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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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cellxgene Resource Report Resource Website 50+ mentions |
cellxgene (RRID:SCR_021059) | software resource, software application, data visualization software, data processing software | Software tool as interactive explorer for single cell transcriptomics datasets. Used to explore and visualize high dimensional single cell datasets in interactive way. Can visualize gene expression at level of entire dataset or particular subset of cells to help identify cell types, which can in turn help identify diseases. Enables plotting gene expression level against another gene to compare how these different genes are expressed across dataset. Open source cell visualization tool integrates with tools like SciPy and Jupyter. | Single cell transcriptomics datasets explorer, gene expression visualization, identify cell types, identify diseases, plotting gene expression level |
is used by: BICCN is related to: Allen Institute for Brain Science |
Free, Available for download, Freely available | https://github.com/chanzuckerberg/cellxgene | SCR_021059 | 2026-08-08 12:02:00 | 82 | |||||||||
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BioSpherix: Oxycycler GT4181C Controller Resource Report Resource Website 1+ mentions |
BioSpherix: Oxycycler GT4181C Controller (RRID:SCR_021111) | GT4181C | instrument resource | Carbon Monoxide, O2, and CO2 controller that also features limit control of relative humidity and monitoring of temperature conditions when used in combination with C-Chamber Incubator Subchamber from BioSpherix. This system also features secondary monitor for Carbon Monoxide and may be used in combination with I-Hood Incubator Hood from BioSpherix for ventilating fumes. | Carbon Monoxide, O2, CO2, controller, relative humidity limit control, temperature monitoring, instrument, equipment, USEDit | Commercially available | SCR_021111 | CO2, Oxycycler GT4181C Dynamic O2, OxyCycler GT4181C, and Carbon Monoxide Subchamber Controller System | 2026-08-08 12:02:08 | 1 | |||||||||
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BioSpherix: OxyCycler GT41 Controller Resource Report Resource Website |
BioSpherix: OxyCycler GT41 Controller (RRID:SCR_021110) | GT41 | instrument resource | O2 and CO2 controller that also features relative humidity limit control and monitoring of temperature conditions when used in combination with C-Chamber Incubator subchamber from BioSpherix. | Relative humidity limit control, temperature conditions monitoring, instrument, equipment, USEDit | Commercially available | SCR_021110 | CO2, OxyCycler GT41, and RH Subchamber Controller System, OxyCycler GT41 Dynamic O2 | 2026-08-08 12:02:08 | 0 | |||||||||
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BioSpherix: OxyCycler C42 Controller Resource Report Resource Website |
BioSpherix: OxyCycler C42 Controller (RRID:SCR_021109) | C-42 | instrument resource | Incubator controls dynamic or static levels of O2 and CO2 and offers O2 and CO2 profiling. Dual channel and dual gas controller for incubators and C-Chambers. Oxygen and carbon dioxide control is managed via independently programmable channels for optimum control. Applications of OxyCycler C42 incubator controller include intermittent hypoxia, graded hypoxia, and timed hyperoxia.Comes with computer software for easy interface, real time trend charting, data logging, and remote operation. | BioSpherix Ltd, incubator controller, O2 profiling, CO2 profiling, C-Chamber controller, intermittent hypoxia, graded hypoxia, timed hyperoxia, instrument, equipment, USEDit | Commercially available | SCR_021109 | OxyCycler C42 Dynamic O2 and CO2 Subchamber Controller, OxyCycler C42 | 2026-08-08 12:02:01 | 0 | |||||||||
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Advent research materials LTD Resource Report Resource Website 1+ mentions |
Advent research materials LTD (RRID:SCR_021045) | commercial organization | Supplier of high purity metals, alloys and polymers including Aluminium, Indium, Platinum, Silver, Gold, Copper, Indium, Iridium, Rhodium and Tantalum in multiple forms, dimensions and purities. | High purity metals, alloys, polymers, Aluminium, Indium, Platinum, Silver, Gold, Copper, Indium, Iridium, Rhodium, Tantalum | SCR_021045 | 2026-08-08 12:02:07 | 1 | ||||||||||||
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ISCAN: ETL-200 Primate Eye Tracking Laboratory Resource Report Resource Website 1+ mentions |
ISCAN: ETL-200 Primate Eye Tracking Laboratory (RRID:SCR_021044) | instrument resource | Images and tracks one eye of human subject or lower animal at operator selected sampling rate at 120 Hz or 240 Hz. Contains all components to record eye movements as subject views imagery presented on computer screen or other visual display device. Configured to track one eye and allows for up to approximately one to two inches of side to side or up and down head movement. | One eye tracking, one eye image, primate eye tracking, human subject, lower animal, record eye movements, instrument, equipment, USEDit | Commercially available | Model_Number_ETL-200 | SCR_021044 | ETL-200 Primate Eye Tracking Laboratory, ETL-200, ISCAN ETL-200 | 2026-08-08 12:02:07 | 2 | |||||||||
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Sutter: P-1000 Next Generation Micropipette Puller Resource Report Resource Website 10+ mentions |
Sutter: P-1000 Next Generation Micropipette Puller (RRID:SCR_021042) | instrument resource | P-1000 include diagnostic testing of all puller components, built in error detection of air pressure loss or filament burnout, easy access to ramp test, measurement of jaw temperature, and access to previous pull results with heat on times for each cycle of program.Help topics are pre-loaded to assist with on-site troubleshooting and built-in glossary includes text, pictures, and diagrams explaining terms used in micropipette fabrication. Rotary dial is offered as alternative to keypad for numerical entry. | Micropipette puller, instrument, equipment, USEDit | Commercially available | Model_Number_P1000 | SCR_021042 | 2026-08-08 12:02:06 | 17 | ||||||||||
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Molecular Devices: MultiClamp 700A Microelectrode Amplifier Resource Report Resource Website 1+ mentions |
Molecular Devices: MultiClamp 700A Microelectrode Amplifier (RRID:SCR_021040) | instrument resource | Computer controlled microelectrode current and voltage clamp amplifier for electrophysiology and electrochemistry. It is a versatile instrument capable of single-channel and whole-cell voltage clamping, current clamping, ionselective electrode recording, voltammetry and amperommetry. | Clamp amplifier, electrophysiology, electrochemistry, microelectrode amplifier, instrument, equipment, USEDit | Commercially available | Model_Number_MultiClamp_700A | SCR_021040 | MultiClamp 700A | 2026-08-08 12:01:59 | 4 | |||||||||
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Campden Instruments Ceramic Blades Resource Report Resource Website 1+ mentions |
Campden Instruments Ceramic Blades (RRID:SCR_021036) | instrument resource | Specialized Ceramic blades for Campden Vibrating Microtomes. These blades are honed with single bevel for superior slicing, particularly in tissue from older animals. They also work with the VT100S, Leica Biosystems. | Campden Instruments Ltd., ceramic blades, vibrotome blades, instrument, equipment, USEDit | Model_Number_ 75501C | SCR_021036 | Ceramic Blades Campden Instruments, Ceramic Blades | 2026-08-08 12:02:06 | 1 | ||||||||||
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Harvard Apparatus Resource Report Resource Website 1+ mentions |
Harvard Apparatus (RRID:SCR_021037) | commercial organization | Major US manufacturer of specialized physiological research laboratory equipment with current headquarters in Holliston, Massachusetts.Now part of Harvard Bioscience family of companies. | Specialized physiological research, laboratory equipment | SCR_021037 | 2026-08-08 12:02:07 | 5 | ||||||||||||
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spdurl Resource Report Resource Website 1+ mentions |
spdurl (RRID:SCR_020992) | software resource | Software tool as Javascript encoder and decoder to use spectral power distributions in URL. | Spectral power distribution, encoder, decoder | Free, Available for download, Freely available | https://www.npmjs.com/package/spdurl | SCR_020992 | spectral power distribution url | 2026-08-08 12:01:58 | 1 | |||||||||
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Fluigent: Flow Unit Resource Report Resource Website |
Fluigent: Flow Unit (RRID:SCR_021144) | instrument resource | Flow sensor for use with any flow control system. Unit to monitor flow rates in any microfluidic system with precision and accuracy. | Flow rate platform, Fluigent, flow sensor, flow control, flow rate monitor, microfluidic system, instrument, equipment, USEDit | is listed by: USEDit | Commercially available | SCR_021144 | 2026-08-08 12:02:08 | 0 | ||||||||||
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Fluigent: Flow EZ Resource Report Resource Website 1+ mentions |
Fluigent: Flow EZ (RRID:SCR_021145) | instrument resource | System for pressure based flow control. Enables to control or monitor flow rate as well as dispense volume. When combined with LINK module capabilities are extended by using Fluigent software to benefit from automation or live monitoring and recording of data. Flow EZ modules, are available in different pressure and vacuum ranges. | Pressure based flow control, flow rate monitor, instrument, equipment, USEDit | is listed by: USEDit | Commercially available | Model_Number_Flow EZ | SCR_021145 | Flow EZ, Flow EZ module, LINEUP FLOW EZ | 2026-08-08 12:02:01 | 1 | ||||||||
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Fluigent: LineUp LINK Resource Report Resource Website |
Fluigent: LineUp LINK (RRID:SCR_021143) | instrument resource | Provides connection of LineUp series modules to PC for software control to use Fluigent Software. | Software control connection, LineUp series modules connection, PC software control, instrument, equipment, USEDit | is listed by: USEDit | Commercially available | SCR_021143 | LineUp LINK | 2026-08-08 12:02:01 | 0 | |||||||||
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volBrain Resource Report Resource Website 1+ mentions |
volBrain (RRID:SCR_021020) | software resource | Software tool as MRI brain segmentation system to obtain automatically volumetric brain information from RI data. Works in automatic manner and is able to provide brain structure volumes without any human interaction. | MRI brain volumetry system, segmentation system, volumetric brain information, MRI data, | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | PMID:27512372 | Free, Available for download, Freely available | SCR_021020 | volBrain: online MRI segmentation, MRI Brain Volumetry System | 2026-08-08 12:02:07 | 3 | ||||||||
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Innovadyne Technologies: Nanodrop 2 Pipetting System Resource Report Resource Website |
Innovadyne Technologies: Nanodrop 2 Pipetting System (RRID:SCR_021033) | instrument resource | Liquid handling system designed for high precision pipetting. | Commercially available | SCR_021033 | 2026-08-08 12:01:59 | 0 | ||||||||||||
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Phantom: Miro C110 camera Resource Report Resource Website |
Phantom: Miro C110 camera (RRID:SCR_021081) | instrument resource | Small, sturdy camera with all standard Phantom features and image quality. Memory can be partitioned up to 63 times to deliver images from 1.3 Mpx sensor with 12-bit depth and tightly packed 5.6 micron pixel size. Miro C110 is capable of 1295 fps at 720p HD and up to 52445 fps at reduced resolutions. | small camera, Phantom, image quality, instrument, equipment, USEDit | Commercially available | Model_Number_Micro_C110 | SCR_021081 | Phantom Miro C110 | 2026-08-08 12:02:08 | 0 | |||||||||
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BioSpherix: C Shuttle Glove Box hood Resource Report Resource Website |
BioSpherix: C Shuttle Glove Box hood (RRID:SCR_021082) | C-Shuttle | instrument resource | Oxygen controlled hood for handling cells under physiologic or pathophysiologic conditions. Double door entry allows import/export of materials without perturbation of experimental conditions. Optional control of carbon dioxide as well. Receives C-Chamber Incubator Subchamber to transfer cells without exposure to room air. | BioSpherix, Physioxia, Physioxic, Hypoxia, Hypoxic, Glove box, oxygen, cell culture hood, carbon dioxide, instrument, equipment, USEDit | Commercially available | SCR_021082 | BioSpherix C-Shuttle Glove Box, Hypoxic Glove Box, C-Shuttle laboratory glove box | 2026-08-08 12:02:00 | 0 | |||||||||
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Anton Paar: MCR501 rheometer Resource Report Resource Website 1+ mentions |
Anton Paar: MCR501 rheometer (RRID:SCR_021122) | instrument resource | Stress controlled rheometer.THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 19,2026. | Stress controlled rheometer, rheometer, instrument, equipment, USEDit | is organization facet of: Anton Paar | THIS RESOURCE IS NO LONGER IN SERVICE. | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_021122.pdf | Model_Number_MCR501 | SCR_021122 | SMaRT – MCR501, , Modular Compact Rheometer 501, SMaRT – MCR501 (Anton Paar) | 2026-08-08 12:02:01 | 1 | |||||||
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ALLMAP Resource Report Resource Website 1+ mentions |
ALLMAP (RRID:SCR_021120) | software resource | Software tool for computing scaffold ordering that maximizes colinearity across collection of maps including genetic, physical or comparative maps into final chromosome build. Robust scaffold ordering based on multiple maps. ALLMAPS is robust against common mapping errors, and generates sequences that are maximally concordant with input maps. Used in building high quality genome assemblies. | Computing scaffold ordering, colinearity across map collection maximization, final chromosome build, robust scaffold ordering, multiple maps, common mapping errors, genome assemblies | Gordon and Betty Moore Foundation ; National Science Foundation |
DOI:10.1186/s13059-014-0573-1 | Free, Available for download, Freely available | SCR_021120 | 2026-08-08 12:02:08 | 1 |
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