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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Ascomycete Phenotype Ontology Resource Report Resource Website |
Ascomycete Phenotype Ontology (RRID:SCR_003254) | APO | data or information resource, controlled vocabulary, ontology | A structured controlled vocabulary for the phenotypes of Ascomycete fungi. | obo, phenotype |
is listed by: BioPortal is listed by: OBO has parent organization: SGD |
Free, Freely available | nlx_157321 | http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/phenotype/ascomycete_phenotype.obo | SCR_003254 | 2026-08-09 09:03:42 | 0 | |||||||
|
Measurement Method Ontology Resource Report Resource Website |
Measurement Method Ontology (RRID:SCR_003373) | MMO | data or information resource, controlled vocabulary, ontology | An ontology designed to represent the variety of methods used to make qualitative and quantitative clinical and phenotype measurements both in the clinic and with model organisms. | obo, phenotype, clinical |
is listed by: SourceForge is listed by: BioPortal is listed by: OBO |
PMID:22654893 | Free, Available for download, Freely available | nlx_157468 | http://sourceforge.net/projects/phenoonto/, ftp://rgd.mcw.edu/pub/ontology/measurement_method/measurement_method.obo | SCR_003373 | 2026-08-09 09:03:44 | 0 | ||||||
|
Beta Cell Genomics Ontology Resource Report Resource Website |
Beta Cell Genomics Ontology (RRID:SCR_003259) | OBI BCGO, BCGO | data or information resource, controlled vocabulary, ontology | An application ontology built for the Beta Cell Genomics database aiming to support database annotation, complicated semantic queries, and automated cell type classification. The ontology is developed using Basic Formal Ontology (BFO) as upper ontology, Ontology for Biomedical Investigations (OBI) as ontology framework and integrated subsets of multiple OBO Foundry (candidate) ontologies. Current the BCGO contains 2383 classes including terms referencing to 24 various OBO Foundry ontologies including CL, CLO, UBERON, GO, PRO, UO, etc. | owl, cell type, classification, ontology, beta cell genomics |
uses: BFO uses: Ontology for Biomedical Investigations is listed by: BioPortal is listed by: OBO is listed by: Google Code is related to: Information Artifact Ontology has parent organization: Beta Cell Biology Consortium |
Free, Available for download, Freely available | nlx_157324 | https://github.com/obi-bcgo/bcgo | SCR_003259 | 2026-08-09 09:03:43 | 0 | |||||||
|
Malaria Ontology Resource Report Resource Website |
Malaria Ontology (RRID:SCR_003369) | IDOMAL | data or information resource, controlled vocabulary, ontology | An application ontology to cover all aspects of malaria (clinical, epidemiological, biological, etc) as well as the intervention attempts to control it, extending the infectious disease ontology (IDO). | obo, health, pathological, clinical, epidemiological, biological, intervention |
is listed by: BioPortal is listed by: OBO has parent organization: AnoBase: An Anopheles database |
Malaria | Free, Available for download, Freely available | nlx_157464 | http://purl.obolibrary.org/obo/idomal.obo, http://anobase.vectorbase.org/idomal/IDOMAL.obo | SCR_003369 | 2026-08-09 09:03:44 | 0 | ||||||
|
Minimal Anatomical Terminology Resource Report Resource Website |
Minimal Anatomical Terminology (RRID:SCR_003385) | MAT | data or information resource, controlled vocabulary, ontology | An ontology of minimal set of terms for anatomy. | obo, anatomy, organismal, ontology |
is listed by: BioPortal is listed by: OBO has parent organization: eMouseAtlas |
Free, Available for download, Freely available | nlx_157480 | http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/anatomy/gross_anatomy/animal_gross_anatomy/multispecies/minimal_anatomical_terminology.obo | SCR_003385 | 2026-08-09 09:03:44 | 0 | |||||||
|
Biological Collections Ontology Resource Report Resource Website |
Biological Collections Ontology (RRID:SCR_003262) | BCO | data or information resource, controlled vocabulary, ontology | Ontology developed as an application ontology as part of the Biocode Commons project whose goal is to support the interoperability of biodiversity data, including data on museum collections, environmental and metagenomic samples, and ecological surveys. It includes consideration of the distinctions between individuals, organisms, voucher specimens, lots, and samples the relations between these entities, and processes governing the creation and use of samples. Within scope as well are properties including collector, location, time, storage environment, containers, institution, and collection identifiers. | owl, interoperability, biodiversity, museum collection, environmental sample, metagenomic sample, ecological survey |
is listed by: BioPortal is listed by: OBO is listed by: Google Code is related to: Information Artifact Ontology |
PMID:24595056 | Free, Available for download, Freely available | nlx_157333 | http://purl.obolibrary.org/obo/bco.owl, http://purl.bioontology.org/ontology/BCO | SCR_003262 | 2026-08-09 09:03:42 | 0 | ||||||
|
Common Anatomy Reference Ontology Resource Report Resource Website |
Common Anatomy Reference Ontology (RRID:SCR_003296) | CARO | data or information resource, controlled vocabulary, ontology | An ontology developed to facilitate interoperability between existing anatomy ontologies for different species, and to provide a template for building new anatomy ontologies. | obo, anatomy, organismal, ontology, interoperability, template |
is used by: Teleost Anatomy Ontology is listed by: BioPortal is listed by: OBO |
Free, Freely available | nlx_157369 | https://bioportal.bioontology.org/ontologies/CARO | SCR_003296 | 2026-08-09 09:03:43 | 0 | |||||||
|
Clinical Measurement Ontology Resource Report Resource Website |
Clinical Measurement Ontology (RRID:SCR_003291) | CMO | data or information resource, controlled vocabulary, ontology | An ontology designed to be used to standardize morphological and physiological measurement records generated from clinical and model organism research and health programs. | obo, phenotype, clinical, measurement, morphology, physiology |
is listed by: SourceForge is listed by: BioPortal is listed by: OBO has parent organization: Medical College of Wisconsin; Wisconsin; USA |
PMID:22654893 | Free, Freely available | nlx_157364 | http://sourceforge.net/projects/phenoonto/, ftp://rgd.mcw.edu/pub/ontology/clinical_measurement/clinical_measurement.obo | SCR_003291 | 2026-08-09 09:03:44 | 0 | ||||||
|
Chemical Methods Ontology Resource Report Resource Website 1+ mentions |
Chemical Methods Ontology (RRID:SCR_003286) | CHMO, RSC CMO | data or information resource, controlled vocabulary, ontology | An ontology that describes methods used to collect data in chemical experiments, such as mass spectrometry and electron microscopy; preparing and separating material for further analysis, such as sample ionization, chromatography, and electrophoresis; and synthesizing materials, such as epitaxy and continuous vapor deposition. It also describes the instruments used in these experiments, such as mass spectrometers and chromatography columns. It is intended to be complementary to the Ontology for Biomedical Investigations (OBI). | obo, chemistry, analytical chemistry, physical chemistry, material chemistry, method, health, mass spectrometry, electron microscopy, chemical experiment, sample ionization, chromatography, electrophoresis, instrument |
is listed by: BioPortal is listed by: OBO is listed by: Google Code is listed by: Ontobee is related to: Information Artifact Ontology is related to: Ontology for Biomedical Investigations has parent organization: Royal Society of Chemistry |
Free, Available for download, Freely available | nlx_157363 | http://purl.bioontology.org/ontology/CHMO, http://purl.obolibrary.org/obo/chmo.owl, http://www.ontobee.org/browser/index.php?o=CHMO | https://code.google.com/p/rsc-cmo/ | SCR_003286 | RSC Chemical Methods Ontology | 2026-08-09 09:03:42 | 1 | |||||
|
Fission Yeast Phenotype Ontology Resource Report Resource Website |
Fission Yeast Phenotype Ontology (RRID:SCR_003315) | FYPO | data or information resource, controlled vocabulary, ontology | A formal ontology of phenotypes observed in fission yeast that is being developed to support the comprehensive and detailed representation of phenotypes in PomBase, the online fission yeast resource. Its scope is similar to that of the Ascomycete Phenotype Ontology (APO), but FYPO includes more detailed pre-composed terms as well as computable definitions. | obo, phenotype |
is listed by: BioPortal is listed by: OBO has parent organization: PomBase |
Free, Available for download, Freely available | nlx_157405 | https://sourceforge.net/p/pombase/code/HEAD/tree/phenotype_ontology/releases/latest/fypo.obo?format=raw | https://sourceforge.net/apps/trac/pombase/wiki/FissionYeastPhenotypeOntology | SCR_003315 | 2026-08-09 09:03:43 | 0 | ||||||
|
Roche: cobas e 602 analytical unit Resource Report Resource Website 1+ mentions |
Roche: cobas e 602 analytical unit (RRID:SCR_026640) | instrument resource | Immunochemistry analyzer as mid-volume throughput immunochemistry module that performs broad range of heterogeneous immunoassay tests using ElectroChemiLuminescence (ECL) technology. Offers Heterogeneous immunoassays, Throughput of up to 170 tests/hour, 25 reagent positions, Reagent cassette loading/unloading during standby, Carryover-free disposable tips, Clot and air bubble detection. | Immunochemistry analyzer, mid-volume throughput immunochemistry module, | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_026640.pdf | Model_Number_cobas_e_602 | https://diagnostics.roche.com/us/en/products/systems/cobas-8000-analyzer-series-sys-128.html | SCR_026640 | , cobas e 602 analytical unit, cobas e 602 analytical modul | 2026-08-08 12:07:51 | 2 | ||||||||
|
BioBox Resource Report Resource Website 1+ mentions |
BioBox (RRID:SCR_026642) | web application, software resource | Platform to help scientists organize all biological knowledge into singular, unified resource that is searchable, accessible and capable of answering the most difficult questions in science. Used for bioinformatics analysis. | BioBox platform, organize all biological knowledge, unified resource, searchable, accessible, bioinformatics analysis, | Free, Freely available | SCR_026642 | 2026-08-08 12:07:48 | 1 | |||||||||||
|
Abbott: ARCHITECT i2000SR immunoassay analyzer Resource Report Resource Website 10+ mentions |
Abbott: ARCHITECT i2000SR immunoassay analyzer (RRID:SCR_026638) | instrument resource | Analyzer offers maximum throughput of up to 200 tests per hour. Featuring load-up capacity of 135 samples with 35 priority and 100 routine areas. Has 25 refrigerated reagent positions. Designed for efficient and accurate analysis of various biological samples, including serum, plasma, and other bodily fluids. | serum, plasma, bodily fluids, immunoassay analyzer, | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_026638.pdf | Model_Number_Architect_i2000SR | SCR_026638 | Architect i2000SR | 2026-08-08 12:07:50 | 14 | |||||||||
|
Agilent: Seahorse XF Pro Analyzer Resource Report Resource Website 1+ mentions |
Agilent: Seahorse XF Pro Analyzer (RRID:SCR_026694) | instrument resource | Agilent Seahorse XF Pro analyzer measures and reports the oxygen consumption rate (OCR), proton efflux rate (PER) or extracellular acidification rate (ECAR), as well as ATP production rates of live cells in a 96-well format. This analyzer features excellent OCR precision at low rates, verified performance, optimized temperature control, and is automation enabled. The XF Pro analyzer is also equipped with advanced software, standardized workflows, and advanced data analytics available in the Agilent Seahorse Analytics software. These features greatly simplify the entire XF assay experience, from assay design to data QC and interpretation. | oxygen consumption rate, proton efflux rate, extracellular acidification rate, ATP production rates, live cells, | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_026694.pdf | Model_Number_Seahorse_XF_Pro | SCR_026694 | Seahorse XF Pro Analyzer | 2026-08-08 12:07:51 | 2 | |||||||||
|
Leica: DMi8 Inverted Microscope Resource Report Resource Website 10+ mentions |
Leica: DMi8 Inverted Microscope (RRID:SCR_026672) | instrument resource | Leica DMi8 microscope is an inverted light microscope, intended as a general microscope for routine examinations of biological specimens. | inverted light microscope, microscope, | is used by: Icahn School of Medicine at Mount Sinai Microscopy and Advanced Bioimaging Core Facility | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_026672.pdf | Model_Number_Leica_DMi8 | SCR_026672 | Leica DMi8, Leica DMi8 microscope | 2026-08-08 12:07:51 | 12 | ||||||||
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Azure Biosystems: Chemiluminescent Western Blot Imager Azure 300 Resource Report Resource Website 1+ mentions |
Azure Biosystems: Chemiluminescent Western Blot Imager Azure 300 (RRID:SCR_026671) | instrument resource | Multichannel, multimodal imager, with visible fluorescence, visible light, and UV excitation channels. The system is fully upgradeable to fluorescent Western Blot Imaging System. | Imager, visible fluorescence, visible light, UV excitation channels | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_026671.pdf | Model_Number_Azure_300 | SCR_026671 | 2026-08-08 12:07:52 | 4 | ||||||||||
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Singular Genomics: G4X Spatial Sequencer Resource Report Resource Website |
Singular Genomics: G4X Spatial Sequencer (RRID:SCR_026684) | instrument resource | Ultra high-throughput, spatial sequencing platform, for integrated multiomic analysis of FFPE samples at subcellular resolution. Spatial sequencing platform capable of simultaneous direct RNA. | spatial sequencing platform, integrated multiomic analysis, FFPE samples, subcellular resolution, | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_026684.pdf | Model_Number_G4X | SCR_026684 | G4X Spatial Sequencer | 2026-08-08 12:07:52 | 0 | |||||||||
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EpiJen Resource Report Resource Website 1+ mentions |
EpiJen (RRID:SCR_026689) | web application, software resource | Web server for multistep T cell epitope prediction. Also considers proteasome cleavage and TAP binding, therefore it is able to mimic the MHC binding machnism in real life. At present only HLA class I alleles are included in the prediction. | multistep T cell epitope prediction, epitopt prediction, proteasome cleavage, TAP binding, HLA class I alleles, | GlaxoSmithKline ; UK Department of Health |
PMID:16533401 | Free, Freely available | SCR_026689 | 2026-08-08 12:07:51 | 6 | |||||||||
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RWD Life Science: Standard Stereotaxic Holder Resource Report Resource Website 1+ mentions |
RWD Life Science: Standard Stereotaxic Holder (RRID:SCR_026656) | instrument resource | Compact stereotaxic instrument designed for use with knock-out and transgenic mice. Instrument includes 100 micron, 3-axes left-hand manipulator arm, mouse snout clamp and tooth bar, dual-sided ear bars, and corner clamp probe holder. Stoelting’s Motorized Stereotaxic Manipulator Arms are designed for fast, accurate positioning during stereotaxic surgery. Motorized manipulator arms employ touchscreen display for easy-to-control movement of each axis. Manual movement is available anytime. Optional Drill feature available. | stereotaxic instrument, accurate positioning, stereotaxic surgery, | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_026656.pdf | SCR_026656 | , Standard Stereotaxic Instruments, Standard Stereotaxic Holder | 2026-08-08 12:07:48 | 1 | ||||||||||
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3D-Hub-O platform Resource Report Resource Website 1+ mentions |
3D-Hub-O platform (RRID:SCR_026655) | service resource | 3D-Hub-O specializes in production, manipulation and analysis of organoids from normal and tumor tissues. Physiological platform for research on living pathological tissues. Platform participates in knowledge transfer through customized training of specific organoid culture carried out by platform staff. | organoids production, organoids manipulation, organoids analysis, normal tissues, tumor tissues, | Open | SCR_026655 | 3D-Hub-O, , 3D Hub-O organoid platform | 2026-08-08 12:07:50 | 1 |
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