Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
DRC - Database of Ribosomal Crosslinks Resource Report Resource Website |
DRC - Database of Ribosomal Crosslinks (RRID:SCR_007628) | DRC | database, data or information resource | A database of published cross-link data of the E. coli ribosome. The website provides information on rRNA-rRNA cross-links, rRNA-rProteins cross-links, cross-links between ribosomal proteins, tRNA-ribosome cross-links, growing peptide-ribosome cross-links, factors-ribosome cross-links, and mRNA-ribosome cross-links. All data are presented in tables. | e coli, escheria coli, factors-ribosome cross-links, cross-links between ribosomal proteins, growing peptide-ribosome cross-links, mrna-ribosome cross-links, ribosome, rrna-rproteins cross-links, rrna-rrna cross-links, trna-ribosome cross-links | is listed by: 3DVC | nif-0000-02766 | http://www.mpimg-berlin-dahlem.mpg.de/~ag_ribo/ag_brimacombe/drc/ | SCR_007628 | 2026-08-08 12:04:10 | 0 | ||||||||
|
Defensins Knowledgebase Resource Report Resource Website 1+ mentions |
Defensins Knowledgebase (RRID:SCR_007623) | database, data or information resource | The defensins knowledgebase is a manually curated database and information source devoted to the defensin family of antimicrobial peptides. The current version of the database holds a comprehensive collection of 363 defensin records each containing sequence, structure and activity information. A web-based interface provides access to the information and allows for text-based searching on the data fields. With the rapidly increasing interest in defensins, we hope that the knowledgebase will prove to be a valuable resource in the field of antimicrobial peptide research. | antimicrobial peptide, defensin | has parent organization: Agency for Science Technology and Research | nif-0000-02744 | SCR_007623 | Defensins Knowledgebase | 2026-08-08 12:04:10 | 4 | |||||||||
|
DataBase of Tunicate Gene Regulation Resource Report Resource Website 1+ mentions |
DataBase of Tunicate Gene Regulation (RRID:SCR_007620) | database, data or information resource | DBTGR provides information on tunicate gene regulation, such as the location of expression, or the identified regulatory elements present in promoter sequences. The database also contains the promoters of homologous genes in multiple species to allow identification of conserved cis elements. | promoter sequence, regulatory element, regulatory system, tunicate, tunicate gene expression reporter vector | has parent organization: University of Tokyo; Tokyo; Japan | nif-0000-02737 | SCR_007620 | DBTGR | 2026-08-08 12:04:14 | 1 | |||||||||
|
Dragon Database for Exploration of Ovarian Cancer Genes Resource Report Resource Website 1+ mentions |
Dragon Database for Exploration of Ovarian Cancer Genes (RRID:SCR_007621) | database, data or information resource | :DDOC provides a comprehensive compilation of the published research related to the genes associated with ovarian cancer. DDOC provides details of the cell line, tissue or cell type, expression status, disease stage, tumor grade, OC type and laboratory method provided in the literature. The links to the relevant sources of data used to extract information related to genes are also included. Many aspects of the information provided in the DDOC were curated by biologists, which increases its accuracy. DDOC is freely accessible for academic and non-profit users. | ovarian cancer, ovarian cancer cell line, ovarian cancer gene, ovarian cancer stages, ovarian tissue | nif-0000-02742 | SCR_007621 | DDOC | 2026-08-08 12:04:06 | 5 | ||||||||||
|
dbPTM: An informational repository of proteins and post-translational modifications Resource Report Resource Website 100+ mentions |
dbPTM: An informational repository of proteins and post-translational modifications (RRID:SCR_007619) | database, data or information resource | dbPTM is a database that compiles information on protein post-translational modifications (PTM) such as the modified sites, solvent accessibility of surrounding amino acids, protein secondary and tertiary structures, protein domains, and protein variations. The version 2.0 of dbPTM integrates the experimentally validated PTM sites with referable literatures from Swiss-Prot, Phospho.ELM, O-GLYCBASE, and UbiProt. In all of the collected PTM information, about 25 types of PTM with enough experimentally validated sites are trained the profile hidden Markov models (HMMs) to detect the potential PTM sites with 100% specificity against Swiss-Prot proteins. To help users investigating more detail in each type of PTM, the substrate peptide specificity such as positional amino acid frequency, solvent accessibility and secondary structure surrounding the modified sites are also provided. Moreover, the information of orthologous protein clusters is provided to users for analyzing whether the PTM sites located in the evolutionary conserved regions or not., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | protein, protein post-translational modification, ptm | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-02730 | SCR_007619 | dbPTM | 2026-08-08 12:04:05 | 114 | |||||||||
|
FLAGdb++ Resource Report Resource Website 1+ mentions |
FLAGdb++ (RRID:SCR_007659) | database, data or information resource | A database for the functional analysis of the Arabidopsis genome. The ultimate objective of this project is to develop a database and associated bioinformatics tools based on the integration of genomic data around a selection of plant complete genomes. This tool will help users to understand the biological role of plant genes by considering them in a wide context: a multigene family, a topological environment, and/or a functional network. The database and the associated user-friendly interface is developed with a conceptual effort for the graphical display and the hierarchical organization of the data. The running integration involves the structural and functional international annotations, EST from different plant species, novel gene predictions, mutant tags, gene families, protein motifs, transcriptome data, repeat sequences, primers and tags for genomic approaches (DNA chips, synteny studies, BAC library screening, RT-PCR, SNP discovery, ...), subcellular targeting, secondary structures, 3D models, MPSS tags, curated annotations and mutant phenotypes. | arabidopsis, arabidopsis genome, plant genome | nif-0000-02840 | SCR_007659 | FLAGdb++ | 2026-08-08 12:04:11 | 9 | ||||||||||
|
F-SNP: a collection of functional SNPs, specifically prioritized for disease association studies Resource Report Resource Website 100+ mentions |
F-SNP: a collection of functional SNPs, specifically prioritized for disease association studies (RRID:SCR_007653) | database, data or information resource | F-SNP database provides integrated information about the functional effects of SNPs obtained from 16 bioinformatics tools and databases. The functional effects are predicted and indicated at the splicing, transcriptional, translational, and post-translational level. As such, the F-SNP database helps identify and focus on SNPs with potential pathological effect to human health. Users can find SNP's based on ID, associated disease, gene, or chromosomal region. | functional snp, disease-associated snp, snp, snp functional effect, snp pathogenicity, FASEB list | has parent organization: Queens University; Ontario; Canada | nif-0000-02832 | SCR_007653 | F-SNP | 2026-08-08 12:04:11 | 131 | |||||||||
|
EXProt- database for EXPerimentally verified Protein functions Resource Report Resource Website 10+ mentions |
EXProt- database for EXPerimentally verified Protein functions (RRID:SCR_007652) | database, data or information resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented August 23, 2016. EXProt (database for EXPerimentally verified Protein functions) is a new non-redundant database containing protein sequences for which the function has been experimentally verified. EXProt is a selection of 6491 entries which are described to have an experimentally verified function. The entries in EXProt all have a unique ID number and provide information about organism, protein sequence, functional annotation, link to entry in original database, and if known, gene name and link to references in PubMed. The EXProt database can be searched with BLAST or FASTA with amino acid or nucleotide sequence as query sequence. Note that only the sequence goes into the field. EXProt database is also searchable in SRS6 at CMBI. In a near future entries from the genome project of Lactobacillus plantarum by Wageningen Centre for Food Sciences (WCFS) will be added to EXProt. | protein function, protein sequence | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-02828 | SCR_007652 | EXProt | 2026-08-08 12:04:15 | 15 | |||||||||
|
FireDB Resource Report Resource Website 1+ mentions |
FireDB (RRID:SCR_007655) | FireDB | database, data or information resource | A database of Protein Data Bank structures, ligands and annotated functional site residues. The database can be accessed by PDB codes or UniProt accession numbers as well as keywords. FireDB contains information on every chemical compound in the PDB, including their descriptions, the PDB structures in which the compounds are found and the amino acids that are in contact with the ligand. | protein, protein structure, pdb, bio.tools |
uses: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) is listed by: bio.tools is listed by: Debian has parent organization: Spanish National Cancer Research Center |
nif-0000-02839, biotools:firedb | https://bio.tools/firedb | SCR_007655 | 2026-08-08 12:04:11 | 7 | ||||||||
|
Functional Coverage of the Proteome Resource Report Resource Website 1+ mentions |
Functional Coverage of the Proteome (RRID:SCR_007654) | database, data or information resource | FCP is a publicly accessible web tool dedicated to analyzing the current state and trends of available proteome structures along the classification schemes of enzymes and nuclear receptors. It offers both graphical and quantitative data on the degree of functional coverage in that portion of the proteome by existing structures and on the bias observed in the distribution of those structures among proteins. Users can choose to search the website based on structures or ligands, and can also sort by enzyme or receptor. Users can also view data based on structural and population (species) filters. | enzyme, nuclear receptor, protein, proteome, proteome structure | has parent organization: Pompeu Fabra University; Barcelona; Spain | nif-0000-02834 | SCR_007654 | FCP | 2026-08-08 12:04:06 | 2 | |||||||||
|
Evola Resource Report Resource Website 1+ mentions |
Evola (RRID:SCR_007651) | database, data or information resource | Evola is a sub-database of H-InvDB, providing ortholog data as evolutionary annotation. Representative transcripts (one transcript per one gene locus) were analyzed as genes. Orthologs were first detected by computational analysis. Then, more reliable orthologs were determined by manual curation inspecting the phylogenetic trees., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | ortholog | has parent organization: National Institute of Advanced Industrial Science and Technology | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-02824 | SCR_007651 | Evola | 2026-08-08 12:04:11 | 2 | ||||||||
|
Fujifilm: Vevo 3100 Imaging System Resource Report Resource Website 1+ mentions |
Fujifilm: Vevo 3100 Imaging System (RRID:SCR_022152) | Vevo 3100 | instrument resource | Vevo 3100 micro ultrasound imaging system reduces speckle noise and artifacts while preserving and enhancing critical information for small animal in vivo studies. System helps you visualize your data at high resolution. | Ultrasound, FUJIFILM Visualsonics, Inc., ultrasound imaging system, instrument, equipment, USEDit | is listed by: USEDit | Restricted | SCR_022152 | Vevo 3100 micro ultrasound imaging system | 2026-08-08 12:02:24 | 9 | ||||||||
|
Creative Peptides Chemical Synthesis of PNA Oligomers with Fmoc Service Resource Resource Report Resource Website |
Creative Peptides Chemical Synthesis of PNA Oligomers with Fmoc Service Resource (RRID:SCR_022132) | service resource | Provides Fmoc based PNA synthesis. Route consists of repeated cycles of deprotection, activation, coupling and capping.Synthesis of small scale PNA oligomers, which can be performed on common DNA synthesis platforms. | Chemical Synthesis of PNA Oligomers with Fmoc, Synthesis by Fmoc Chemistry, Fmoc-based PNA synthesis, Creative Peptides, PNA Biotech, biomedical service | has parent organization: Creative Peptides | Restricted | SCR_022132 | Chemical Synthesis of PNA Oligomers with Fmoc, Creative Peptides Chemical Synthesis of PNA Oligomers with Fmoc | 2026-08-08 12:02:24 | 0 | |||||||||
|
Ruby on Rails Resource Report Resource Website 10+ mentions |
Ruby on Rails (RRID:SCR_022129) | RoR | web application, software library, software resource, software toolkit | Open source web application development framework. Model View Controller framework, providing default structures for database, web service, and web pages. | MVC, model–view–controller, web application development framework, Rails | DOI:10.1109/MS.2007.176 | Free, Available for download, Freely available | https://www.wikidata.org/wiki/Q190478 | https://github.com/rails/rails | SCR_022129 | 2026-08-08 12:02:19 | 10 | |||||||
|
BOC Sciences Protein Ubiquitination Service Resource Resource Report Resource Website |
BOC Sciences Protein Ubiquitination Service Resource (RRID:SCR_022127) | service resource | Service in field of drug discovery and research. BOC Sciences service in one stop Proteolysis Targeting Chimeric based molecular drug discovery which has become strategy in area of drug discovery. | BOC Sciences, biomedical service, PROTAC, Proteolysis Targeting Chimeric, molecular drug discovery, drug discovery | is related to: BOC Sciences | Restricted | SCR_022127 | BOC Sciences PROTAC Protein Ubiquitination Service, BOC Sciences Protein Ubiquitination Services, Protein Ubiquitination Services | 2026-08-08 12:02:24 | 0 | |||||||||
|
BOC Sciences Small molecule target protein ligand Service Resource Resource Report Resource Website |
BOC Sciences Small molecule target protein ligand Service Resource (RRID:SCR_022126) | service resource | Provides small molecule target protein ligand service to customers to meet new drug discovery goals. | BOC Sciences, biomedical service, small molecule target protein ligand, protein, ligand, PROTAC | Restricted | SCR_022126 | Small molecule target protein ligand, BOC Sciences PROTAC Small molecule target protein ligand, BOC Sciences Small molecule target protein ligand | 2026-08-08 12:02:23 | 0 | ||||||||||
|
BOC Sciences Peptide ligand for target protein Service Resource Resource Report Resource Website |
BOC Sciences Peptide ligand for target protein Service Resource (RRID:SCR_022125) | service resource | Service provider in drug discovery and development. Provides one stop PROTA development, which has become strategy in field of small molecular drug discovery. Provides peptide ligand design for target protein to customers to meet new drug discovery goals. | Peptide ligand for target protein, peptide ligands, target protein, PROTAC, BOC Sciences, biomedical service | is related to: BOC Sciences | Restricted | SCR_022125 | 2026-08-08 12:02:19 | 0 | ||||||||||
|
Thermo Fisher: EVOS XL Core Imaging System Resource Report Resource Website 1+ mentions |
Thermo Fisher: EVOS XL Core Imaging System (RRID:SCR_022190) | instrument resource | Designed to eliminate complexities of microscopy, EVOS XL Core system captures high-quality brightfield cell images right at your benchtop within minute. Instrument for monitoring cell cultures, either within hood or in cell culture room. | EVOS XL Core Microscope, instrument, equipment, USEDit | is listed by: USEDit | Restricted | SCR_022190 | 2026-08-08 12:02:24 | 3 | ||||||||||
|
Near Infrared Camera Resource Report Resource Website |
Near Infrared Camera (RRID:SCR_022113) | NIRCam | instrument resource | Instrument aboard the James Webb Space Telescope. It has two major tasks, as imager from 0.6 to 5 micron wavelength, and as wavefront sensor to keep 18-section mirrors functioning as one. Imager covers infrared wavelength range 0.6 to 5 microns. NIRCam detects light from the earliest stars and galaxies in process of formation, population of stars in nearby galaxies, as well as young stars in Milky Way and Kuiper Belt objects. NIRCam is equipped with coronagraphs, instruments that allow astronomers to take pictures of very faint objects around central bright object, like stellar systems. | instrument, equipment, USEDit, imager, Webb, NASA | is listed by: USEDit | SCR_022113 | Near Infrared Camera | 2026-08-08 12:02:19 | 0 | |||||||||
|
Creative Peptides Resource Report Resource Website |
Creative Peptides (RRID:SCR_022112) | commercial organization | Creative peptides is specialized in process development and manufacturing of bioactive peptides.Offers custom peptide synthesis, process development, manufacturing as well as catalog products for customers in industry and research area. Creative Peptides is staffed by scientific teams with experts in the fields of peptide technology, antibodies and synthetic chemistry. | bioactive peptides, custom peptide synthesis, process development, manufacturing, peptide technology, antibodies, synthetic chemistry |
is parent organization of: Creative Peptides Antibody Protein Bacteria Interactions Service Resource is parent organization of: Creative Peptides Backbone Cyclized Peptides Service Resource is parent organization of: Creative Peptides Cell Penetrating Peptide Design and Synthesis Service Resource is parent organization of: Creative Peptides Cosmetic Peptides Service Resource is parent organization of: Creative Peptides Design Platform Service Resource is parent organization of: Creative Peptides Peptide Drug Discovery Service Resource is parent organization of: Creative Peptides Target Validation in Peptide Drug Discovery Service Resource is parent organization of: Creative Peptides Target Analysis In Silico Service Resource is parent organization of: Creative Peptides Target Analysis in Bioscience Service Resource is parent organization of: Creative Peptides Hit Identification in Peptide Drug Discovery Service Resource is parent organization of: Creative Peptides PNA Synthesis Service Resource is parent organization of: Creative Peptides PNA Oligomer Synthesis Service Resource is parent organization of: Creative Peptides Chemical Synthesis of PNA Oligomers with Fmoc Service Resource is parent organization of: Creative Peptides Synthesis by Mmt Chemistry Service Resource is parent organization of: Creative Peptides PNA/DNA Chimera Synthesis Service Resource is parent organization of: Creative Peptides Total Peptide Library Construction Service Resource is parent organization of: Creative Peptides Peptide Drug Bioconjugations Service Resource is parent organization of: Creative Peptides: Peptide Lead Optimization Service Resource is parent organization of: Creative Peptides: Formulation Development Service Resource is parent organization of: Creative Peptides PNA Modification Service Resource is parent organization of: Creative Peptides PNA Modification of Connection between Nucleobase and Backbone Service Resource is parent organization of: Creative Peptides PNA Backbone Modification Service Resource is parent organization of: Creative Peptides PNA N/C Terminal Modification Service Resource is parent organization of: Creative Peptides PNA Modification by C Replacement Service Resource is parent organization of: Creative Peptides: Peptide Synthesis Service Resource is parent organization of: Creative Peptides Active Peptide Ingredients from Natural Products Service Resource is parent organization of: Creative Peptides Peptide Drug Biosynthesis Service Resource is parent organization of: Creative Peptides Peptide Drug Chemical Synthesis Service Resource is parent organization of: Creative Peptides Custom Peptide Synthesis Service Resource |
SCR_022112 | 2026-08-08 12:02:23 | 0 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the RRID Resources search. From here you can search through a compilation of resources used by RRID and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that RRID has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on RRID then you can log in from here to get additional features in RRID such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into RRID you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
