID:19348700 PMID:18428754 PMID:18245393 PMID:12754702 PMID:10612821 PMID:9399854 PMID:9066272 PMID:8882888 |
Free, Freely available | nlx_153887, SCR_001888, biotools:hgmd, nif-0000-10459, OMICS_00281 | http://www.hgmd.cf.ac.uk/ac/index.php, https://bio.tools/hgmd, | SCR_001621 | The Human Gene Mutation Database, The Human Gene Mutation Database at the Institute of Medical Genetics in Cardiff | 2026-08-08 12:03:37 | 2682 | ||||
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Ridom SpaServer Resource Report Resource Website 100+ mentions |
Ridom SpaServer (RRID:SCR_001460) | database, data or information resource | Database of information of spa-typing of MRSA, or Staphylococcus aureus, that can be used to collate and harmonize data from various geographic regions. | database, information, staphylococcus aureus, bacteria, mrsa, FASEB list | PMID:14662923 | Free, Available for download, Freely available | nif-0000-08852 | SCR_001460 | SpaServer | 2026-08-08 12:03:46 | 322 | ||||||||
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GTEx eQTL Browser Resource Report Resource Website 100+ mentions |
GTEx eQTL Browser (RRID:SCR_001618) | database, data or information resource | Database and browser that provides a central resource to archive and display association between genetic variation and high-throughput molecular-level phenotypes. This effort originated with the NIH GTEx roadmap project: however the scope of this resource will be extended to include any available genotype/molecular phenotype datasets. | genetic variation, high-throughput, phenotype, genotype, molecular, molecule, gene, gene expression, snp, trait, expression, quantitative trait locus, expression quantitative trait locus, genome, probe, sequence, statistics, p-value, rna-seq, array, lymphoblastoid, liver, cerebellum, frontal cortex, temporal cortex, pons, gene regulation, tissue, mrna, data set | has parent organization: NCBI | NIH Common Fund 268201000029C-4-0-2 | Free, Freely available | nlx_153884 | http://www.gtexportal.org/home/ | SCR_001618 | NCBI GTEx eQTL Browser, Genotype-Tissue Expression eQTL Browser, GTEx (Genotype-Tissue Expression) eQTL Browser, NCBI GTeX eQTL Browser | 2026-08-08 12:03:37 | 499 | ||||||
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MAboya Gene Expression Patterns and Sequence Tags Resource Report Resource Website 1+ mentions |
MAboya Gene Expression Patterns and Sequence Tags (RRID:SCR_000763) | MAGEST | database, data or information resource | A database for maternal gene expression information for ascidia, colloquially known as sea squirts. Information available includes DNA sequences, expression patterns of ESTs, and cDNA data from uncleaved fertilized eggs. The goal is to utilize the database to understand molecular mechanisms of establishment of embryonic body plans of chordates and to understand evolution from invertebrates to vertebrates in the future. | ascidia, sea squirt, development, maternal, dna, rna, genetic, chordate, vertebrae, gene, expression | has parent organization: University of Tokyo; Tokyo; Japan | Ministry of Education Science Sports and Culture Japan 1016821; Ministry of Education Science Sports and Culture Japan 11149212; Research for the Future Program from the Japan Society for the promotion of Science 96L00404 |
PMID:11752271 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-21247 | http://www.genome.ad.jp/magest | SCR_000763 | MAboya Gene Expression Patterns and Sequence Tags (MAGEST) | 2026-08-08 12:03:35 | 7 | ||||
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Neurospora crassa Database Resource Report Resource Website 1+ mentions |
Neurospora crassa Database (RRID:SCR_001372) | NCD | database, data or information resource | It's strategy involves Whole Genome Shotgun (WGS) sequencing, in which sequence from the entire genome is generated and reassembled. This method is standard for microbial genome sequencing, and has been successfully applied to Drosophila. Neurospora is an ideal candidate for this approach because of the low repeat content of the genome. Neurospora crassa Database has expanded the scope of its database by including a mitochondrial annotation, incorporating information from the Neurospora compendium, and assigning NCU numbers to tRNA and rRNAs. They have improved the annotation process to predict untranslated regions and to reduce the number of spurious predictions. As a result, version 3 contains 9,826 genes, 794 fewer than version 2. During the initial phase of a WGS project they sequence both ends of the 4 kb inserts from a plasmid library prepared using randomly sheared and sized-selected DNA. The shotgun reads are assembled by recognizing overlapping regions of sequence and making use of the knowledge of the orientation and distance of the paired reads from each plasmid. Obtaining deep sequence coverage though high levels of sequence redundancy assures that the majority of the genome is represented in the initial assembly and that the consensus sequence is of high quality. Their approach toward the initial assembly was conservative, meaning they would rather fail to join sequence contigs that might overlap each other than risk making false joins between two closely related but non-overlapping genomic regions. Hence, the initial assembly contains many sequence contigs and over time these contigs will increase in size and decrease in number as they are joined together. After shotgun sequencing and assembly there was a second phase of sequencing in which additional sequence was obtained from specific regions that were missing from the original assembly or are recognized to be of low quality in the consensus. The Neurospora crassa sequencing project reflects a close collaboration between the Broad Institute and the Neurospora research community. Principal investigators include Bruce Birren and Chad Nusbaum from the Broad Institute, Matt Sachs at the Oregon Graduate Institute of Science and Technology, Chuck Staben at the University of Kentucky and Jak Kinsey at the Fungal Genetics Stock Center at the University of Kansas Medical Center. In addition, we have a larger Advisory Board made up of a number of Neurospora researchers. Sponsors: They have been funded by the National Science Foundation to sequence the N. crassa genome and make the information publicly available. | gene, annotation, compendium, contig, distance, drosophila, genome, mitochondrial, neurospora crassa, plasmid, region, rrna, sequence, trna, untranslated | Free, Freely available, | nif-0000-20965 | http://www.broadinstitute.org/annotation/genome/neurospora/Home.html | SCR_001372 | Neurospora crassa Database | 2026-08-08 12:03:36 | 4 | |||||||
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MINT Resource Report Resource Website 1000+ mentions |
MINT (RRID:SCR_001523) | MINT | database, data or information resource | A database that focuses on experimentally verified protein-protein interactions mined from the scientific literature by expert curators. The curated data can be analyzed in the context of the high throughput data and viewed graphically with the MINT Viewer. This collection of molecular interaction databases can be used to search for, analyze and graphically display molecular interaction networks and pathways from a wide variety of species. MINT is comprised of separate database components. HomoMINT, is an inferred human protein interatction database. Domino, is database of domain peptide interactions. VirusMINT explores the interactions of viral proteins with human proteins. The MINT connect viewer allows you to enter a list of proteins (e.g. proteins in a pathway) to retrieve, display and download a network with all the interactions connecting them. | protein-protein interaction, protein, interaction, virus, peptide, organelle co-localization, pathway, molecular interaction, papillomavirus, epstein-barr virus, hepatitis b virus, hepatitis c virus, human adenovirus, human herpesvirus, human immunodeficiency virus, influenza a virus, vaccinia virus, simian virus 40, virus strains, virus protein, orthologous protein, network, proteomics, ortholog, FASEB list |
uses: IntAct uses: PSI-MI is listed by: re3data.org is affiliated with: IMEx - The International Molecular Exchange Consortium is related to: MPIDB is related to: TissueNet - The Database of Human Tissue Protein-Protein Interactions is related to: InteroPorc is related to: Interaction Reference Index is related to: Pathway Commons is related to: ConsensusPathDB is related to: VirusMINT is related to: PSICQUIC Registry is related to: Agile Protein Interactomes DataServer has parent organization: University of Rome Tor Vergata; Rome; Italy works with: IMEx - The International Molecular Exchange Consortium |
European Union ; ENFIN ; Interaction Proteome Project ; IMEx - The International Molecular Exchange Consortium ; HUPO Proteomics Standards Initiative ; AIRC Associazione Italiana per la Ricerca sul Cancro |
PMID:22096227 PMID:24234451 PMID:19897547 PMID:18592188 PMID:18551417 PMID:18428712 PMID:17135203 PMID:11911893 |
nlx_152821, r3d100010414 | https://doi.org/10.17616/R38S3B | SCR_001523 | MINT, the Molecular INTeraction database, Molecular Interactions Database, Molecular INTeraction database, MINT - the Molecular INTeraction database | 2026-08-08 12:03:37 | 1141 | |||||
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PREFAB Resource Report Resource Website 1+ mentions |
PREFAB (RRID:SCR_001009) | PREFAB | database, data or information resource | Downloadable data designed for testing multiple sequence alignment methods. | database, downloadable data, sequence alignment, sequence alignment method |
is listed by: OMICtools is listed by: SoftCite is related to: MUSCLE |
PMID:15034147 | Free, Available for download, Freely available | OMICS_00984 | SCR_001009 | PREFAB - Protein Reference Alignment Benchmark, Protein Reference Alignment Benchmark | 2026-08-08 12:03:46 | 1 | ||||||
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IFPMA Clinical Trials Portal Resource Report Resource Website |
IFPMA Clinical Trials Portal (RRID:SCR_000791) | database, data or information resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 23,2022. IFPMA Clinical Trials Portal is brought to you by IFPMA on behalf of its Member Companies and Associations. IFPMA Clinical Trials Portal ensures: a free and easy-to-use interface for patients and health professionals alike to ongoing clinical trials, clinical trial results and complementary information on related issues; non-promotional and reliable information; industry's commitment to the transparency of clinical trials. * Search by Medical Condition and Drug Name * Language Interfaces (En, Es, Fr, De, Jp) * Glossary and Easy Explanation of Medical Expressions * Geographical Search | clinical, clinical trial, pediatric, disease, cancer, hiv, aids, diabetes, heart disease | has parent organization: IFPMA - International Federation of Pharmaceutical Manufacturers and Associations | IFPMA - International Federation of Pharmaceutical Manufacturers and Associations | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-31391 | SCR_000791 | International Federation of Pharmaceutical Manufacturers and Associations Clinical Trials Portal | 2026-08-08 12:03:35 | 0 | |||||||
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Integrated Models Resource Report Resource Website |
Integrated Models (RRID:SCR_001481) | Integrated Models | database, data or information resource | A virtual database of several model resources including: CellML Model Repository, ModelDB, Open Source Brain, SimTK, and ModelRun. | model, integrated, database, nif |
is used by: NIF Data Federation lists: Simtk.org lists: ModelDB lists: Open Source Brain lists: CellML Model Repository has parent organization: Integrated |
Free, Freely available | nlx_152726 | https://legacy.neuinfo.org/mynif/search.php?q=*&t=indexable&list=cover&nif=nlx_154697-12 https://neuinfo.org/mynif/search.php?q=*&t=indexable&nif=nlx_152726-1, https://neuinfo.org/mynif/search.php?q=*&t=indexable&list=cover&nif=nlx_154697-12 | SCR_001481 | Integrated Model View, NIF Integrated Models, NIF Models, NIF Integrated Models View, Integrated Model, NIF Integrated Model | 2026-08-08 12:03:47 | 0 | ||||||
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National Science Foundation Graduate Research Fellowship Program Resource Report Resource Website 100+ mentions |
National Science Foundation Graduate Research Fellowship Program (RRID:SCR_001487) | graduate program resource, funding resource | The National Science Foundation's Graduate Research Fellowship Program (GRFP) helps ensure the vitality of the human resource base of science and engineering in the United States and reinforces its diversity. The program recognizes and supports outstanding graduate students in NSF-supported science, technology, engineering, and mathematics disciplines who are pursuing research-based master's and doctoral degrees in the U.S. and abroad. The NSF welcomes applications from all qualified students and strongly encourages under-represented populations, including women, under-represented racial and ethnic minorities, and persons with disabilities, to apply for this fellowship. Fellows share in the prestige and opportunities that become available when they are selected. Fellows benefit from a three-year annual stipend of $30,000 along with a $10,500 cost of education allowance for tuition and fees, a one-time $1,000 international travel allowance and the freedom to conduct their own research at any accredited U.S., or foreign institution of graduate education they choose. NSF Fellows are anticipated to become knowledge experts who can contribute significantly to research, teaching, and innovations in science and engineering. So that the nation can build fully upon the strength and creativity of a diverse society, the Foundation welcomes applications from all qualified individuals. Women, under-represented minorites and people with disabilities are encouraged to apply. Those with disabilities are additionally accommodated by the Foundation to provide for the most successful graduate experience possible. Sponsors: This program is supported by the National Science Foundation (NSF). | engineering, fellowship, graduate, human, mathematics, research, science, technology | Free, Freely available | nif-0000-10366 | SCR_001487 | NSF GRFP | 2026-08-08 12:03:46 | 169 | |||||||||
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Ronald M. Davis Tobacco Deposition and Trial Testimony Archive Resource Report Resource Website 1+ mentions |
Ronald M. Davis Tobacco Deposition and Trial Testimony Archive (RRID:SCR_000795) | database, data or information resource | A database of information from the Center for Tobacco Use Prevention and Research. Materials include depositions, trial testimony and opening and closing statements, expert reports, jury instructs, and verdicts. Some transcripts are rough copies and others may be marked as confidential although they no longer retain that status. This resource is in French. | tobacco, legal, testimony, trial, deposition, expert report, jury, verdicts, transcripts, center for tobacco use prevention and research, cigarettes, french | In order to access documents in this collection, users agree to certain conditions. | nif-0000-31469 | SCR_000795 | Tobacco DATTA | 2026-08-08 12:03:44 | 1 | |||||||||
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NET-PD (Neuroprotection Exploratory Trials in PD): Futility Study I Resource Report Resource Website |
NET-PD (Neuroprotection Exploratory Trials in PD): Futility Study I (RRID:SCR_001153) | database, data or information resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented August 23, 2016. This site has a dataset from a multicenter, double-blind, futility study of minocycline and creatine in subjects with early untreated Parkinson's Disease (PD) or FS-I (Futility Study I). There were 65 subjects/treatment arm with 195 total randomized subjects from approximately 42 sites in the US and Canada. A NINDS funded study. A Multicenter, Double-Blind, Futility Study of Minocycline and Creatine in subjects with early untreated Parkinson's Disease (PD) (FS-1).The primary objective of the study was to assess the impact of minocycline and creatine on the progression of PD in order to assess whether it was non-futile to proceed with further study of these agents. The progression of PD was measured by the change in total UPDRS score between the baseline visit and month 12 or the time of sufficient disability to require symptomatic therapy (last visit before subject goes on dopaminergic therapy), whichever occurs first. The additional follow-up of subjects until 18 months addressed the secondary objectives. The FS-1 study was conducted by the NINDS funded Neuroprotection Exploratory Trials in PD (NET-PD). | PMID:18520981 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-11251 | http://www.pd-doc.org/Databases/LinkedDatabases/NETPDDatabases/FS1Study/tabid/198/Default.aspx | SCR_001153 | FS-1 | 2026-08-08 12:03:46 | 0 | ||||||||
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NeuroPedia Resource Report Resource Website 10+ mentions |
NeuroPedia (RRID:SCR_001551) | NeuroPedia | database, data or information resource | A neuropeptide encyclopedia of peptide sequences (including genomic and taxonomic information) and spectral libraries of identified MS/MS spectra of homolog neuropeptides from multiple species. | proteomics, peptide, neuropeptide, mass spectrometry assay, peptide sequence, spectrum, homolog | has parent organization: Center for Computational Mass Spectrometry | NCRR P41-RR024851; NIDA 5K01DA23065; NINDS R01 NS24553; NIDA R01 DA04271; NIMH R01 MH077305; NHLBI P01 HL58120 |
PMID:21821666 | Free, Freely available | nlx_152894 | SCR_001551 | NeuroPedia: Neuropeptide database and spectra library | 2026-08-08 12:03:37 | 12 | |||||
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Earlier versus Later Levodopa Therapy in Parkinson Disease Resource Report Resource Website |
Earlier versus Later Levodopa Therapy in Parkinson Disease (RRID:SCR_001150) | database, data or information resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented August 23, 2016. This site has a dataset from the ELLDOPA study: a multicenter, placebo-controlled, randomized, dose-ranging, double-blind clinical trial of 361 early, mild Parkinson's disease (PD) subjects, not requiring symptomatic medications with a duration from time of diagnosis less than 2 years. A NINDS funded study. The multicenter, placebo-controlled, randomized, dose-ranging, double-blind clinical trial, called the Earlier versus Later Levodopa Therapy in Parkinson Disease (ELLDOPA) study was run by the Parkinson Study Group and sponsored by the National Institute of Neurological Disorders and Stroke (NINDS). The subjects (n=361) were enrolled between September 1998 and August 2001 at 33 sites in the United States and 5 sites in Canada. Despite the known benefit of levodopa in reducing the symptoms of Parkinsons disease, concern has been expressed that its use might hasten neurodegeneration. This study assessed the effect of levodopa on the rate of progression of Parkinsons disease.The primary analysis assessed the doseresponse relationship between the assigned doses and the worsening of parkinsonism, as indicated by the changes in the total score on the UPDRS between the baseline visit and week 42. Washout of study drug occurred during weeks 40-42. | ClinicalTrials.Gov: NCT00004733 | Parkinson's Disease | National Institute of Neurological Disorders and Stroke | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-11249 | http://www.pd-doc.org/Databases/LinkedDatabases/PSGDatabases/ELLDOPAStudy/tabid/161/Default.aspx | SCR_001150 | 2026-08-08 12:03:36 | 0 | |||||||
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BloodExpress Resource Report Resource Website 1+ mentions |
BloodExpress (RRID:SCR_001142) | database, data or information resource | A database of gene expression in mouse haematopoiesis, integrating 271 individual microarray experiments derived from 15 distinct studies done on most characterized mouse blood cell types. Gene expression information has been discretized to absent/present/unknown calls. It supports gene-centric searches to find out where a gene of interest is expressed, and what other genes follow the same (or a similar) pattern of expression. It also supports cell-centric searches to find out what genes are expressed in specific cell types/studies and not others. | blood, hematopoiesis, microarray, red blood cell, gene expression, expression profile, gene, cell, haematopoietic stem cell |
uses: StemBase uses: Gene Expression Omnibus has parent organization: University of Cambridge; Cambridge; United Kingdom |
Leukemia Research Foundation ; Leukemia and Lymphoma Society ; MRC |
PMID:18987008 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-02615 | SCR_001142 | Blood Express | 2026-08-08 12:03:45 | 1 | ||||||
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AffinDB Resource Report Resource Website |
AffinDB (RRID:SCR_001690) | AffinDB | database, data or information resource |
Database of affinity data for protein-ligand complexes of the Protein Data Bank (PDB) providing direct and free access to the experimental affinity of a given complex structure. Affinity data are exclusively obtained from the scientific literature. As of Thursday, May 01st, 2014, AffinDB contains 748 affinity values covering 474 different PDB complexes. More than one affinity value may be associated with a single PDB complex, which is most frequently due to multiple references reporting affinity data for the same complex. AffinDB provides access to data in three different forms: # Summary information for PDB entry # Affinity information window # Tabular reports |
protein-ligand complex, affinity |
is listed by: OMICtools is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) has parent organization: Philipps-University Marburg; Marburg; Germany |
PMID:16381925 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-02536, OMICS_01897 | http://www.agklebe.de/affinity | SCR_001690 | Affinity Database, AffinDB - Affinity Database For Protein-Ligand Complexes | 2026-08-08 12:03:37 | 0 | |||||
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LinkHub: A Semantic Web System that facilitates cross-database queries and information retrieval in proteomics Resource Report Resource Website 10+ mentions |
LinkHub: A Semantic Web System that facilitates cross-database queries and information retrieval in proteomics (RRID:SCR_001844) | database, data or information resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 23,2022. LinkHub is a software system using Semantic Web RDF that manages the graph of identifier relationships and allows exploration with a variety of interfaces. It leverages Semantic Web standards-based integrated data to provide novel information retrieval to identifier-related documents through relational graph queries, simplifies and manages connections to major hubs such as UniProt, and provides useful interactive and query interfaces for exploring the integrated data. For efficiency, it is also provided with relational-database access and translation between the relational and RDF versions. LinkHub is practically useful in creating small, local hubs on common topics and then connecting these to major portals in a federated architecture; LinkHub was used to establish such a relationship between UniProt and the North East Structural Genomics Consortium. LinkHub also facilitates queries and access to information and documents related to identifiers spread across multiple databases, acting as connecting glue between different identifier spaces. LinkHub is available at hub.gersteinlab.org and hub.nesg.org with supplement, database models and full-source code. Sponsors: Funding for this work comes from NIH/NIGMS grant P50 GM62413-01, NIH grant K25 HG02378, and NSF grant DBI-0135442. | genomics, graph query, identifier relationships, relational-database, software system | PMID:17493288 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-10406 | SCR_001844 | LinkHub | 2026-08-08 12:03:38 | 11 | ||||||||
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ProTISA Resource Report Resource Website 1+ mentions |
ProTISA (RRID:SCR_002138) | ProTISA | database, data or information resource | Database of confirmed translation initiation sites (TISs) for prokaryotic genomes. The confirmed data has supporting evidence from different sources, including experiments records in the public protein database Swiss-Prot, literature, conserved domain search and sequence alignment among orthologous genes. Combing with predictions from the-state-of-the-art TIS predictor MED-Start/MED-StartPlus (in release 1.0 & 1.2) and TriTISA (since release 1.4) and annotations on potential regulatory signals, the database can serve as a refined annotation resource for the public database RefSeq. | translation initiation site, annotation, genome |
is listed by: OMICtools has parent organization: Peking University; Beijing; China |
PMID:17942412 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_01871 | SCR_002138 | 2026-08-08 12:03:39 | 1 |
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