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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Sunnybrook Research Institute; Toronto; Canada Resource Report Resource Website |
Sunnybrook Research Institute; Toronto; Canada (RRID:SCR_028214) | institution | Premier Canadian academic medical research center located in Toronto, affiliated with the University of Toronto and Sunnybrook Health Sciences Centre focusing on translating scientific discoveries into clinical practice, with specialties in medical imaging, biology, and clinical trials. | is parent organization of: Sunnybrook Research Institute Centre for Flow Cytometry and Scanning Microscopy Core Facility | ISNI 0000 0004 0469 1398 Crossref Funder ID 100011021 Wikidata Q7640792 | https://ror.org/05n0tzs53 | SCR_028214 | 2026-08-08 12:08:25 | 0 | ||||||||||
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Gustave Roussy Institute Resource Report Resource Website |
Gustave Roussy Institute (RRID:SCR_028221) | institution | Gustave Roussy is Europe’s leading comprehensive cancer center, located in Villejuif near Paris, France. It is a premier institution dedicated entirely to cancer treatment, research, and teaching, often ranked among the top oncology hospitals worldwide. Founded in 1925, it specializes in personalized medicine, rare cancers, and complex tumors. | ISNI 0000 0001 2284 9388, , GRID grid.14925.3b, Wikidata Q266227, Crossref Funder ID 501100008017 | https://ror.org/0321g0743 | SCR_028221 | 2026-08-08 12:08:25 | 0 | |||||||||||
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Vilber Lourmat Fusion FX7 imaging system Resource Report Resource Website 1+ mentions |
Vilber Lourmat Fusion FX7 imaging system (RRID:SCR_028219) | instrument resource | Image acquisition system to capture of chemiluminescence and fluorescence images. Using cooled CCD technology in combination with motorised optical lens, Fusion FX7 offers very high sensitivity and extended dynamic range. Data produced are directly compatible with image analysis software developed by VILBER and 1D image can be transformed into 3D results with Bio-1D and the Bio-Gene software. | Image acquisition system, chemiluminescence, fluorescence, images, | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_028219.pdf | Model_Number_Vilber_Fusion_FX7 | SCR_028219 | Fusion FX7 | 2026-08-08 12:08:25 | 1 | |||||||||
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Cancer Research UK Cambridge Institute Resource Report Resource Website |
Cancer Research UK Cambridge Institute (RRID:SCR_028157) | institution | Cancer research institute located on the Cambridge Biomedical Campus, focused on understanding cancer biology to develop new diagnostics and treatments. It brings together multidisciplinary research groups to translate findings into improved patient outcomes. Part of the University of Cambridge, funded by Cancer Research UK. |
is related to: Cancer Research UK Cambridge Institute Flow Cytometry and Mass Cytometry Core Facility is related to: Cancer Research UK Cambridge Institute Histopathology and In Situ Hybridisation Core Facility is related to: Cancer Research UK Cambridge Institute Microscopy Core Facility is related to: Cancer Research UK Cambridge Institute Proteomic Core Facility is related to: Cancer Research UK Cambridge Institute Research Instrumentation and Cell Services Core Facility is related to: Cancer Research UK Cambridge Institute Pre-Clinical Genome Editing Core Facility is related to: Cancer Research UK Cambridge Institute Bioinformatics Core Facility is related to: Cancer Research UK Cambridge Institute Bioanalytical Mass Spectrometry Core Facility is related to: Cancer Research UK Cambridge Institute Biological Resources Unit Core Facility is related to: Cancer Research UK Cambridge Institute Genomics Core Facility is related to: Cancer Research UK Cambridge Institute Pre-clinical Imaging Core Facility has parent organization: University of Cambridge; Cambridge; United Kingdom |
Cancer Research UK | SCR_028157 | Cancer Research UK, Cambridge Institute, CRUK Cambridge Institute, CRUK CI | 2026-08-08 12:08:24 | 0 | ||||||||||
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Biopac: Student Lab system Resource Report Resource Website |
Biopac: Student Lab system (RRID:SCR_028159) | instrument resource | Biopac Student Lab system is a flexible, integrated life science teaching solution that includes hardware, software, and curriculum materials. System to conduct basic physiology lab experiments including ECG, EEG, EMG, and EOG. BSL System uses dynamic lessons with students as subjects to increase interest and retention. Students can record data from their own bodies, guided by a detailed lab manual and full color onscreen guide, and analyze the results. Students can then compare data from different experimental conditions with others in their group and with all students in the lab. | conduct basic physiology lab experiments, ECG, EEG, EMG, EOG | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_028159.pdf | https://www.biopac.com/product/biopac-student-lab-basic-systems/#:~:text=The%20Biopac%20Student%20Lab%20Basic, experiments%20including%20ECG%2C%20EEG%2C%20EMG%2C | SCR_028159 | 2026-08-08 12:08:24 | 0 | ||||||||||
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Copperbelt University; Kitwe; Zambia Resource Report Resource Website |
Copperbelt University; Kitwe; Zambia (RRID:SCR_028151) | university | Public university in Kitwe, Zambia, established in 1987. It is a research-intensive institution focusing on technology, engineering, mining, and business. CBU operates several campuses, including the main Jambo Drive Campus in Riverside, and is known as a top Sub-Saharan African university. | is parent organization of: Copperbelt University African Centre of Excellence for Sustainable Mining Core Facility | GRID grid.442672.1 ISNI 0000 0000 9960 5667 Crossref Funder ID 501100007286 Wikidata Q339314 | https://ror.org/03fgtjr33 | SCR_028151 | 2026-08-08 12:08:16 | 0 | ||||||||||
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University of Zambia; Lusaka; Zambia Resource Report Resource Website 1+ mentions |
University of Zambia; Lusaka; Zambia (RRID:SCR_028150) | university | Oldest and largest public university established in 1965 in Lusaka. Operating under the motto "Service and Excellence," it offers over 150 undergraduate and postgraduate programs across 13 schools, with major campuses at Great East Road and Ridgeway. | is parent organization of: University of Zambia Africa Centre of Excellence for Infectious Diseases of Humans and Animals Core Facility | GRID grid.12984.36 ISNI 0000 0000 8914 5257 Wikidata Q2096836 | https://ror.org/03gh19d69 | SCR_028150 | 2026-08-08 12:08:24 | 1 | ||||||||||
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Texas State University E-Beam Evaporator system Resource Report Resource Website |
Texas State University E-Beam Evaporator system (RRID:SCR_028200) | instrument resource | Facility Angstrom Engineering EvoVac is a thin film deposition system based on evaporation of source material that can deposit a wide range of materials including metals and inorganic compounds. Resistive evaporation results when electrical current heats a boat filled with source material whereas electron beam evaporation utilizes filament emission and magnetic focusing of a high energy electron beam which is swept within a crucible of deposition material. The deposition processes occur in a vacuum to permit long mean free paths from indexed multi-pocket sources at rates and terminal thicknesses controlled using a quartz rate sensor. The substrate can be heated, rotated, and plasma cleaned to control film morphology, uniformity, and adhesion. Vacuum-based deposition system that uses an electron beam to evaporate materials for high-purity thin film coatings with precise thickness control. | Texas State University Nanofabrication Research Service Center Core Facility, electron beam evaporation, PVD, thin films, vacuum deposition, coatings |
is used by: Texas State University Nanofabrication Research Service Center Core Facility has parent organization: Texas State University; Texas; USA |
Restricted | https://www.ajaint.com/systems-evaporation | SCR_028200 | , E-Beam Evaporator (PVD75 E-Beam), E-Beam Deposition System, Electron Beam Evaporator | 2026-08-08 12:08:25 | 0 | ||||||||
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Texas State University Oxford ICP/RIE system Resource Report Resource Website |
Texas State University Oxford ICP/RIE system (RRID:SCR_028203) | instrument resource | Facility Oxford ICP-RIE Plaslab 180 utilizes a 3kW RF power supply to generate a remote plasma of Cl2, BCl3, H2, Ar, NF3, O2, SF6, and/or C4F8 gas species that can be further accelerated (300W table bias) toward a substrate resulting in a combination of physical and chemical dry etching for material removal. The turbomolecular pumped system achieves a base pressure < 1E-7 Torr and is equipped with chuck temperature control from -110 to 350 degrees C. Advanced dry etching system combining inductively coupled plasma (ICP) and reactive ion etching (RIE) for highly anisotropic, high-precision material removal in semiconductor and nanofabrication processes. | ICP, RIE, dry etching, plasma etching, semiconductor fabrication, nanofabrication | is used by: Texas State University Nanofabrication Research Service Center Core Facility | Restricted | SCR_028203 | Oxford ICP/RIE (PlasmaPro 100) | 2026-08-08 12:08:25 | 0 | |||||||||
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Texas State University PECVD System Resource Report Resource Website |
Texas State University PECVD System (RRID:SCR_028202) | instrument resource | Facility plasma-enhanced chemical vapor deposition (PECVD) system from AGS utilizes plasma decomposition of silane (SiH4) in in presence of an oxygen or nitrogen source to deposit SiO2 and Si3N4 dielectric thin films. The capacitive coupled plasma reduces the required temperature for deposition to a minimum of ~150degC. A plasma-enhanced chemical vapor deposition system is used to deposit high-quality thin films at reduced temperatures for semiconductor and materials applications. | PECVD, plasma deposition, thin films, dielectric layers, semiconductor | is used by: Texas State University Nanofabrication Research Service Center Core Facility | Restricted | https://asrc.gc.cuny.edu/facilities/nanofabrication/instruments/deposition/, https://sro.txst.edu/sro-facilities/sro-nrsc.html | SCR_028202 | , PECVD System (Versaline PECVD), Plasma-Enhanced Chemical Vapor Deposition system | 2026-08-08 12:08:25 | 0 | ||||||||
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pIRS Resource Report Resource Website 50+ mentions |
pIRS (RRID:SCR_002519) | simulation software, software application, software resource | Software for de novo data simulation. It uses empirical distribution to reproduce Illumina pair-end reads with real distribution of substitution sequencing errors, quality values and GC%-depth bias. | de novo data simulation, empirical distribution, illumina pair-end read, substitution sequencing error, gc depth bias | is listed by: OMICtools | PMID:22508794 | Free, Available for download, Freely available | OMICS_00254 | SCR_002519 | pIRS (profile based Illumina pair-end Reads Simulator), profile based Illumina pair-end Reads Simulator | 2026-08-09 09:03:35 | 74 | |||||||
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Bioassay Ontology Resource Report Resource Website 1+ mentions |
Bioassay Ontology (RRID:SCR_002638) | BAO | data or information resource, controlled vocabulary, ontology | Ontology to describe and categorize chemical biology and drug screening assays and their results including high-throughput screening (HTS) data for the purpose of categorizing assays and data analysis. BAO is an extensible, knowledge-based, highly expressive (currently SHOIQ(D)) description of biological assays making use of descriptive logic based features of the Web Ontology Language (OWL). BAO currently has over 700 classes and also makes use of several other ontologies. It describes several concepts related to biological screening, including Perturbagen, Format, Meta Target, Design, Detection Technology, and Endpoint. Perturbagens are perturbing agents that are screened in an assay; they are mostly small molecules. Assay Meta Target describes what is known about the biological system and / or its components interrogated in the assay (and influenced by the Perturbagen). Meta target can be directly described as a molecular entity (e.g. a purified protein or a protein complex), or indirectly by a biological process or event (e.g. phosphorylation). Format describes the biological or chemical features common to each test condition in the assay and includes biochemical, cell-based, organism-based, and variations thereof. The assay Design describes the assay methodology and implementation of how the perturbation of the biological system is translated into a detectable signal. Detection Technology relates to the physical method and technical details to detect and record a signal. Endpoints are the final HTS results as they are usually published (such as IC50, percent inhibition, etc). BAO has been designed to accommodate multiplexed assays. All main BAO components include multiple levels of sub-categories and specification classes, which are linked via object property relationships forming an expressive knowledge-based representation. | chemical biology, drug screening, assay, perturbation, high-throughput screening, owl |
is used by: LINCS Information Framework is listed by: BioPortal is parent organization of: G Protein-Coupled Receptor BioAssays Ontology |
Free, Freely available | nlx_156065 | SCR_002638 | 2026-08-09 09:03:30 | 7 | ||||||||
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GUDMAP Ontology Resource Report Resource Website 1+ mentions |
GUDMAP Ontology (RRID:SCR_002637) | GUDMAP Ontology | data or information resource, resource, controlled vocabulary, ontology | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 14,2026. A high-resolution ontology has been developed by members of the GUDMAP consortium to describe the subcompartments of the developing murine genitourinary tract. This ontology incorporates what can be defined histologically and begins to encompass other structures and cell types already identified at the molecular level. The GUDMAP ontology encompasses Theiler stage (TS) 17-27 of development as well as the sexually mature adult. It has been written as a partonomic, text-based, hierarchical ontology that, for the embryological stages, has been developed as a high-resolution expansion of the existing Edinburgh Mouse Atlas Project (EMAP) ontology. It also includes group terms for well-characterized structural and/or functional units comprising several sub-structures, such as the nephron and juxtaglomerular complex. Each term has been assigned a unique identification number. Synonyms have been used to improve the success of query searching and maintain wherever possible existing EMAP terms relating to this organ system. | murine, genitourinary tract, development, in situ hybridization, theiler stage, adult mouse, newborn mouse, adolescent mouse, embryonic mouse |
is used by: GATACA GUDMAP Gene Explorer is used by: Kidney Development Database lists: GOA lists: EuReGene lists: Embryo Images Normal and Abnormal Mammalian Development lists: Stem Cell Genome Anatomy Projects lists: Eurexpress lists: Gene Expression Database lists: ToppGene Suite is related to: eMouseAtlas is related to: GenePaint Interactive Anatomy Atlas is related to: EMAGE Gene Expression Database is related to: Gene Expression Omnibus has parent organization: GenitoUrinary Development Molecular Anatomy Project |
NIDDK DK070136-02; NIDDK DK070181; NIDDK DK07020001; European Union FP6 005085 |
PMID:17452023 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_156063 | SCR_002637 | 2026-08-09 09:03:37 | 2 | ||||||
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PANDA Resource Report Resource Website 100+ mentions |
PANDA (RRID:SCR_002511) | PANDA | software toolkit, software resource | Software matlab toolbox for pipeline processing of diffusion MRI images. For each subject, PANDA can provide outputs in 2 types: i) diffusion parameter data that is ready for statistical analysis; ii) brain anatomical networks constructed by using diffusion tractography. Particularly, there are 3 types of resultant diffusion parameter data: WM atlas-level, voxel-level and TBSS-level. The brain network generated by PANDA has various edge definitions, e.g. fiber number, length, or FA-weighted. The key advantages of PANDA are as follows: # fully-automatic processing from raw DICOM/NIFTI to final outputs; # Supporting both sequential and parallel computation. The parallel environment can be a single desktop with multiple-cores or a computing cluster with a SGE system; # A very friendly GUI (graphical user interface). | analyze, computational neuroscience, connectivity analysis, dicom, format conversion, gnome, linux, macos, matlab, modeling, magnetic resonance, nifti, posix/unix-like, tensor metric, tractography, workflow, xnat pipeline, diffusion mri, chinese, connectome, diffusion metrics, network, pipeline, structural connectivity |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Beijing Normal University; Beijing; China |
National Natural Science Foundation of China ; Beijing Nova Program ; 973 program ; State Key Laboratory of Cognitive Neuroscience and Learning |
PMID:23439846 | Free, Available for download, Freely available | nlx_155911 | http://www.nitrc.org/projects/panda | SCR_002511 | PANDA: a pipeline tool for diffusion MRI, PANDA (Pipeline for Analyzing braiN Diffusion imAges), Pipeline for Analyzing braiN Diffusion imAges, PANDA: Pipeline for Analyzing braiN Diffusion imAges, panda-tool | 2026-08-09 09:03:35 | 427 | ||||
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Nirfast Resource Report Resource Website 10+ mentions |
Nirfast (RRID:SCR_002503) | NIRFAST | software toolkit, software resource | Software package for modeling Near-Infrared light transport in tissue and image reconstruction. This includes: Standard single wavelength absorption and reduced scatter, Multi-wavelength spectrally constrained models and Fluorescence models. | optical imaging, tissue |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Dartmouth College; New Hampshire; USA |
PMID:20182646 PMID:23942632 |
Free, Available for download, Freely available | nlx_155902 | http://www.nitrc.org/projects/nirfast | SCR_002503 | 2026-08-09 09:03:29 | 35 | ||||||
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Cognitive Atlas Resource Report Resource Website 10+ mentions |
Cognitive Atlas (RRID:SCR_002793) | Cognitive Atlas | data or information resource, controlled vocabulary, ontology | Knowledge base (or ontology) that characterizes the state of current thought in cognitive science that captures knowledge from users with expertise in psychology, cognitive science, and neuroscience. There are two basic kinds of knowledge in the knowledge base. Terms provide definitions and properties for individual concepts and tasks. Assertions describe relations between terms in the same way that a sentence describes relations between parts of speech. The goal is to develop a knowledge base that will support annotation of data in databases, as well as supporting improved discourse in the community. It is open to all interested researchers. A fundamental feature of the knowledge base is the desire and ability to capture not just agreement but also disagreement regarding definitions and assertions. Thus, if you see a definition or assertion that you disagree with, then you can assert and describe your disagreement. The project is led by Russell Poldrack, Professor of Psychology and Neurobiology at the University of Texas at Austin in collaboration with the UCLA Center for Computational Biology (A. Toga, PI) and UCLA Consortium for Neuropsychiatric Phenomics (R. Bilder, PI). Most tasks used in cognitive psychology research are not identical across different laboratories or even within the same laboratory over time. A major advantage of anchoring cognitive ontologies to the measurement level is that the strategy for determining changes in task properties is easier than tracking changes in concept definitions and usage. The process is easier because task parameters are usually (if not always) operationalized objectively, offering a clear basis to judge divergence in methods. The process is also easier because most tasks are based on prior tasks, and thus can more readily be considered descendants in a phylogenetic sense. | cognitive function, cognitive phenotype, cognitive process, cognitive science, cognitive state, human, cognitive ontology, cognitive task, experimental task, mental construct, concept, task, eeg, meg, electrocorticography, magnetic resonance, ontology, pet, spect, knowledge environment |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: Speech Perception is related to: Brainspell has parent organization: University of Texas at Austin; Texas; USA is parent organization of: Cognitive Atlas Ontology |
NIMH RO1MH082795 | PMID:21922006 PMID:19634038 |
Free, Freely Available | nif-0000-24591 | http://www.nitrc.org/projects/cogatlas | SCR_002793 | cognitive atlas - a collaboratively developed cognitive science ontology | 2026-08-09 09:03:36 | 38 | ||||
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OBD-PKB Interface Resource Report Resource Website 1+ mentions |
OBD-PKB Interface (RRID:SCR_002882) | data or information resource, controlled vocabulary, ontology | THIS RESOURCE IS NO LONGER IN SERVICE, documented August 23, 2016. This interface is for exploring data collected as part of the NIF Neurodegenerative Disease Ontology project. Not generally intended for public consumption yet, but people are welcome to look - large caveat emptor applies. Sponsors: This resource is part of the NIF project. | data, disease, neurodegenerative, software | has parent organization: University of California at Berkeley; Berkeley; USA | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-25570 | SCR_002882 | OBD-PKB Interface | 2026-08-09 09:03:38 | 1 | ||||||||
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BioCaster Ontology Resource Report Resource Website |
BioCaster Ontology (RRID:SCR_003122) | BCO | data or information resource, controlled vocabulary, ontology | A multilingual application ontology aimed at the early detection of public health events in the media. It aims to describe the terms and relations necessary to detect and risk assess public health events in the grey literature at an early stage; and bridge the gap between the (multilingual) grey literature and existing standards in biomedicine. The BCO focuses on the usage of terms and relations within informal unstructured reports which are often made at a pre-diagnostic stage of a disease outbreak by non-medically trained reporters. This is done to provide monitoring and early warning about public health hazards from online media reports. | public health, text-mining, infectious disease, owl, skos, database |
has parent organization: Google Code has parent organization: BioCaster |
Infectious disease | Free, Available for download, Freely available | nlx_156797 | http://born.nii.ac.jp/_dev/static/ontology | SCR_003122 | biocaster-ontology | 2026-08-09 09:03:40 | 0 | |||||
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Brian Simulator Resource Report Resource Website 10+ mentions |
Brian Simulator (RRID:SCR_002998) | Brian | simulation software, software application, software resource | Software Python package for simulating spiking neural networks. Useful for neuroscientific modelling at systems level, and for teaching computational neuroscience. Intuitive and efficient neural simulator. | simulation, spiking, neuron, brain, communication, modelling, computational neuroscience, python, spiking neuron, neural network |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Ecole Normale Superieure; Paris; France |
European Union ; French National Research Agency ; CNRS ; Ecole Normale Superieure; Paris; France |
DOI:10.7554/eLife.47314 DOI:10.3389/neuro.01.026.2009 DOI:10.7554/eLife.47314 |
Free, Available for download, Freely available | nif-0000-30223 | http://www.nitrc.org/projects/brian | SCR_002998 | Brian 2, Brian spiking neural network simulator, Brian2 | 2026-08-09 09:03:40 | 29 | ||||
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Lipid Ontology Resource Report Resource Website |
Lipid Ontology (RRID:SCR_003349) | LiPrO | data or information resource, controlled vocabulary, ontology | An ontology that describes the LIPIDMAPS nomenclature classification explicitly using description logics (OWL-DL). Lipid classes are organized hierarchically with the super-classes restricted by generic necessary conditions. More specific necessary conditions are used to define membership requirements for sub classes of lipid according to appropriate functional groups. Lipid research is increasingly integrated within systems level biology such as lipidomics where lipid classification is required before appropriate annotation of chemical functions can be applied. | owl, lipid, ontology |
is listed by: BioPortal is listed by: OBO |
Free, Available for download, Freely available | nlx_157458 | http://www.lipidprofiles.com/LipidOntology | SCR_003349 | 2026-08-09 09:03:43 | 0 |
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