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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Zebrafish Neurophenome Project Database Resource Report Resource Website 1+ mentions |
Zebrafish Neurophenome Project Database (RRID:SCR_004482) | ZNP | data or information resource, service resource, storage service resource, data set, data repository | Database of neurobehavioral and physiological data of adult zebrafish models, complementing the available repositories for zebrafish genetic information, by providing a dynamic, open-access data repository of comprehensive, curated collection of results from zebrafish neurobehavioral experiments. As of May 2012, it contains over 4,500 experimental results, from over 75 unique physiological and behavioral tests and 330 different drug treatments. ZNP incorporates validated and curated data from work published in this field, to improve the accessibility of current knowledge to researchers interested in using adult zebrafish models. Overall, this program will allow investigators to rapidly review data, to direct their research using these models. Data and protocol submissions are now being accepted. | zebrafish, behavior, pharmacology, psychopharmacology, drug, adult zebrafish, phenotype, model, neurobehavior, physiology |
is listed by: 3DVC has parent organization: Tulane University School of Medicine; Louisiana; USA has parent organization: Zebrafish Neuroscience Research Consortium |
Tulane University; Louisiana; USA ; NIDA DA030900-02 |
PMID:22171801 | Open-access, Please cite | nlx_143762 | http://www.tulane.edu/%E2%88%BCznpindex/search | SCR_004482 | ZNPdb, Zebrafish Neurophenome Project, ZNP Database, Zebrafish Neurophenome Database | 2026-08-09 09:04:06 | 2 | ||||
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ngLOC Resource Report Resource Website 10+ mentions |
ngLOC (RRID:SCR_003150) | ngLOC | service resource, data analysis service, analysis service resource, software resource, production service resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 5, 2023.An n-gram-based Bayesian classifier that predicts subcellular localization of proteins both in prokaryotes and eukaryotes. The downloadable version of this software with source code is freely available for academic use under the GNU General Public License. | subcellular localization, protein, eukaryote, prokaryote, bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian |
PMID:22780965 PMID:17472741 |
THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_01629, biotools:ngloc | https://bio.tools/ngloc | SCR_003150 | ngLOC - A Bayesian method for predicting protein subcellular localization | 2026-08-09 09:03:41 | 22 | |||||
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TreeBASE Resource Report Resource Website 500+ mentions |
TreeBASE (RRID:SCR_005688) | TreeBASE | database, data or information resource, service resource, storage service resource, data repository | Repository of phylogenetic information, specifically user-submitted phylogenetic trees and the data used to generate them. TreeBASE accepts all kinds of phylogenetic data (e.g., trees of species, trees of populations, trees of genes) representing all biotic taxa. Data in TreeBASE are exposed to the public if they are used in a publication that is in press or published in a peer-reviewed scientific journal, book, conference proceedings, or thesis. Data used in publications that are in preparation or in review can be submitted to TreeBASE but will not be available to the public until they have passed peer review. | taxonomy, matrix, tree, topology, phylogeography, cladistic analysis, amino acid sequence, animal behavior, morphology, nucleotide sequence, genetics, dna, phylogeny, evolution, gene, population, web service, FASEB list |
is listed by: re3data.org is listed by: SoftCite has parent organization: NESCent - National Evolutionary Synthesis Center |
NSF DEB 9318325; NSF EF 0331654 |
Public, The community can contribute to this resource | r3d100010170, nif-0000-03587 | https://doi.org/10.17616/R3DK58 | SCR_005688 | TreeBASE - A Database of Phylogenetic Knowledge | 2026-08-09 09:04:13 | 813 | |||||
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MorphBank Resource Report Resource Website 10+ mentions |
MorphBank (RRID:SCR_003147) | Morphbank | database, data or information resource, service resource, storage service resource, image repository, data repository | An NSF supported image repository of over 374,000 high-resolution photographs of approximately 4,000 species for research and education, used largely but not exclusively in the area of biodiversity research. Images can be annotated by users and browsed by specimen, view, taxonomy, location, collection, or annotation. | anatomy, phylogenetics, taxonomy, biodiversity, image, photographic, biological specimen, biology, herbaria, botany, entomology, morphology, phylogeny, evolution |
is listed by: re3data.org has parent organization: Florida State University; Florida; USA |
NSF DBI-0446224 | Free, Freely available | nlx_156841, r3d100010566 | https://doi.org/10.17616/R30P5K | SCR_003147 | Morphbank : Biological Imaging | 2026-08-09 09:03:41 | 28 | |||||
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MRB - Mouse Resource Browser Resource Report Resource Website 1+ mentions |
MRB - Mouse Resource Browser (RRID:SCR_005961) | MRB | database, data or information resource, source code, registry, web service, software resource, data access protocol | Dynamic and interactive view of 222 world wide available mouse resources, classified in 22 categories. The massive generation of data has led to the propagation of mouse resources and databases and the concomitant need for formalized experimental descriptions, data standardization and database interoperability and integration. In this context and with these goals, information is collected through an online questionnaire and/or manual curation. All mouse resource data in MRB are broken up in four sections and presented in four tabs: * The General section/tab contains information such as URL(s), contact information, database description and categorization and related links. * The Ontologies & Standards tab indicates controlled vocabularies and data representation standards adopted by each resource, such as ontologies and minimum information standards. A hyperlink to an index of OBO and non-OBO ontologies can be found here; an index of minimum information standards can be found here. * The Technical tab holds technical information for each resource such as the server technology used, relational database management system(s) utilized, programming language(s) of implementation, schema descriptive documents or actual database dumps and most importantly information on each resource''s programmatic access, the integration and interoperability services. Additionally and through the integration with Molgenis, MRB is capable of generating a SOAP API for hosted resources. * The final section on Database Description Framework (DDF) Criteria, describes the compliance of each resource to the CASIMIR database criteria, which aim to capture key technical data about a database in a formal framework. All data in MRB are freely available to interested users through downloadable weekly database dumps. Programmatic access to some of MRB''s data is feasible via MRB''s SOAP web service. MRB is the front end of a relational, fully normalized PostgreSQL database. The source code is available under the GNU general public license (GPL) as a binary download and via cvs. | registry, experimental description, data standardization, database interoperability, integration, minimum information standard, ontology, standard | has parent organization: BSRC Al. Fleming; East Attica; Greece | European Union LSHG-CT-2006-037811 | Free, Source code is available under the GNU general public license., The community can contribute to this resource | nlx_151623 | SCR_005961 | Mouse Resource Browser (MRB), Mouse Resource Browser | 2026-08-09 09:04:13 | 2 | ||||||
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Biomedical Informatics Research Network Resource Report Resource Website 10+ mentions |
Biomedical Informatics Research Network (RRID:SCR_005163) | BIRN | database, data or information resource, service resource, atlas, storage service resource, data repository, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on February 22, 2023. National initiative to advance biomedical research through data sharing and online collaboration that provides data sharing infrastructure, software tools, strategies and advisory services. Groups may choose whether to share data internally or with external audiences. Hardware and data remain under control of individual user groups. | dti, fmri, alzheimer's disease, cognitive impairment, collaborative environment, cyberinfrastructure, data sharing, depressive disorder, information technology, infrastructure, memory dysfunction, microarray, mri, neurodegenerative disease, neuroinformatics, neuroimaging, genetics, biomedical material, neurobiology, electrophysiology, collaboration, biomedical, imaging, imaging system, biomedical engineering, brain, health |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: Biositemaps is listed by: re3data.org is listed by: DataCite has parent organization: University of Southern California; Los Angeles; USA is parent organization of: Morphometry BIRN is parent organization of: Knowledge Engineering from Experimental Design is parent organization of: Mouse Biomedical Informatics Research Network is parent organization of: NIH Topic Maps - A Topic Database of NIH Funded Grants is parent organization of: Human Imaging Database is parent organization of: Function BIRN is parent organization of: B0 and eddy current correction for DTI is parent organization of: BrainSuite is parent organization of: Open Access Series of Imaging Studies |
NIH Blueprint for Neuroscience Research ; NCRR 1U24-RR025736; NCRR U24-RR021992; NCRR U24-RR021760; NCRR 1U24-RR026057-01; NIGMS U24 GM104203 |
PMID:21515543 PMID:18348946 PMID:17238407 |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-00027, r3d100010770 | http://www.nitrc.org/projects/birn, https://doi.org/10.17616/R3F02K | http://www.birncommunity.org/, https://neuroscienceblueprint.nih.gov/factSheet/birn.htm | SCR_005163 | BIRN - The Conduit for Biomedical Research, Biomedical Informatics Research Network - The Conduit for Biomedical Research | 2026-08-09 09:04:12 | 12 | |||
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European Language Resources Association Resource Report Resource Website 1+ mentions |
European Language Resources Association (RRID:SCR_004909) | ELRA | organization portal, data or information resource, service resource, portal, newsletter | ELRA is the driving force to make available the language resources for language engineering and to evaluate language engineering technologies. In order to achieve this goal, ELRA is active in identification, distribution, collection, validation, standardization, improvement, in promoting the production of language resources, in supporting the infrastructure to perform evaluation campaigns and in developing a scientific field of language resources and evaluation. ELRA''s missions are to promote language resources for the Human Language Technology (HLT) sector, and to evaluate language engineering technologies. To achieve these two major missions, we offer a range of services, listed below and described in the Services around Language Resources section: - Identification of language resources - Promotion of the production of language resources - Production of language resources - Validation of language resources - Evaluation of systems, products, tools, etc., related to language resources - Distribution of language resources - Standardization The promotion of the production of language resources also includes our support of the infrastructure for evaluation campaigns and our support in developing a scientific field of language resources and evaluation, e.g. via the LREC conference. ELRA also regularly conducts market studies and surveys in the field of HLT, and publishes a quarterly newsletter, distributed not only to its members but also to a large number of people in the HLT community. | is parent organization of: LREC Conferences | nlx_87637 | SCR_004909 | 2026-08-09 09:04:03 | 1 | ||||||||||
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VMD Resource Report Resource Website 1+ mentions |
VMD (RRID:SCR_004905) | PAMGO_VMD, VMD | database, data or information resource, service resource, data analysis service, analysis service resource, production service resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented on July 15, 2013. Database covering a range of plant pathogenic oomycetes, fungi and bacteria primarily those under study at Virginia Bioinformatics Institute. The data comes from different sources and has genomes of 3 oomycetes pathogens: Phytophthora sojae, Phytophthora ramorum and Hyaloperonospora arabidopsidis. The genome sequences (95 MB for P.sojae and 65 MB for P.ramorum) were annotated with approximately 19,000 and approximately 16,000 gene models, respectively. Two different statistical methods were used to validate these gene models, Fickett''''s and a log-likelihood method. Functional annotation of the gene models is based on results from BlastX and InterProScan screens. From the InterProScan results, putative functions to 17,694 genes in P.sojae and 14,700 genes in P.ramorum could be assigned. An easy-to-use genome browser was created to view the genome sequence data, which opens to detailed annotation pages for each gene model. A community annotation interface is available for registered community members to add or edit annotations. There are approximately 1600 gene models for P.sojae and approximately 700 models for P.ramorum that have already been manually curated. A toolkit is provided as an additional resource for users to perform a variety of sequence analysis jobs. | microbial genome sequence, genome, genome sequence, genome model, gene, image, oomycete, fungus, bacteria, phytophthora sojae, phytophthora ramorum, hyaloperonospora arabidopsidis, plant |
is used by: NIF Data Federation is related to: AmiGO has parent organization: Virginia Polytechnic Institute and State University; Virginia; USA |
USDA Cooperative State Research Education and Extension Service 2002-35600-12747; USDA Cooperative State Research Education and Extension Service 2004-35600-15055; NSF MCB-0242131; NSF EF-0412213; NSF DBI-0211863 |
PMID:16381891 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_87328 | http://phytophthora.vbi.vt.edu | SCR_004905 | VBI Microbial Database, Virginia Bioinformatics Institute Microbial Database | 2026-08-09 09:04:03 | 8 | ||||
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Pristionchus.org Resource Report Resource Website 10+ mentions |
Pristionchus.org (RRID:SCR_003414) | database, data or information resource, service resource, data analysis service, analysis service resource, production service resource | This data resource is a genetic, molecular, and genomic toolkit that establishes one particular species, Pristionchus pacificus, as a major satellite system for evolutionary developmental biology. Users may download Pristionchus Sequences and use the Pristionchus pacificus genome browser where they may find gene or gene prediction data. Users can also use the BLAST feature, which allows users to search the assembly for position information of bacs, reads and contigs using the mapping tool. The center of the site's research is the evolutionary analysis of vulva formation. The general aim of the Department is to develop the nematode vulva as a suitable case study into the evolutionary alterations of developmental processes. By studying and comparing two distantly related species of the same phylum, such as P. pacificus and C. elegans, macroevolutionary alterations of developmental processes and mechanisms can be identified. The final goal of the Department is to achieve a comprehensive description of macro- and microevolutionary changes of developmental mechanisms at the molecular level in a phylogenetic and ecological context. | pristionchus, pristionchus pacificus, database, data analysis service, genetic toolkit, molecular toolkit, genomic toolkit | has parent organization: Max Planck Institute for Developmental Biology; Tubingen; Germany | PMID:17062617 | Free, Freely available | nif-0000-03339 | SCR_003414 | www.pristionchus.org | 2026-08-09 09:03:47 | 38 | |||||||
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HTSeq Resource Report Resource Website 5000+ mentions |
HTSeq (RRID:SCR_005514) | HTSeq | standalone software, data processing software, software application, authoring tool, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on February 28,2023. Software Python package that provides infrastructure to process data from high-throughput sequencing assays. While the main purpose of HTSeq is to allow you to write your own analysis scripts, customized to your needs, there are also a couple of stand-alone scripts for common tasks that can be used without any Python knowledge. | python, high-throughput sequencing assay, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools has parent organization: European Molecular Biology Laboratory |
DOI:10.1093/bioinformatics/btu638 | THIS RESOURCE IS NO LONGER IN SERVICE | biotools:htseq, OMICS_01053 | https://bio.tools/htseq | http://www-huber.embl.de/users/anders/HTSeq/, https://sources.debian.org/src/python3-htseq/ | SCR_005514 | HTSeq: Analysing high-throughput sequencing data with Python | 2026-08-09 09:04:15 | 8618 | ||||
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Neurobehavior Ontology Resource Report Resource Website 1+ mentions |
Neurobehavior Ontology (RRID:SCR_006201) | NBO | data or information resource, controlled vocabulary, ontology | An ontology consisting of two main components, an ontology of behavioral processes and an ontology of behavioral phenotypes. The behavioral process branch of NBO contains a classification of behavior processes complementing and extending the GO process ontology. The behavior phenotype branch of NBO consists of a classification of both normal and abnormal behavioral characteristics of organisms. The prime application of NBO is to provide the vocabulary that is required to integrate behavior observations within and across species. It is currently being applied by several model organism communities as well as in the description of human behavior-related disease phenotypes. The main ontology is available in both the OBO Flatfile Format and the Web Ontology Language (OWL). | obo, neurobehavior, behavior, phenotype, behavioral process, biology, animal, normal, abnormal, owl, genetics |
is listed by: BioPortal is listed by: OBO is listed by: Google Code is related to: Gene Ontology |
New BSD License, (Code) | nlx_151745 | http://purl.bioontology.org/ontology/NBO, http://behavior-ontology.googlecode.com/svn/trunk/behavior.owl, http://bioportal.bioontology.org/ontologies/1621 | SCR_006201 | Neurobehavior Ontology (NBO), Neuro Behavior Ontology, behavior-ontology, Behavioral Ontology | 2026-08-09 09:04:18 | 2 | ||||||
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GeneTalk Resource Report Resource Website 10+ mentions |
GeneTalk (RRID:SCR_005231) | GeneTalk | database, data or information resource, service resource, narrative resource, blog, storage service resource, portal, data repository, community building portal | A web-based tool, knowledgebase and community for analysis and interpretation of human variant files. VCFs (Variant Call Formats) are preprocessed and annotated, you can filter them, access all databases and provide your expertise to the community by creating annotations. | sequence variant, annotation, exome sequencing, genetic variant, gene, data sharing, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools |
PMID:22826540 | The community can contribute to this resource, Free, (during beta period) | OMICS_00270, biotools:genetalk | https://bio.tools/genetalk | SCR_005231 | GeneTalk - The Professional Network and Online Tool for Geneticists | 2026-08-09 09:04:04 | 31 | |||||
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SEER Datasets and Software Resource Report Resource Website 10+ mentions |
SEER Datasets and Software (RRID:SCR_003293) | data or information resource, topical portal, portal, disease-related portal, software resource | Portal provides SEER research data and software SEER*Stat and SEER*Prep. SEER incidence and population data associated by age, sex, race, year of diagnosis, and geographic areas can be used to examine stage at diagnosis by race/ethnicity, calculate survival by stage at diagnosis, age at diagnosis, and tumor grade or size, determine trends and incidence rates for various cancer sites over time. SEER releases new research data every Spring based on the previous November’s submission of data. | NCI, cancer, statistics, epidemiology, analysis |
lists: SEER*Stat lists: NCI SEER Cancer Stage Variable Documentation is related to: Surveillance Epidemiology and End Results has parent organization: National Cancer Institute |
cancer | NCI | Free, Freely available | nif-0000-31490 | SCR_003293 | The Surveillance Epidemiology and End Results (SEER) Program, SEER Datasets Software, SEER Datasets & Software, The Surveillance Epidemiology and End Results (SEER) Program of the National Cancer Institute | 2026-08-09 09:03:43 | 28 | ||||||
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GBIF - Global Biodiversity Information Facility Resource Report Resource Website 1000+ mentions |
GBIF - Global Biodiversity Information Facility (RRID:SCR_005904) | GBIF | organization portal, portal, data or information resource, data set | The Global Biodiversity Information Facility (GBIF) was established by governments in 2001 to encourage free and open access to biodiversity data, via the Internet. Through a global network of countries and organizations, GBIF promotes and facilitates the mobilization, access, discovery and use of information about the occurrence of organisms over time and across the planet. GBIF provides three core services and products: # An information infrastructure an Internet-based index of a globally distributed network of interoperable databases that contain primary biodiversity data information on museum specimens, field observations of plants and animals in nature, and results from experiments so that data holders across the world can access and share them # Community-developed tools, standards and protocols the tools data providers need to format and share their data # Capacity-building the training, access to international experts and mentoring programs that national and regional institutions need to become part of a decentralized network of biodiversity information facilities. GBIF and its many partners work to mobilize the data, and to improve search mechanisms, data and metadata standards, web services, and the other components of an Internet-based information infrastructure for biodiversity. GBIF makes available data that are shared by hundreds of data publishers from around the world. These data are shared according to the GBIF Data Use Agreement, which includes the provision that users of any data accessed through or retrieved via the GBIF Portal will always give credit to the original data publishers. * Explore Species: Find data for a species or other group of organisms. Information on species and other groups of plants, animals, fungi and micro-organisms, including species occurrence records, as well as classifications and scientific and common names. * Explore Countries: Find data on the species recorded in a particular country, territory or island. Information on the species recorded in each country, including records shared by publishers from throughout the GBIF network. * Explore Datasets: Find data from a data publisher, dataset or data network. Information on the data publishers, datasets and data networks that share data through GBIF, including summary information on 10028 datasets from 419 data publishers. | biodiversity, organism, species, country, FASEB list |
is listed by: DataCite is listed by: re3data.org is listed by: FAIRsharing is related to: Pensoft is related to: Australian Antarctic Data Centre is parent organization of: Atlas of Living Australia |
Free and open access - users of any data accessed through or retrieved via the GBIF Portal will always give credit to the original data publishers. | DOI:10.15469, DOI:10.26161, DOI:10.17616/R3J014, DOI:10.15468, DOI:10.35035, nlx_149475, DOI:10.25504/FAIRsharing.zv11j3 | https://doi.org/10.17616/R3J014, https://doi.org/10.17616/r3J014, https://doi.org/10.15469/, https://doi.org/10.15468/, https://doi.org/10.26161/, https://doi.org/10.35035/, https://dx.doi.org/10.15469/, https://dx.doi.org/10.15468/, https://doi.org/10.26161, https://dx.doi.org/10.35035/, https://fairsharing.org/10.25504/FAIRsharing.zv11j3 | SCR_005904 | GBIF Data Portal, Global Biodiversity Information Facility | 2026-08-09 09:04:17 | 2519 | ||||||
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Zebrafish International Resource Center Resource Report Resource Website 100+ mentions |
Zebrafish International Resource Center (RRID:SCR_005065) | ZIRC | material resource, biomaterial supply resource, organism supplier | Center that supplies access to wild-type, mutant, and transgenic zebrafish lines, EST's/cDNAs, antibodies and fish health services. ZIRC Health Services include diagnostic pathology testing for zebrafish and other small laboratory fish species. | RIN, Resource Information Network, zebrafish line, expressed sequence tag, cdna, fish, antibody, pathology, research, embryo, adult, RRID Community Authority |
is used by: Integrated Animals is listed by: One Mind Biospecimen Bank Listing is listed by: Resource Information Network is related to: One Mind Biospecimen Bank Listing is related to: ZMP is related to: NIF Data Federation is related to: Zebrafish Information Network (ZFIN) is related to: zfishbook has parent organization: University of Oregon; Oregon; USA |
NICHD HD12546; NCRR RR12546; W.M. Keck Foundation ; NIH Office of the Director P40 OD011021 |
Restricted | nif-0000-00242 | http://zebrafish.org/home/guide.php | SCR_005065 | Zebrafish International Resource Center | 2026-08-09 09:04:06 | 461 | |||||
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F1000 Posters Resource Report Resource Website 1+ mentions |
F1000 Posters (RRID:SCR_006503) | F1000 Posters, F1000Posters | storage service resource, data or information resource, service resource, narrative resource | An open access repository of conference posters from across the life sciences and medicine. It provides a permanent, structured environment for the deposition of posters as well as a trustworthy venue for ongoing discussion and development of the information being presented. You can browse posters by Topic or Section or by conference. Please note that most posters on this site present work that is preliminary in nature and has not been peer reviewed. The most interesting posters are selected for evaluation by our expert Faculty and you will receive ideas and feedback. Widen your audience ����?? top performing posters receive 800+ views in a month! | poster, slide |
is used by: NIF Data Federation has parent organization: F1000: Faculty of 1000 Post-Publication Peer Review |
Creative Commons Attribution-NonCommercial License | nlx_20701 | http://posters.f1000.com/, http://posters.f1000.com/posters | SCR_006503 | Faculty of 1000 Posters, F1000 Posters: The Open Poster Repository for Biology and Medicine | 2026-08-09 09:04:24 | 1 | ||||||
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qrqc Resource Report Resource Website 1+ mentions |
qrqc (RRID:SCR_006867) | qrqc | data analysis software, data processing software, software application, sequence analysis software, software resource | Software R package to quickly scan reads and gather statistics on base and quality frequencies, read length, k-mers by position, and frequent sequences. Produces graphical output of statistics for use in quality control pipelines, and an optional HTML quality report. S4 SequenceSummary objects allow specific tests and functionality to be written around the data collected. | Quickly scan reads, read length, k-mers, position, frequent sequences, quality control pipeline, HTML quality report, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools |
Free, Available for download, Freely available | biotools:qrqc, OMICS_01071 | https://github.com/vsbuffalo/qrqc, https://bio.tools/qrqc | SCR_006867 | quick read quality control, Quick Read Quality Control | 2026-08-09 09:04:33 | 2 | ||||||
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SPM Resource Report Resource Website 5000+ mentions Issue |
SPM (RRID:SCR_007037) | SPM | data analysis software, data processing software, software application, image analysis software, software resource | Software package for analysis of brain imaging data sequences. Sequences can be a series of images from different cohorts, or time-series from same subject. Current release is designed for analysis of fMRI, PET, SPECT, EEG and MEG. | analysis, brain, imaging, data, sequence, fMRI, PET, SPECT, EEG, MEG, bio.tools |
uses: Neuroimaging Data Model uses: imcalc: SPM batch image calculator is used by: rsfMRI_fconn calculation is used by: Automatic Analysis is used by: auto_acpc_reorient is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: 3DVC is listed by: Debian is listed by: bio.tools is listed by: SoftCite is affiliated with: Clinical Toolbox for SPM is affiliated with: Statistical non-Parametric Mapping is related to: WFU Biological Parametric Mapping Toolbox is related to: vis: SPM Visualized Statistics toolbox is related to: LEAD-DBS is related to: CCHMC Pediatric Brain Templates is related to: IBMA toolbox is related to: ArtRepair for robust fMRI is related to: ASL data processing tool box is related to: BrainVISA / Anatomist is related to: MRIcro Software is related to: xjView: A Viewing Program For SPM is related to: BrainMagix SPM Viewer is related to: MarsBaR region of interest toolbox for SPM is related to: NIRS-SPM is related to: SPM SS - fMRI functional localizers is related to: Wisconsin White Matter Hyperintensities Segmentation Toolbox is related to: Dementia-specific FDG PET Template for SPM analyses is related to: SPM Anatomy Toolbox is related to: MIPAV: Medical Image Processing and Visualization is related to: MATLAB is related to: hMRI-toolbox is related to: Sandwich Estimator Toolbox has parent organization: University College London; London; United Kingdom is required by: MRTool provides: TSDiffAna has plug in: ICN_Atlas works with: UManitoba - JHU Functionally Defined Human White Matter Atlas works with: NIAG Addiction Data works with: ICN_Atlas works with: spm_auto_reorient_coregister works with: Computational Anatomy Toolbox for SPM works with: FieldTrip works with: POAS4SPM |
Free, Available for download, Freely available | biotools:SPM | https://github.com/spm/spm12, https://bio.tools/SPM | https://www.fil.ion.ucl.ac.uk/spm/ | SCR_007037 | Statistical Parametric Mapping, SPM5, SPM2, SPM12, Statistical Parametric Mapping Software, SPM99, SPM8, SPM, SPM96 | 2026-08-09 09:04:33 | 8748 | |||||
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Enzyme Nomenclature Resource Report Resource Website 50+ mentions |
Enzyme Nomenclature (RRID:SCR_006583) | Enzyme Nomenclature | database, data or information resource, service resource, narrative resource, storage service resource, data set, data repository, international standard specification, standard specification | Recommendations of the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology on the nomenclature and classification of enzymes by the reactions they catalyze. Also included are links to individual documents and advice is provided on how to suggest new enzymes for listing, or correction of existing entries. The common names of all listed enzymes are listed, along with their EC numbers. Where an enzyme has been deleted or transferred to another EC number, this information is also indicated. Each list is linked to either separate entries for each entry or to files with up to 50 enzymes in each file. A start has been made in showing the pathways in which enzymes participate. For other enzymes a glossary entry has been added which may be just a systematic name or a link to a graphic representation. The glossary from Enzyme Nomenclature, 1992 may also be consulted. This has been updated with subsequent glossary entries. Each enzyme entry has links to other databases. Enzyme Subclasses provide links to a list of sub-subclasses which in turn list the enzymes linked to separate files for each enzyme, or to a list as part of a file with up to 50 enzymes per file. | enzyme category, enzyme classification, enzyme nomenclature, enzyme reaction category, enzyme, classification, nomenclature, pathway, gold standard, FASEB list |
is related to: ENZYME has parent organization: Queen Mary University of London; London; United Kingdom |
nif-0000-02804 | SCR_006583 | 2026-08-09 09:04:29 | 54 | |||||||||
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National Resource for Aplysia Resource Report Resource Website 10+ mentions |
National Resource for Aplysia (RRID:SCR_008361) | National Resource for Aplysia | material resource, biomaterial supply resource, organism supplier | Center where Aplysia californica are cultured and raised for research purposes. Aplysia from the facility serve in research on genomics, human brain function, toxicology for developmental studies, natural products, chemistry for isolation of novel anti-tumor and antibacterial compounds, in the study of transport by digestive tissues and have potential for use in studies of substance addiction and nerve senescence and regeneration. | disease, genomics, aplysia californica, research, brain | has parent organization: University of Miami; Florida; USA | NIH Office of the Director P40 OD010952; NCRR |
nif-0000-25472 | http://aplysia.miami.edu/ | SCR_008361 | 2026-08-09 09:04:58 | 14 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the RRID Resources search. From here you can search through a compilation of resources used by RRID and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that RRID has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on RRID then you can log in from here to get additional features in RRID such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into RRID you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
