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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Cooperative Human Tissue Network Resource Report Resource Website 10+ mentions |
Cooperative Human Tissue Network (RRID:SCR_004446) | CHTN | tissue bank, biomaterial supply resource, material resource | The Cancer Diagnosis Program of the National Cancer Institute (NCI) initiated the Cooperative Human Tissue Network (CHTN) in 1987 to provide increased access to human tissue for basic and applied scientists from academia and industry to accelerate the advancement of discoveries in cancer diagnosis and treatment. This unique resource provides remnant human tissues and fluids from routine procedures to investigators who utilize human biospecimens in their research. Unlike tissue banks, the CHTN works prospectively with each investigator to tailor specimen acquisition and processing to meet their specific project requirements. Because the CHTN is funded by the NCI, the CHTN is able to maintain nominal processing fees for its services. The CHTN is comprised of five adult divisions and one pediatric division. Each of the adult divisions coordinates investigator applications/requests based upon the investigator's geographic location within North America. The Pediatric Division manages all investigators who request pediatric specimens only. The CHTN divisions share coordination for requests from outside North America. The CHTN divisions work both independently with individual investigators and together as a seamless unit to fulfill requests that are difficult to serve by any single division. The CHTN's unique informatics system allows each division to effectively communicate and network the needs of its investigators to all CHTN divisions. The Network as a whole can then help fulfill an investigator's request. Biospecimens from surgeries, autopsies and other routine procedures: Malignant, Benign, Diseased, Normal, Biofluids (urine, serum, plasma, buffy coat) High quality specimens at LOW processing fees: Fresh, Frozen, Floating in fixative, RNAlater, Paraffin embedded or and/or unstained slides, THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | biomaterial supply resource, human tissue, network, cancer, NCI |
is listed by: One Mind Biospecimen Bank Listing is related to: UAB SPORE Biorepository Banks is related to: University of Alabama; Alabama; USA is related to: University of Pennsylvania; Philadelphia; USA is related to: University of Virginia; Virginia; USA is related to: Ohio State University College of Medicine; Ohio; USA is related to: Vanderbilt University; Tennessee; USA |
NCI | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_44126 | http://www.chtn.nci.nih.gov/ | SCR_004446 | Cooperative Human Tissue Network | 2026-08-03 09:32:26 | 25 | |||||
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Ohio State Biorepository Resource Report Resource Website |
Ohio State Biorepository (RRID:SCR_004714) | HTRN Biospecimen Bank | tissue bank, biomaterial supply resource, material resource | The HTRN biospecimen bank is comprised of samples for the Ohio State University Cancer and Leukemia Group B Pathology Coordinating Office (CALGB-PCO) and the Ohio State University Midwestern Division of the Cooperative Human Tissue Network (CHTN). The CALGB-PCO banks biospecimens donated by patients enrolled in clinical trials. Samples can include tumor and normal tissue, plasma, serum, whole blood and white blood cells and urine. All of these samples are used later in correlative studies. The Midwestern Division of the CHTN stores a temporary biospecimen bank of tumor and normal tissue, tissue slides and paraffin embedded tissue blocks for research investigators throughout the country and Canada who are trying to find a cure for cancer. As part of the HTRN biospecimen bank, a Rees Scientific equipment monitoring system helps to secure the integrity and quality of samples stored in the biorepository. Scientific research within the HTRN is currently underway to determine the best methods in tissue storage for long term use. The NCI First-Generation Guidelines for NCI-Supported Biorepositories and the NCI Best Practices for Biospecimen Resources are continuously reviewed and adapted by the HTRN. | tumor tissue, normal tissue, plasma, serum, whole blood, white blood cell, urine, blood, tissue, tissue slide, paraffin embedded tissue block, slide, paraffin, cancer, leukemia, research |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Ohio State University College of Medicine; Ohio; USA has parent organization: Human Tissue Resource Network |
Cancer, Leukemia, Tumor | NCI | Private and Public (USA and Canada): Serves the Ohio State University Cancer and Leukemia Group B Pathology Coordinating Office (CALGB-PCO) and the Ohio State University Midwestern Division of the Cooperative Human Tissue Network (CHTN). The Midwestern Division of the CHTN stores a temporary biospecimen bank of tumor and normal tissue, Tissue slides and paraffin embedded tissue blocks for research investigators throughout the country and Canada who are trying to find a cure for cancer. | nlx_71208 | http://www.pathology.med.ohio-state.edu/htrn/Biorepository/default.asp | SCR_004714 | Human Tissue Resource Network Biospecimen Bank, HTRN Biorepository Biospecimen Resource, HTRN Biorepository & Biospecimen Resource, HTRN Biorepository and Biospecimen Resource, HTRN Biorepository | 2026-08-03 09:32:43 | 0 | ||||
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PILGRM Resource Report Resource Website 1+ mentions |
PILGRM (RRID:SCR_004749) | PILGRIM | data analysis service, service resource, analysis service resource, production service resource | PILGRM (the platform for interactive learning by genomics results mining) puts advanced supervised analysis techniques applied to enormous gene expression compendia into the hands of bench biologists. This flexible system empowers its users to answer diverse biological questions that are often outside of the scope of common databases in a data-driven manner. This capability allows domain experts to quickly and easily generate hypotheses about biological processes, tissues or diseases of interest. Specifically PILGRM helps biologists generate these hypotheses by analyzing the expression levels of known relevant genes in large compendia of microarray data. PILGRM is for the biologist with a set of proteins relevant to a disease, biological function or tissue of interest who wants to find additional players in that process. It uses a data driven method that provides added value for literature search results by mining compendia of publicly available gene expression datasets using lists of relevant and irrelevant genes (standards). PILGRM produces publication quality PDFs usable as supplementary material to describe the computational approach, standards and datasets. Each PILGRM analysis starts with an important biological question (e.g. What genes are relevant for breast cancer but not mammary tissue in general?). For PILGRM to discover relevant genes, it needs examples of both genes that you would (positive) and would not (negative) find interesting. Lists of these genes are what we call standards and in PILGRM you can build your own standards or you can use standards from common sources that we pre-load for your convenience. PILGRM lets you build your own literature-documented standards so that processes, disease, and tissues that are not well covered in databases of tissue expression, disease, or function can still be used for an analysis. | data mining, gene expression, user directed data mining, bio.tools |
is listed by: Debian is listed by: bio.tools has parent organization: Princeton University; New Jersey; USA |
NSF DBI-0546275; NIGMS R01 GM071966; NIGMS P50 GM071508; NCI T32 CA005928 |
PMID:21653547 | nlx_75372, biotools:pilgrm | https://bio.tools/pilgrm | SCR_004749 | Platform for Interactive Learning by Genomics Results Mining | 2026-08-03 09:32:43 | 1 | |||||
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Case Comprehensive Cancer Center Biorepository and Tissue Processing Core Facility Resource Report Resource Website |
Case Comprehensive Cancer Center Biorepository and Tissue Processing Core Facility (RRID:SCR_004382) | BTPC | tissue bank, biomaterial supply resource, material resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 11, 2023. The Case Comprehensive Cancer Center''s Biorepository and Tissue Processing Core Facility (BTPC) serves two primary functions: 1. To build an inventory of remnant human tissues, blood and other body fluids (collectively termed biospecimens) targeted towards cancer and other medical research, for later assignment to investigators; and 2. To provide long term, controlled storage of biospecimens for specific researchers. These samples are for research purposes only and may not be used for clinical diagnosis or implantation into humans. Clinical information relating to the samples and donors are collected and maintained in a secure database. Samples and data are de-identified or de-linked before release to the researcher unless he/she has specific IRB approval to gain access to this information. Remnant biospecimens are prospectively collected from surgical procedures, autopsies and clinical laboratories for the BTPC by the Human Tissue Procurement Facility (HTPF), which operates under UH-IRB Protocol 01-02-45. Blood and bone marrow specimens are collected for the BTPC by the Hematopoietic Stem Cell Core Facility (HSCC), which operates under UH-IRB Protocol 09-90-195. The Division of Surgical Pathology at University Hospitals Case Medical Center (UHCMC) has clinical archives of paraffin blocks that can be made available through the BTPC for retrospective research studies under the approval of the Vice Chair for Clinical Affairs at UHCMC. Surgical Pathologists associated with the BTPC are responsible for determining which blocks can be made available and how much material can be removed from the blocks. Types of Tissue Available * Malignant, benign, diseased, normal and normal human tissues * Normal adjacent tissues available paired with tumor specimens in many cases * Tissues are collected from over 50 anatomic sites * Frozen specimens, OCT-embedded and paraffin-embedded tissues * Large array of paraffin-embedded specimens from clinical archives of paraffin blocks and QC research blocks maintained by the HTPF * Peripheral blood and bone marrow samples from initial visits and follow-up procedures are processed to obtain serum and cell fractions for storage * No samples are collected from individuals with known infectious illnesses * Fetal biospecimens are not collected due to state and local statutes | tissue, blood, body fluid, bone marrow, stem cell, serum, cell fraction, paraffin block, clinical data, malignant tissue, benign tissue, diseased tissue, normal tissue, cancer, control, research, frozen, oct-embedded, paraffin-embedded, tumor, paraffin, oct |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Case Western Reserve University Case Comprehensive Cancer Center |
Cancer, Control, Tumor | NCI P30 CA43703 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_39515 | http://cancer.case.edu/sharedresources/biorepository/ | SCR_004382 | Case Western Biorepository, Case Western Reserve University: Biorepository and Tissue Processing Core Facility, CWRU BTPC, Biorepository and Tissue Processing Core Facility of the Case Comprehensive Cancer Center, Case BTPC, Case Comprehensive Cancer Center Biorepository Tissue Processing Core Facility, Case CCC BTPC, Case Comprehensive Cancer Center Biorepository and Tissue Processing Core Facility, Biorepository Tissue Processing Core Facility, Case Western Biorepository and Tissue Processing Core Facility, CWRU CCC Biorepository Tissue Processing Core Facility, Case CCC Biorepository Tissue Processing Core Facility | 2026-08-03 09:32:25 | 0 | ||||
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AIDS Malignancy Bank Resource Report Resource Website |
AIDS Malignancy Bank (RRID:SCR_004417) | AMB | tissue bank, biomaterial supply resource, material resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented on February 27, 2012. The National Cancer Institute established centers in the United States and its territories for the collection and distribution of tissues, blood and secretions from patients with clinically-characterized AIDS related malignancies in 1994. The AIDS Malignancy Bank makes these tissues available to qualified investigators in the United States for research on AIDS malignancies. It is hoped that by providing access to these high-quality specimens, research in AIDS-related malignancies will be encouraged and expanded. The AMB contains formalin-fixed paraffin-embedded tissues, fresh-frozen tissues, malignant-cell suspensions, fine-needle aspirates, and cell lines from AIDS-related malignancies. The bank also contains serum, plasma, urine, bone marrow, cervical secretions, anal swabs, saliva semen and multi-site autopsy tissues from patients with AIDS-related malignancies who have participated in clinical trials. The bank has an associated database that contains prognostic, staging, outcome and treatment data on patients from whom tissues were obtained. Researchers pay for preparation and shipping of specimens. | tissue, blood, bodily fluid, malignant-cell, fine-needle aspirate, cell line, serum, plasma, urine, bone marrow, cervical secretion, anal swab, saliva, semen, autopsy, clinical data, formalin-fixed paraffin-embedded, fresh-frozen, frozen, suspension, aids, aids related malignancy |
is listed by: One Mind Biospecimen Bank Listing has parent organization: David Geffen School of Medicine at UCLA; California; USA |
AIDS, AIDS related malignancy | NCI | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_143727 | SCR_004417 | 2026-08-03 09:32:26 | 0 | ||||||
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SCAN Resource Report Resource Website 500+ mentions |
SCAN (RRID:SCR_005185) | SCAN | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on March 17, 2022. A large-scale database of genetics and genomics data associated to a web-interface and a set of methods and algorithms that can be used for mining the data in it. The database contains two categories of single nucleotide polymorphism (SNP) annotations: # Physical-based annotation where SNPs are categorized according to their position relative to genes (intronic, inter-genic, etc.) and according to linkage disequilibrium (LD) patterns (an inter-genic SNP can be annotated to a gene if it is in LD with variation in the gene). # Functional annotation where SNPs are classified according to their effects on expression levels, i.e. whether they are expression quantitative trait loci (eQTLs) for that gene. SCAN can be utilized in several ways including: (i) queries of the SNP and gene databases; (ii) analysis using the attached tools and algorithms; (iii) downloading files with SNP annotation for various GWA platforms. . eQTL files and reported GWAS from NHGRI may be downloaded., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | single nucleotide polymorphism, copy number variation, annotation, genetics, genomics, genome-wide association study, gene, linkage disequilibrium, function, expression quantitative trait loci, expression, quantitative trait loci, chromosome, chromosome region, affymetrix, cerebellum, parietal, liver |
is listed by: OMICtools is listed by: SoftCite has parent organization: University of Chicago; Illinois; USA |
NIMH R01MH090937; NHLBI U01HL084715; NIGMS U01GM61393; NIDDK P60 DK20595; NCI P50 CA125183 |
PMID:25818895 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_00181 | SCR_005185 | SCAN: SNP and CNV Annotation Database, SCAN - SNP and CNV Annotation Database | 2026-08-03 09:32:50 | 740 | |||||
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PHAROS Resource Report Resource Website |
PHAROS (RRID:SCR_016258) | TCRD | data or information resource, database | Database of ligands and diseases. Its goal is to develop a knowledge-base for the Druggable Genome (DG) in order to illuminate the uncharacterized and/or poorly annotated portion of the genome. DG, focusing on four of the most commonly drug-targeted protein families: G-protein-coupled receptors (GPCRs); nuclear receptors (NRs); ion channels (ICs); and kinases. | protein, target, disease, ligand, phenotype, drug, medication, pharmacology, gpcr, nuclear, receptor, ion, channel, kinase | Novo Nordisk Foundation NNF14CC0001; NCATS ; NCI U24 CA224370; NCI CA189205; NCI CA189201 |
PMID:27903890 | Freely available, Free, Available for download | SCR_016258 | Target Central Resource Database | 2026-08-03 09:36:40 | 0 | |||||||
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HumanBase Resource Report Resource Website 50+ mentions |
HumanBase (RRID:SCR_016145) | data or information resource, database | Formerly known as GIANT (Genome-scale Integrated Analysis of gene Networks in Tissues), HumanBase applies machine learning algorithms to learn biological associations from massive genomic data collections. These integrative analyses reach beyond existing "biological knowledge" represented in the literature to identify novel, data-driven associations. | genome, analysis, tissue, network, gene, machine, learning, biology | NIGMS R01 GM071966; NHGRI R01 HG005998; NHLBI U54 HL117798; NIGMS P20 GM103534; NHGRI T32 HG003284; NCI T32 CA009528; NIGMS P50 GM071508; US Department Of Health And Human Services HHSN272201000054C |
PMID:25915600 | Free, Public | SCR_016145 | GIANT (Genome-scale Integrated Analysis of gene Networks in Tissues), GIANT | 2026-08-03 09:36:17 | 74 | ||||||||
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Waxholm Space Atlas of the Sprague Dawley Rat Brain Resource Report Resource Website 10+ mentions |
Waxholm Space Atlas of the Sprague Dawley Rat Brain (RRID:SCR_017124) | WHS-SD-atlas | waxholm atlas, data or information resource, atlas | Open access volumetric atlas of anatomical delineations of rat brain based on structural contrast in isotropic magnetic resonance and diffusion tensor images acquired ex vivo from 80 day old male Sprague Dawley rat at Duke Center for In Vivo Microscopy. Spatial reference is provided by Waxholm Space coordinate system. Location of bregma and lambda are identified as anchors towards stereotaxic space. Application areas include localization of signal in non structural images. Atlas, MRI and DTI volumes, and diffusion tensor data are shared in NIfTI format. | volumetric, atlas, anatomical, delineation, rat, brain, structural, contrast, isotropic, MIR, DTI, male, Sprague Dawley, image |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: ITK-SNAP is related to: PMOD Software is related to: Duke University; North Carolina; USA has parent organization: University of Oslo; Oslo; Norway works with: MeshView works with: VisuAlign |
Research Council of Norway ; EC Human Brain Project ; NIBIB P41 EB015897; NCI U24 CA092656 |
PMID:24726336 PMID:25585022 |
Free, Available for download, Freely available | SCR_017124 | WHS SD rat atlas, WHS_SD_rat_atlas, WHS-SD-rat-atlas | 2026-08-03 09:37:00 | 35 | ||||||
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Signaling Pathways Project Resource Report Resource Website 10+ mentions |
Signaling Pathways Project (RRID:SCR_018412) | SPP | data or information resource, database | Web multi omics knowledgebase based upon public, manually curated transcriptomic and cistromic datasets involving genetic and small molecule manipulations of cellular receptors, enzymes and transcription factors. Integrated omics knowledgebase for mammalian cellular signaling pathways. Web browser interface was designed to accommodate numerous routine data mining strategies. Datasets are biocurated versions of publically archived datasets and are formatted according to recommendations of the FORCE11 Joint Declaration on Data Citation Principles73, and are made available under Creative Commons CC 3.0 BY license. Original datasets are available. | Data integration, genetic database, gene regulatory network, cell signalling, cellular signalling network, transcriptomic data, manualy curated, cistromic data, cellular receptor, enzyme, transcrptomic factor, mammalian cellular signaling pathway, data mining strategy, dataset, , bio.tools |
is used by: Hypothesis Center is listed by: Debian is listed by: bio.tools works with: Gene Expression Omnibus (GEO) works with: NCBI Sequence Read Archive (SRA) |
NIDDK DK097771; NIDDK DK097748; NIDDK DK48807; NIDDK DK107535; NIDDK DK56338; NIDDK DK095686; NIDDK DK105126; NCI CA125123; NHLBI HL127624; Dan L. Duncan NCI Comprehensive Cancer Center at Baylor College of Medicine ; CPRIT RP150578 |
PMID:31672983 | Free, Freely available | r3d100013650, biotools:Signaling_Pathways_Project | https://bio.tools/Signaling_Pathways_Project, https://doi.org/10.17616/R31NJN0Y | https://www.signalingpathways.org | SCR_018412 | 2026-08-03 09:36:57 | 30 | ||||
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Molecular Signatures Database Resource Report Resource Website 500+ mentions |
Molecular Signatures Database (RRID:SCR_016863) | MSigDB | data or information resource, database | Collection of annotated gene sets for use with Gene Set Enrichment Analysis (GSEA) software. | collection, annotated, gene, set, GSEA, enrichment, analysis, genome, RNA, expression, data, FASEB list, DRKB |
uses: GSEA uses: Gene Set Enrichment Analysis has parent organization: Broad Institute |
NIH ; NIGMS ; NCI CA295532 |
Free, Freely available, Registration required to download GSEA software | https://www.gsea-msigdb.org/gsea/msigdb/ | SCR_016863 | Molecular Signatures Database, The Molecular Signatures Database, MSigDB, MSigDB database v6.2 | 2026-08-03 09:36:57 | 762 | ||||||
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GESS Resource Report Resource Website 1+ mentions |
GESS (RRID:SCR_021847) | data or information resource, database | Database of global evaluation of SARS-CoV-2/hCoV-19 sequences.Provides comprehensive analysis results based on tens of thousands of high-coverage and high-quality SARS-CoV-2 complete genomes. | global evaluation of SARS-CoV-2/hCoV-19 sequences, SARS-CoV-2 complete genomes | NCI P30 CA082709; Walther Cancer Foundation |
PMID:33045727 | Free, Freely available | SCR_021847 | Global Evaluation of SARS-CoV-2/hCoV-19 Sequences | 2026-08-03 09:37:40 | 1 | ||||||||
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Midas Platform Resource Report Resource Website 10+ mentions |
Midas Platform (RRID:SCR_002186) | Midas | data management software, software toolkit, software resource, software application | Open-source toolkit that enables the rapid creation of tailored, web-enabled data storage and provides a cohesive system for data management, visualization, and processing. At its core, Midas Platform is implemented as a PHP modular framework with a backend database (PostGreSQL, MySQL and non-relational databases). While the Midas Platform system can be installed and deployed without any customization, the framework has been designed with customization in mind. As building one system to fit all is not optimal, the framework has been extended to support plugins and layouts. Through integration with a range of other open-source toolkits, applications, or internal proprietary workflows, Midas Platform offers a solid foundation to meet the needs of data-centric computing. Midas Platform provides a variety of data access methods, including web, file system and DICOM server interfaces, and facilitates extending the methods in which data is stored to other relational and non-relational databases. | data storage, data analysis, visualization, multimedia, digital archiving, processing | has parent organization: Kitware | NLM ; NIH ; NCI |
PMID:18560078 | Apache License, v2, Simplified BSD License, BSD License | nlx_154696 | SCR_002186 | Midas Platform - The Multimedia Digital Archiving System | 2026-08-03 09:31:47 | 42 | |||||
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TooManyCells Resource Report Resource Website 1+ mentions |
TooManyCells (RRID:SCR_025328) | software toolkit, software resource, source code | Software suite of tools, algorithms, and visualizations focusing on relationships between cell clades. This includes new ways of clustering, plotting, choosing differential expression comparisons. Identifies and visualizes relationships of single-cell clades. | Spectral clustering, radial tree, visualization, cell clades, |
is related to: too-many-cells-python is related to: TooManyCellsInteractive |
NCI T32 CA009140; NCI R01 CA215518; NHLBI R01 HL145754; Sloan Foundation ; NCI R01 CA230800 |
PMID:32123397 | Free, Available for download, Freely available | https://gregoryschwartz.github.io/too-many-cells/ | SCR_025328 | 2026-08-03 09:39:08 | 4 | |||||||
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glmpca Resource Report Resource Website 1+ mentions |
glmpca (RRID:SCR_025517) | software toolkit, software resource, source code | Software R package for dimension reduction of non-normally distributed data. Generalized PCA for non-normally distributed data. | dimension reduction, non-normally distributed data, principal components analysis, | NCI T32CA009337; NHGRI R00HG009007; Chan-Zuckerberg Initiative ; NHGRI R01HG005220; NIGMS R01GM083084; NHGRI P41HG004059 |
PMID:31870412 | Free, Available for download, Freely available, | https://CRAN.R-project.org/package=glmpca | SCR_025517 | generalized version of principal components analysis | 2026-08-03 09:39:10 | 1 | |||||||
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CellMinerCDB Resource Report Resource Website 10+ mentions |
CellMinerCDB (RRID:SCR_025649) | software resource, web application | Web application integrating cancer cell line pharmacogenomics. Enables exploration and analysis of cancer cell line pharmacogenomic data across different sources. Focuses on cancer patient-derived human cell line molecular and pharmacological data. CellMinerCDB (v1.2) includes several improvements. | integrating cancer cell line pharmacogenomics, exploration and analysis of cancer cell line pharmacogenomic data, exploration and analysis, cancer cell line, pharmacogenomic data | is used by: National Cancer Institute Genomics and Pharmacology Core Facility | NIGMS P41 GM103504; NCI |
PMID:30553813 PMID:30553813 |
Free, Freely available, | SCR_025649 | , Cell Miner CDB, CellMiner Cross-Database, CellMinerCDB 1.2 | 2026-08-03 09:39:11 | 11 | |||||||
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NovoBreak Resource Report Resource Website 1+ mentions |
NovoBreak (RRID:SCR_026032) | software resource, software application, source code | Software tool to discover somatic and germline structural variation breakpoints in whole genome sequencing data. Can report accurate breakpoints of Deletions, Duplications, Inversions and Translocations. Designed for Illumina paired-end data. Local assembly for breakpoint detection in cancer genomes. | discover somatic and germline structural variation, structural variation breakpoints, whole-genome sequencing data, local assembly, breakpoint detection, cancer genomes, | NCI R01 CA172652; NHGRI U41 HG007497; NCI P30 CA016672 |
PMID:27892959 | Free, Available for download, Freely available, | SCR_026032 | 2026-08-03 09:38:52 | 1 | |||||||||
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UpSetR Resource Report Resource Website 50+ mentions |
UpSetR (RRID:SCR_026112) | software toolkit, software resource, source code | Software R package for visualization of intersecting sets and their properties. | visualization of intersecting sets, | NHGRI R00 HG007583; NHGRI U54HG007963; NCI U01 CA198935 |
PMID:28645171 | Free, Available for download, Freely available | https://cran.rstudio.com/web/packages/UpSetR/ | SCR_026112 | 2026-08-03 09:38:53 | 72 | ||||||||
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AutoGVP Resource Report Resource Website 1+ mentions |
AutoGVP (RRID:SCR_026107) | software resource, software application, source code | Software tool integrates ClinVar variant annotation with modified InterVar classification approach, based on American College of Medical Genetics-Association for Molecular Pathology guidelines, to output germline variant classification. Since AutoGVP input only requires VCF file, it can facilitate large-scale, clinically focused classification of germline sequence variants. | germline variant classification, germline sequence variants, germline, sequence variants, | is related to: ClinVar | NCI R03CA230366; NCI R01CA237562; NCI R03CA287169 |
PMID:38426335 | Free, Available for download, Freely available | SCR_026107 | Automated Germline Variant Pathogenicity | 2026-08-03 09:39:13 | 3 | |||||||
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OncoTree Resource Report Resource Website 10+ mentions |
OncoTree (RRID:SCR_026218) | topical portal, data or information resource, portal, disease-related portal | Community-driven cancer classification platform encompassing rare and common cancers that provides clinically relevant and appropriately granular cancer classification for clinical decision support systems and oncology research. Cancer classification system for precision oncology. | cancer classification platform, rare and common cancers, cancer classification, precision oncology, | cancer | NCI P30 CA008748 | PMID:33625877 | Free, Freely available | SCR_026218 | 2026-08-03 09:39:14 | 14 |
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