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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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International Classification for Nursing Practice Resource Report Resource Website |
International Classification for Nursing Practice (RRID:SCR_003099) | ICNP | ontology, data or information resource, controlled vocabulary | Ontology of the international classification for nursing practice. | owl | is listed by: BioPortal | Free, Available for download, Freely available | nlx_157445 | SCR_003099 | 2026-08-04 09:40:49 | 0 | ||||||||
|
Spider Ontology Resource Report Resource Website |
Spider Ontology (RRID:SCR_003117) | SPD | ontology, data or information resource, controlled vocabulary | An ontology for spider comparative biology including anatomical parts (e.g. leg, claw), behavior (e.g. courtship, combing) and products (i.g. silk, web, borrow). | obo, anatomy, organismal, behavior, product, spider |
is listed by: BioPortal is listed by: OBO has parent organization: Tree of Life: Phylogeny of Spiders |
Free, Freely available | nlx_157595 | http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/anatomy/gross_anatomy/animal_gross_anatomy/spider/spider_comparative_biology.obo | SCR_003117 | 2026-08-04 09:40:49 | 0 | |||||||
|
Interaction Ontology Resource Report Resource Website |
Interaction Ontology (RRID:SCR_003055) | IXNO | ontology, data or information resource, controlled vocabulary | Ontology to enable curation of chemical-gene and chemical-protein interactions for the Comparative Toxicogenomics Database (CTD), a freely available resource that aims to promote understanding and novel hypothesis development about the effects of the environment on human health. | obo |
is listed by: BioPortal has parent organization: Comparative Toxicogenomics Database (CTD) |
Free, Freely available | nlx_157444 | SCR_003055 | 2026-08-04 09:40:48 | 0 | ||||||||
|
Mental Functioning Ontology Resource Report Resource Website 1+ mentions |
Mental Functioning Ontology (RRID:SCR_003245) | MF, MFO | ontology, data or information resource, controlled vocabulary | An ontology for mental functioning, including mental processes such as cognition and traits such as intelligence, and related diseases and disorders. It is developed in the context of the Ontology for General Medical Science and the Basic Formal Ontology. The project is being developed in collaboration between the University of Geneva, Switzerland, and the University at Buffalo, USA. The project is being developed with full involvement of all relevant communities, following best practices laid out by the OBO Foundry. Efforts are currently underway to align with related projects including the Behaviour Ontology, the Cognitive Atlas, the Cognitive Paradigm Ontology and the Neural Electro Magnetic Ontologies. | mental functioning, mental process, cognition, trait, psychology, neuroscience, owl |
is listed by: BioPortal is listed by: Google Code is listed by: OBO is related to: Information Artifact Ontology is related to: Emotion Ontology is related to: Emotion Ontology has parent organization: University at Buffalo; New York; USA |
Free, Freely available | nlx_157305 | http://purl.obolibrary.org/obo/mf.owl | SCR_003245 | mental-functioning-ontology | 2026-08-04 09:40:51 | 1 | ||||||
|
Emotion Ontology Resource Report Resource Website |
Emotion Ontology (RRID:SCR_003272) | MFOEM | ontology, data or information resource, controlled vocabulary | An ontology of affective phenomena such as emotions, moods, appraisals and subjective feelings, designed to support interdisciplinary research by providing unified annotations. The ontology is a domain specialization of the broader Mental Functioning Ontology. | owl, affect, emotion, mood, appraisal, feeling, health, ontology |
is listed by: Google Code is listed by: OBO is listed by: BioPortal is related to: Mental Functioning Ontology is related to: Mental Functioning Ontology |
Free, Available for download, Freely available | nlx_157396 | https://github.com/jannahastings/emotion-ontology | SCR_003272 | 2026-08-04 09:40:52 | 0 | |||||||
|
Experimental Conditions Ontology Resource Report Resource Website 1+ mentions |
Experimental Conditions Ontology (RRID:SCR_003306) | XCO | ontology, data or information resource, controlled vocabulary | An ontology designed to represent the conditions under which physiological and morphological measurements are made both in the clinic and in studies involving humans or model organisms. | obo, clinical, physiology, morphology, measurement |
is listed by: BioPortal is listed by: OBO has parent organization: Medical College of Wisconsin; Wisconsin; USA |
PMID:22654893 | Free, Available for download, Freely available | nlx_157401 | ftp://rgd.mcw.edu/pub/ontology/experimental_condition/experimental_condition.obo, http://sourceforge.net/projects/phenoonto/ | SCR_003306 | Experimental condition ontology | 2026-08-04 09:40:52 | 1 | |||||
|
National Center for Biomedical Ontology Resource Report Resource Website 10+ mentions |
National Center for Biomedical Ontology (RRID:SCR_003304) | NCBO | portal, training resource, organization portal, database, data or information resource | Organization that provides biomedical researchers with online tools and a web portal enabling them to access, review, and integrate disparate ontological resources in all aspects of biomedical investigation and clinical practice. A major focus of the work involves the use of biomedical ontologies to aid in the management and analysis of data derived from complex experiments. | biomedical ontology, biomedical software tools |
is used by: DisGeNET is related to: Protege is related to: National Centers for Biomedical Computing has parent organization: National Centers for Biomedical Computing is parent organization of: BioPortal is parent organization of: PROTOTYPE - Suspected Overlap Among OBO Foundry Candidate Ontologies is parent organization of: Bio-Mixer |
NHGRI U54 HG004028 | PMID:21672956 PMID:23734708 |
Free, Freely available | nif-0000-31891 | SCR_003304 | 2026-08-04 09:40:52 | 27 | ||||||
|
Vertebrate Trait Ontology Resource Report Resource Website |
Vertebrate Trait Ontology (RRID:SCR_003214) | VT | ontology, data or information resource, controlled vocabulary | A controlled vocabulary for the description of traits (measurable or observable characteristics) pertaining to the morphology, physiology, or development of vertebrate organisms. | trait, morphology, physiology, development, obo |
is listed by: BioPortal is related to: monarch-ontologies is related to: Rat Genome Database (RGD) is related to: Animal QTLdb is related to: Mouse Phenome Database (MPD) has parent organization: SourceForge |
PMID:23937709 | Free, Available for download, Freely available | nlx_156940 | SCR_003214 | VT Ontology | 2026-08-04 09:40:51 | 0 | ||||||
|
Chemical Information Ontology Resource Report Resource Website 1+ mentions |
Chemical Information Ontology (RRID:SCR_003290) | CHEMINF | ontology, data or information resource, controlled vocabulary | An ontology that aims to establish a standard in representing chemical information including chemical structure and the ability to richly describe chemical properties, whether intrinsic or computed. It includes terms for the descriptors commonly used in cheminformatics software applications and the algorithms which generate them. | owl, biochemistry, chemistry, chemical structure, chemical property, structure, property, molecular |
is listed by: BioPortal is listed by: OBO is listed by: Google Code has parent organization: European Bioinformatics Institute |
PMID:21991315 | Free, Available for download, Freely available | nlx_157362 | http://purl.bioontology.org/ontology/CHEMINF, http://semanticchemistry.googlecode.com/svn/trunk/ontology/cheminf.owl | SCR_003290 | 2026-08-04 09:40:52 | 2 | ||||||
|
Fly Taxonomy Resource Report Resource Website |
Fly Taxonomy (RRID:SCR_003317) | FB-SP, FBsp | data or information resource, controlled vocabulary | The taxonomy of the family Drosophilidae (largely after Baechli) and of other taxa referred to in FlyBase. | obo, taxonomy, organismal |
is listed by: BioPortal is listed by: OBO is listed by: SourceForge has parent organization: FlyBase |
Free, Available for download, Freely available | nlx_157407 | http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/taxonomy/fly_taxonomy.obo | SCR_003317 | FlyBase Taxa | 2026-08-04 09:40:52 | 0 | ||||||
|
Plant Trait Ontology Resource Report Resource Website |
Plant Trait Ontology (RRID:SCR_003461) | PTO, TO | ontology, data or information resource, controlled vocabulary | A controlled vocabulary to describe phenotypic traits in plants. Each trait is a distinguishable feature, characteristic, quality or phenotypic feature of a developing or mature plant, or a plant part. | obo, phenotype, trait |
is listed by: BioPortal is listed by: OBO has parent organization: Gramene |
nlx_157556 | http://purl.bioontology.org/ontology/PTO, http://palea.cgrb.oregonstate.edu/viewsvn/Poc/trunk/ontology/collaborators_ontology/gramene/traits/trait.obo?view=co, http://www.gramene.org/plant_ontology/index.html#to, http://www.gramene.org/plant_ontology/ | SCR_003461 | 2026-08-04 09:40:55 | 0 | ||||||||
|
Suggested Ontology for Pharmacogenomics Resource Report Resource Website |
Suggested Ontology for Pharmacogenomics (RRID:SCR_003497) | SOPHARM, SO-Pharm | ontology, data or information resource, controlled vocabulary | A domain ontology implemented in OWL-DL, which proposes a formal description of pharmacogenomic knowledge. It articulates different ontologies that represent complementary sub-domains of pharmacogenomics, i.e. related to genotype, phenotype, drugs, and clinical trials. SO-Pharm enables the representation of pharmacogenomic relationships between a drug, a genomic variation and a phenotype trait. In addition, it enables the representation of a patient and more largely a panel included in trials, and populations. SO-Pharm enables the representation of measured items on patients such as results from the observation of a phenotype trait or of genomic variations. SO-Pharm supports knowledge about pharmacogenomic hypothesis, case study, and investigations in pharmacogenomics. SO-Pharm is designed to facilitate data integration and knowledge discovery in pharmacogenomics. In addition it provides a consistent articulation of ontologies of pharmacogenomic sub-domains. | owl, pharmacogenomics, health, pathological, molecular, cellular, organismal, multi-organismal, drug, genomic variation, phenotype, trait, hypothesis, case study, investigation |
is listed by: BioPortal is listed by: OBO has parent organization: University of Lorraine; Lorraine; France |
nlx_157597 | http://purl.bioontology.org/ontology/SOPHARM, SO-Pharm, http://purl.oclc.org/NET/loria/sopharm/owl/sopharm | SCR_003497 | 2026-08-04 09:40:55 | 0 | ||||||||
|
Physico-Chemical Process Resource Report Resource Website |
Physico-Chemical Process (RRID:SCR_003530) | REX | ontology, data or information resource, controlled vocabulary | An ontology of physico-chemical processes, i.e. physico-chemical changes occurring in course of time. It includes both microscopic processes (involving molecular entities or subatomic particles) and macroscopic processes. Some biochemical processes from Gene Ontology (GO Biological process) can be described as instances of REX. | obo, physico-chemical process, physico-chemical, microscopic process, molecular entity, subatomic particle, macroscopic process, biochemical process |
is listed by: BioPortal is listed by: OBO is related to: Gene Ontology has parent organization: CHEBI |
nlx_157639 | http://purl.bioontology.org/ontology/MO, ftp://ftp.ebi.ac.uk/pub/databases/chebi/ontology/rex.obo, http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=REX | http://www.ebi.ac.uk/~kirill/REX/ | SCR_003530 | Physico-Chemical Process (REX) | 2026-08-04 09:40:56 | 0 | ||||||
|
Software Ontology Resource Report Resource Website 1+ mentions |
Software Ontology (RRID:SCR_003493) | SWO | ontology, data or information resource, controlled vocabulary | An ontology for describing software tools, their types, tasks, versions, provenance and data associated (the input and output data types and the uses the software can be put to). | owl, software, provenance, version, ontology |
is listed by: BioPortal is listed by: OBO is listed by: SourceForge is related to: Information Artifact Ontology has parent organization: European Bioinformatics Institute has parent organization: University of Manchester; Manchester; United Kingdom |
JISC | The community can contribute to this resource | nlx_157591 | http://www.ebi.ac.uk/efo/swo, http://purl.bioontology.org/ontology/SWO, http://theswo.svn.sourceforge.net/viewvc/theswo/trunk/src/release/swoinowl/swo_merged/swo_merged.owl | SCR_003493 | 2026-08-04 09:40:55 | 2 | ||||||
|
Subcellular Anatomy Ontology Resource Report Resource Website 1+ mentions |
Subcellular Anatomy Ontology (RRID:SCR_003486) | SAO, NIF Subcellular | ontology, data or information resource, controlled vocabulary | Ontology that describes structures from the dimensional range encompassing cellular and subcellular structure, supracellular domains, and macromolecules. It is built according to ontology development best practices (re-use of existing ontologies; formal definitions of terms; use of foundational ontologies). It describes the parts of neurons and glia and how these parts come together to define supracellular structures such as synapses and neuropil. Molecular specializations of each compartment and cell type are identified. The SAO was designed with the goal of providing a means to annotate cellular and subcellular data obtained from light and electron microscopy, including assigning macromolecules to their appropriate subcellular domains. The SAO thus provides a bridge between ontologies that describe molecular species and those concerned with more gross anatomical scales. Because it is intended to integrate into ontological efforts at these other scales, particular care was taken to construct the ontology in a way that supports such integration. | electron microscopy, cellular structure, glial cell, light microscopy, macromolecule, nervous system, neuroanatomy, neuronal cell, neuropil, subcellular anatomy, subcellular structure, supracellular structure, synapse, owl, anatomy, sub-cellular, cellular component, cell, mesoscale |
is listed by: BioPortal is listed by: OBO is related to: Jinx has parent organization: Cell Centered Database |
NIH | PMID:18974798 | Free, Available for download, Freely available | nif-0000-00206 | https://bioportal.bioontology.org/ontologies/SAO | SCR_003486 | 2026-08-04 09:40:55 | 1 | |||||
|
Kinetic Simulation Algorithm Ontology Resource Report Resource Website |
Kinetic Simulation Algorithm Ontology (RRID:SCR_003361) | KISAO | ontology, data or information resource, controlled vocabulary | An ontology that classifies algorithms available for the simulation of models in biology, their characteristics and the parameters required for their use. | owl, algorithm, simulation |
is listed by: BioPortal is listed by: OBO has parent organization: BioModels |
PMID:22027554 | Free, Available for download, Freely available | nlx_157456 | https://bioportal.bioontology.org/ontologies/KISAO | SCR_003361 | 2026-08-04 09:40:53 | 0 | ||||||
|
Vertebrate Taxonomy Ontology Resource Report Resource Website |
Vertebrate Taxonomy Ontology (RRID:SCR_003518) | VTO | ontology, data or information resource, controlled vocabulary | An ontology that includes both extinct and extant vertebrates, aiming to provide one comprehensive hierarchy. The hierarchy backbone for extant taxa is based on the NCBI taxonomy. Since the NCBI taxonomy only includes species associated with archived genetic data, to complement this, they also incorporate taxonomic information across the vertebrates from the Paleobiology Database (PaleoDB). The Teleost Taxonomy Ontology (TTO) and AmphibiaWeb (AWeb) are incorporated to provide a more authoritative hierarchy and a richer set of names for specific taxonomic groups. | owl, biology, evolution, obo-taxonomy, fossil, vertebrate, taxonmy, ontology |
uses: Teleost Taxonomy Ontology uses: AmphibiaWeb uses: Paleobiology Database uses: NCBI Taxonomy is listed by: BioPortal is listed by: OBO is listed by: Google Code has parent organization: Phenoscape |
PMID:24267744 | Open unspecified license | nlx_157625 | http://purl.obolibrary.org/obo/vto.owl, http://code.google.com/p/vertebrate-taxonomy-ontology/ | SCR_003518 | 2026-08-04 09:40:55 | 0 | ||||||
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International Classification for Patient Safety Resource Report Resource Website |
International Classification for Patient Safety (RRID:SCR_003553) | ICPS | ontology, data or information resource, controlled vocabulary | Ontology network about Patient Safety Incident. This work has been carried out by the Ontological Engineering Group, using sources from the University of Saint Etienne and the Australian Patient Safety Foundation. | owl | is listed by: BioPortal | World Health Organization ; International Classification for Patient Safety programme |
nlx_157446 | SCR_003553 | 2026-08-04 09:40:56 | 0 | ||||||||
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NEMO Ontology Resource Report Resource Website |
NEMO Ontology (RRID:SCR_003386) | NEMO Ontology | ontology, data or information resource, controlled vocabulary | Ontology that describes classes of event-related brain potentials (ERP) and their properties, including spatial, temporal, and functional (cognitive / behavioral) attributes, and data-level attributes (acquisition and analysis parameters). Its aim is to support data sharing, logic-based queries and mapping/integration of patterns across data from different labs, experiment paradigms, and modalities (EEG/MEG). | eeg, meg, owl, event-related potential, cognitive, behavioral, data sharing, erp |
is listed by: BioPortal is related to: NEMO Analysis Toolkit has parent organization: Neural ElectroMagnetic Ontologies (NEMO) Project has parent organization: SourceForge |
NIH | Free, Available for download, Freely available | nif-0000-32927 | http://purl.bioontology.org/ontology/NEMO, http://sourceforge.net/projects/nemoontologies/ | http://nemo.nic.uoregon.edu/wiki/NEMO#NEMO_Ontology | SCR_003386 | Neural ElectroMagnetic Ontology | 2026-08-04 09:40:54 | 0 | ||||
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Epoch Clinical Trial Ontology Resource Report Resource Website |
Epoch Clinical Trial Ontology (RRID:SCR_000366) | CTONT | ontology, data or information resource, controlled vocabulary | Ontology of clinical trial terminology. | owl | is listed by: BioPortal | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_157400 | SCR_000366 | 2026-08-04 09:40:07 | 0 |
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