Searching the RRID Resource Information Network

Our searching services are busy right now. Please try again later

  • Register
X
Forgot Password

If you have forgotten your password you can enter your email here and get a temporary password sent to your email.

X

Leaving Community

Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.

No
Yes

Preparing word cloud

×

SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

Search

Type in a keyword to search

Filter by records added date
See new records

Options


Current Facets and Filters

  • Related Resources:neuroimaging tools and resources collaboratory (nitrc) (facet)

Facets


Recent searches

Snippet view Table view
Click the to add this resource to a Collection

786 Results - per page

Show More Columns | Download 786 Result(s)

Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Specification URL Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
MCIC
 
Resource Report
Resource Website
10+ mentions
MCIC (RRID:SCR_002310) MCIC data or information resource, data set Expertly collected, well-curated data sets consisting of comprehensive clinical characterization and raw structural, functional and diffusion-weighted DICOM images in schizophrenia patients and gender and age-matched controls are now accessible to the scientific community through an on-line data repository (coins.mrn.org). This data repository will be useful to 1) educators in the fields of neuroimaging, medical image analysis and medical imaging informatics who need exemplar data sets for courses and workshops; 2) computer scientists and software algorithm developers for testing and validating novel registration, segmentation, and other analysis software; and 3) scientists who can study schizophrenia by further analysis of this cohort and/or by pooling with other data. clinical neuroinformatics, dicom, magnetic resonance, image collection, clinical assessment, diagnose, healthy control, neuropsychological test, psychiatric disorder, schizoaffective disorder, schizophrenia, diffusion-weighted is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
has parent organization: Mind Research Network - COINS
Schizophrenia, Normal control PMID:23760817 COINS Data Use Agreement nlx_155657 SCR_002310 2026-09-19 12:58:34 34
Laboratory of Neuro Imaging
 
Resource Report
Resource Website
50+ mentions
Laboratory of Neuro Imaging (RRID:SCR_001922) LONI biomedical technology resource center, training resource Biomedical technology resource center specializing in novel approaches and tools for neuroimaging. It develops novel strategies to investigate brain structure and function in their full multidimensional complexity. There is a rapidly growing need for brain models comprehensive enough to represent brain structure and function as they change across time in large populations, in different disease states, across imaging modalities, across age and sex, and even across species. International networks of collaborators are provided with a diverse array of tools to create, analyze, visualize, and interact with models of the brain. A major focus of these collaborations is to develop four-dimensional brain models that track and analyze complex patterns of dynamically changing brain structure in development and disease, expanding investigations of brain structure-function relations to four dimensions. anatomic, animal, brain, brain function, brain structure, cerebral metabolism, human, mapping, neurobiological, software, neuroimaging, fmri, mri, neuroimaging, software, brain mapping, computational software, magnetic resonance is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
is related to: Wavelet Analysis of Image Registration
is related to: Sub-Volume Thresholding Analysis
is related to: jViewbox
is related to: MultiPhase-SEG
is related to: LONI Java Image I/O Plugins
is related to: DualSurfaceMin
is related to: Charged Fluid Model for Brain Image Segmentation
is related to: MINC/Atlases
has parent organization: University of Southern California Keck School of Medicine; California; USA
is parent organization of: Center for Computational Biology at UCLA
is parent organization of: LONI Visualization Tool
is parent organization of: International Consortium for Brain Mapping
is parent organization of: LONI Provenance Editor
is parent organization of: TetraMetrix
is parent organization of: Synchronized Histological Image Viewing Architecture
is parent organization of: LONI ShapeViewer
is parent organization of: LONI ShapeTools
is parent organization of: FFT Library
is parent organization of: Mouse BIRN Atlasing Toolkit
is parent organization of: MGH-USC Human Connectome Project
is parent organization of: Mouse Connectome Project
is parent organization of: LONI Inspector
is parent organization of: Parkinson's Progression Markers Initiative
is parent organization of: BrainSolution
is parent organization of: BrainGraph Editor
is parent organization of: INVIZIAN
is parent organization of: LONI Brain Parser
is parent organization of: LONI De-identification Debablet
is parent organization of: iTools
is parent organization of: Pipeline Neuroimaging VirtualEnvironment
is parent organization of: MultiTracer
is parent organization of: International Consortium for Brain Mapping
NCRR 5 P41 RR013642 LONI Software License nif-0000-10494 http://www.nitrc.org/projects/loni http://loni.ucla.edu/ SCR_001922 UCLA Laboratory of Neuro Imaging, Laboratory of Neuroimaging, UCLA LONI, USC Laboratory of Neuro Imaging 2026-09-19 12:58:33 65
NITRC Computational Environment
 
Resource Report
Resource Website
1+ mentions
NITRC Computational Environment (RRID:SCR_002171) NITRC-CE computational hosting, service resource An on-demand, cloud based computational virtual machine pre-installed with popular NITRC neuroimaging tools built using NeuroDebian. For a listing of current NITRC-CE packages visit: http://www.nitrc.org/ce-packages. You can also use the "public Amazon Machine Interface (AMI)" to conduct your analyses on the Amazon EC2 platform. image analysis software, neuroimaging, neuroimaging tool is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
is related to: neurodebian
is related to: NITRC Enhanced Services
has parent organization: Amazon Web Services
Free, Freely available nlx_155889 http://www.nitrc.org/ce-marketplace SCR_002171 NITRC Computational Environment in Amazon Marketplace 2026-09-19 12:58:34 1
Grantees Meeting for NITRC
 
Resource Report
Resource Website
Grantees Meeting for NITRC (RRID:SCR_000419) data or information resource, portal, project portal This project is meant for planning the NITRC Grantee meetings. A website for organizing meetings for the Neuroimaging Informatics Tools and Resources Clearinghouse, to facilitate participants meeting one another, and promote discussion of common interests and collaboration. meeting, neuroimaging, nitrc, informatics, tools, collaboration, discussion is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) Free, Freely available nlx_155875, SCR_014081 http://www.nitrc.org/plugins/mwiki/index.php/nihgrantees:2009Meeting SCR_000419 2026-09-19 12:55:48 0
Manually Labeled MRI Brain Scan Database
 
Resource Report
Resource Website
1+ mentions
Manually Labeled MRI Brain Scan Database (RRID:SCR_009604) data or information resource, database Collection of neuroanatomically labeled MRI brain scans, created by neuroanatomical experts. Regions of interest include the sub-cortical structures (thalamus, caudate, putamen, hippocampus, etc), along with ventricles, brain stem, cerebellum, and gray and white matter and sub-divided cortex into parcellation units that are defined by gyral and sulcal landmarks. collection, neuroanatomical, MRI, brain, scan, data, thalamus, caudate, putamen, hippocampus, ventricle, cerebellum, cortex is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
has parent organization: Neuromorphometrics
works with: MRI Neuroanatomy Labeling Services
works with: MRI Neuroanatomy Labeling Services
NIMH R43 MH084358;
NIMH R43 MH60507;
NIMH R44 MH60507
Commercially available nlx_155805 http://www.nitrc.org/projects/manuallabels SCR_009604 2026-09-19 12:57:20 1
Pediatric Imaging Neurocognition and Genetics
 
Resource Report
Resource Website
50+ mentions
Pediatric Imaging Neurocognition and Genetics (RRID:SCR_008953) PING data or information resource, database A large multi-site pediatric MRI and genetics data resource to facilitate studies of the genomic landscape of the developing human brain. It includes information about the developing mental and emotional functions of the children to understand the genetic basis of individual differences in brain structure and connectivity, cognition, and personality. Investigators on the project are studying 1400 children between the ages of 3 and 20 years so that links between genetic variation and developing patterns of brain connectivity can be examined. Investigators interested in the effects of a particular gene will be able to search the database for any brain areas or connections between areas that differ as a function of variation in a particular gene, and also to determine if the genes appear to affect the course of brain development at some point during childhood. A data exploration tool has been created for mapping and analyzing MRI data sets collected for PING and related developmental studies. Approved investigators will be able to view raw image sets and derived 3D brain maps of MRI and DTI data, conduct hypothesis testing, and graph brain area measures as they change across the time course of development. PING Cores * Coordinating Core: Functions include project management, screening of participants and maintaining the database * Neuroimaging Core: applying a standardized high-resolution structural MRI protocol involving 3-D T1-weighted scans, a T2-weighted volume, and a set of diffusion-weighted scans with multiple b values and diffusion directions, scans to estimate MRI relaxation rates, and gradient echo EPI scans for resting state fMRI. Importantly, adaptive motion compensation, using ����??PROMO����??, a novel real-time motion correction algorithm will be used. Specific PING protocols for each scanner manufacturer: ** PING MRI Protocol - GE ** PING MRI Protocol - Philips ** PING MRI Protocol - Siemens * Assessment Core: Cognitive assessments for the PING project are conducted using the NIH Toolbox for Cognition. * Genomics Core: functions as a central repository for receipt of saliva samples collected for each study participant. Once received, samples are catalogued, maintained, and DNA is extracted using state-of-the-field laboratory techniques. Ultimately, genome-wide genotyping is performed on the extracted DNA using the Illumina Human660W-Quad BeadChip. PING involves 10 sites throughout the country including UCSD, University of Hawaii, Scripps Genomics, UCLA, UC Davis, Kennedy Krieger Institute/Johns Hopkins, Sacker Institute/Cornell University, University of Massachusetts, Massachusetts General Hospital/Harvard, and Yale. Families who may want to participate in the study, or others who want to know more about it, may email questions to ping (at) ucsd.edu. pediatric, neuroimaging, genetics, child, early adult human, adolescent, genetic variant, magnetic resonance imaging, brain, gene, brain structure, connectivity, function, brain development, cognition, experimental protocol, saliva, dna, diffusion tensor imaging, image, genotype, dicom, imaging genomics, magnetic resonance, nifti, FASEB list is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
is related to: NIH Toolbox - Assessment of Neurological and Behavioral Function
has parent organization: University of California at San Diego; California; USA
has parent organization: Multimodal Imaging Laboratory
NIDA ;
ARRA ;
NICHD
Data Use Agreement required. nlx_151904 http://www.nitrc.org/projects/ping http://ping.chd.ucsd.edu/ SCR_008953 PING Study, Pediatric Imaging Neurocognition and Genetics (PING) 2026-09-19 12:57:20 80
Functional ROI Atlas
 
Resource Report
Resource Website
Functional ROI Atlas (RRID:SCR_009481) Functional ROI Atlas atlas, data or information resource An effort to provide a set of quasi-probabilistic atlases for established functional ROIs in the human neuroimaging literature. Many atlases exist for various anatomical parcellation schemes, such as the Brodmann areas, the structural atlases, tissue segmentation atlases, etc. To date, however, there is no atlas for so-called functional ROIs. Such fROIs are typically associated with an anatomical label of some kind (e.g. the _fusiform_ face area), but these labels are only approximate and can be misleading inasmuch as fROIs are not constrained by anatomical landmarks, whether cytoarchitectonic or based on sulcal and gyral landmarks. The goal of this project is to provide quasi-probabilistic atlases for fROIs that are based on published coordinates in the neuroimaging literature. This is an open-ended enterprise and the atlas can grow as needed. Members of the neuroscience and neuroimaging community interested in contributing to the project are encouraged to do so. magnetic resonance, nifti, functional roi, region of interest, neuroimaging is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) GNU General Public License, The community can contribute to this resource nlx_155628 SCR_009481 2026-09-19 12:57:20 0
Atlasing of the basal ganglia
 
Resource Report
Resource Website
1+ mentions
Atlasing of the basal ganglia (RRID:SCR_009431) Atlasing of the basal ganglia atlas, data or information resource This atlas takes advantage of ultra-high resolution 7T MRI to provide unprecedented levels of detail on structures of the basal ganglia in-vivo. The atlas includes probability maps of the Subthalamic Nucleus (STh) using T2*-imaging. For now it has been created on 13 young healthy participants with a mean age of 24.38 (range: 22-28, SD: 2.36). We recently also created atlas STh probability maps from 8 middle-aged participants with a mean age of 50.67 (range: 40-59, SD: 6.63), and 9 elderly participants with a mean age of 72.33 (range: 67-77, SD: 2.87). You can find more details about the creation of these maps in the following papers: Young: http://www.ncbi.nlm.nih.gov/pubmed/22227131 Middle-aged & Elderly: http://www.ncbi.nlm.nih.gov/pubmed/23486960 Participating institutions are the Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany, and the Cognitive Science Center Amsterdam, University of Amsterdam, the Netherlands. magnetic resonance, mri, late adult human, early adult human, middle adult human, basal ganglia is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
is related to: LEAD-DBS
Aging PMID:22227131
PMID:23486960
Creative Commons License nlx_155581 SCR_009431 2026-09-19 12:57:20 6
COBRE
 
Resource Report
Resource Website
100+ mentions
COBRE (RRID:SCR_010482) COBRE data or information resource, data set Data set of raw anatomical and functional MR data from 72 patients with Schizophrenia and 75 healthy controls (ages ranging from 18 to 65 in each group). All subjects were screened and excluded if they had: history of neurological disorder, history of mental retardation, history of severe head trauma with more than 5 minutes loss of consciousness, history of substance abuse or dependence within the last 12 months. Diagnostic information was collected using the Structured Clinical Interview used for DSM Disorders (SCID). A multi-echo MPRAGE (MEMPR) sequence was used with the following parameters: TR/TE/TI = 2530/(1.64, 3.5, 5.36, 7.22, 9.08)/900 ms, flip angle = 7��, FOV = 256x256 mm, Slab thickness = 176 mm, Matrix = 256x256x176, Voxel size =1x1x1 mm, Number of echos = 5, Pixel bandwidth =650 Hz, Total scan time = 6 min. With 5 echoes, the TR, TI and time to encode partitions for the MEMPR are similar to that of a conventional MPRAGE, resulting in similar GM/WM/CSF contrast. Rest data was collected with single-shot full k-space echo-planar imaging (EPI) with ramp sampling correction using the intercomissural line (AC-PC) as a reference (TR: 2 s, TE: 29 ms, matrix size: 64x64, 32 slices, voxel size: 3x3x4 mm3). Slice Acquisition Order: Rest scan - collected in the Axial plane - series ascending - multi slice mode - interleaved MPRAGE - collected in the Sag plane - series interleaved - multi slice mode - single shot The following data are released for every participant: * Resting fMRI * Anatomical MRI * Phenotypic data for every participant including: gender, age, handedness and diagnostic information. resting fmri, anatomical mri, phenotype, gender, age, handedness, diagnosis, adult human, fmri, mri, neuroimaging, mental state assessment, clinical is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
has parent organization: Mind Research Network
has parent organization: 1000 Functional Connectomes Project
has parent organization: NeuroImaging Tools and Resources Collaboratory (NITRC)
Schizophrenia, Normal control, Aging NCRR 1P20RR021938-01A2 Creative Commons Attribution-NonCommercial License, Account required nlx_157762 SCR_010482 Center for Biomedical Research Excellence, Center for Biomedical Research Excellence (COBRE) 2026-09-19 12:58:56 123
Stark Cross-Sectional Aging
 
Resource Report
Resource Website
1+ mentions
Stark Cross-Sectional Aging (RRID:SCR_014171) data or information resource, data set Behavioral and imaging data from about 120 participants aged 18-89. Data were collected as part of a grant to use high-resolution imaging and advanced behavioral tasks to understand how aging affects the hippocampus and how this is related to age-related cognitive decline. The full dataset includes traditional neuropsycholgical measures, hippocampal-specific behavioral measures, whole-brain DTI, high-resolution DTI of the medial temporal lobes, and structural MRI including segmentation of grey/white/CSF, of cortical regions and of hippocampal subfields. data set, aging, hippocampus, behavioral, dti, mri, image uses: Neuroimaging Informatics Technology Initiative
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
has parent organization: University of California at Irvine; California; USA
NIA R01 AG034613 Available to the research community SCR_014171 2026-09-19 12:59:14 1
Papaya
 
Resource Report
Resource Website
1+ mentions
Papaya (RRID:SCR_014188) software resource, source code A pure JavaScript medical research image viewer, compatible across a range of popular web browsers. The orthogonal viewer supports NIFTI and DICOM files, overlays and atlas labels. It requires Firefox (7+), Chrome (7+), Safari (6+), MobileSafari (iOS 6+), or IE (10+). source code, javascript, medical research, image viewer is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) Public, Available to the research community https://github.com/rii-mango/Papaya/ SCR_014188 2026-09-19 12:59:14 5
Efficient Permutation Testing
 
Resource Report
Resource Website
Efficient Permutation Testing (RRID:SCR_014104) software resource, source code A Matlab implementation for efficient permutation testing by using matrix completion. permutation, nueroimaging, source code, fast, matlab uses: MATLAB
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
has parent organization: University of Wisconsin-Madison; Wisconsin; USA
Wisconsin Partnership Fund ;
NIA R01 AG040396;
NSF CAREER 1252725;
NSF RI 1116584;
UW ADRC NIA P50 AG033514;
UW ICTR NCRR 1UL1RR025011;
Veterans Administration Merit Review I01CX000165
Available for download, Acknowledgement requested http://pages.cs.wisc.edu/~vamsi/pt_fast.html SCR_014104 Speeding Up Permutation Testing in Neuroimaging 2026-09-19 12:59:14 0
YMDTI: Diffusion Tensor Images of Healthy Young Males
 
Resource Report
Resource Website
YMDTI: Diffusion Tensor Images of Healthy Young Males (RRID:SCR_014183) YMDTI data or information resource, data set A dataset which contains diffusion tensor images of 93 healthy, young male subjects. data set, diffusion tensor image, young male subject is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) Available to the research community SCR_014183 Diffusion Tensor Images of Healthy Young Males 2026-09-19 12:59:14 0
Epilepsy T1 and Hippocampal Segmentation Datasets
 
Resource Report
Resource Website
Epilepsy T1 and Hippocampal Segmentation Datasets (RRID:SCR_014926) data or information resource, data set Shared dataset which consists of skull-stripped T1 MRI images and segmented hippocampi of 163 Temporal Lobe Epilepsy (TLE) patients. The T1 and hippocampal segmentation data of TLE patients are uploaded in three separate datasets which can be accessed from the main site. hippocampus, t1, dataset, skull stripped, mri, segmented hippocampus, epilepsy, temporal lobe epilepsy, tle is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) Available for download SCR_014926 2026-09-19 12:59:16 0
RFT FDR
 
Resource Report
Resource Website
RFT FDR (RRID:SCR_002533) RFT_FDR software application, software resource So far there is a lack for Random Field Theory (RFT) -based multiple comparison correction for surfaces generated in Freesurfer software package. This set of Matlab-based functions can be used for that purpose. They are based on Worsley?s SurfStat toolbox. You also need to have installed Freesurfer software package and included the Freesurfer?s matlab subdirectory in the Matlab?s search path. In addition, this tool implements the RFT-FDR hierarchical correction that can be used for optimizing the amount of smoothing in cortical thickness analyses (Neuroimage 52, 158-171). console (text based), gnome, kde, matlab, mgh/mgz, modeling, magnetic resonance, os independent, rendering, statistical operation, surface analysis, surface rendering, thickness, visualization, random field theory is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
is related to: FreeSurfer
Free, Available for download, Freely available nlx_155938 SCR_002533 RFT-FDR, RFT FDR 2026-09-19 12:57:45 0
NIRx2nirs: A NIRx to .nirs data converter
 
Resource Report
Resource Website
1+ mentions
NIRx2nirs: A NIRx to .nirs data converter (RRID:SCR_002492) NIRx2nirs software application, software resource A matlab script which takes near-infrared spectroscopy data recorded by NIRx system(s) and converts it to a .nirs file format for use with the HOMER2 NIRS processing pacakge. hardware, nirs, fnir, optical imaging, optical imaging, physiological recording is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
is related to: Homer2
Free, Available for download, Freely available nlx_155887 SCR_002492 2026-09-19 12:57:45 1
MBF BioScience: Stereo Investigator
 
Resource Report
Resource Website
100+ mentions
MBF BioScience: Stereo Investigator (RRID:SCR_002526) instrument resource, software resource Stereo Investigator system includes microscope, computer, and Stereo Investigator software. Software works with Brightfield, Multi-Channel Fluorescence, Confocal, and Structured Illumination Microscopes. System used to provide estimates of number, length, area, and volume of cells or biological structures in tissue specimen in areas of neuroscience including neurodegenerative diseases, neuropathy, memory, and behavior, pulmonary research, spinal cord research, and toxicology. stereology, MBF Bioscience, number, length, area, volume cells, biological structures, tissue specimen is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
is listed by: SoftCite
Restricted SciRes_000114, SCR_024705, SCR_018948 http://www.nitrc.org/projects/si_stereology SCR_002526 Stereo Investigator system 2026-09-19 12:57:45 162
Slicer3 Example Modules
 
Resource Report
Resource Website
Slicer3 Example Modules (RRID:SCR_002559) Slicer3 Example Modules software application, software development tool, software resource Example Slicer3 plugins that can be built against a Slicer3 build or a Slicer3 installation. Note: these are for 3D Slicer version 3. There is now a version 4 of 3D Slicer available. Information about extensions for version 4 can be found at the following links: http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/SlicerApplication/ExtensionsManager http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Developers/Tutorials/BuildTestPackageDistributeExtensions analyze, c++, console (text based), computed tomography, dicom, linux, macos, microsoft, magnetic resonance, nifti, pet, spect, platform or development environment, posix/unix-like, win32 (ms windows), windows, windows nt/2000, windows vista is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
is related to: 3D Slicer
is related to: INCF Software Center
Free, Available for download, Freely available nlx_155965 SCR_002559 2026-09-19 12:57:45 0
SPHARM-MAT
 
Resource Report
Resource Website
1+ mentions
SPHARM-MAT (RRID:SCR_002545) SPHARM-MAT software application, software resource, software toolkit A matlab-based 3D shape modeling and analysis toolkit, and is designed to aid statistical shape analysis for identifying morphometric changes in 3D structures of interest related to different conditions. SPHARM-MAT is implemented based on a powerful 3D Fourier surface representation method called SPHARM, which creates parametric surface models using spherical harmonics. analyze, c, matlab, microsoft, morphology, magnetic resonance, nifti, posix/unix-like, quantification, quantitative shape analysis, shape analysis, shape decomposition, spherical harmonics, surface analysis, win32 (ms windows), windows, parametric surface model, spherical harmonics, 3d, shape modeling, analysis, morphometry is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
has parent organization: Indiana University School of Medicine; Indiana; USA
NIBIB R03EB008674-01 Free, Available for download, Freely available nlx_155952 http://www.nitrc.org/projects/spharm-mat SCR_002545 2026-09-19 12:57:45 2
cortex
 
Resource Report
Resource Website
100+ mentions
cortex (RRID:SCR_002467) cortex software application, software resource Software package with functions that will help researchers plan how many subjects per group need to be included in an MRI-based cortical thickness study to ensure a thickness difference is detected. The package requires cortical thickness mapping and co-registration to be carried out using Freesurfer. The power analyses are implemented in the R software package., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. clinical neuroinformatics, mgh/mgz, magnetic resonance, r, surface analysis, thickness, mri, cortical thickness, morphometry, neuroimaging, power analysis, study design, bio.tools is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
is listed by: bio.tools
is listed by: Debian
has parent organization: Brain Research Institute
PMID:22807270 THIS RESOURCE IS NO LONGER IN SERVICE nlx_155842, biotools:cortex http://brain.org.au/software/cortex/power, http://www.nitrc.org/projects/cortex, https://bio.tools/cortex SCR_002467 Sample Size Estimates for Well-Powered Cross-Sectional Cortical Thickness Studies 2026-09-19 12:57:45 374

Can't find your Tool?

We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.

Can't find the RRID you're searching for? X
X
  1. RRID Portal Resources

    Welcome to the RRID Resources search. From here you can search through a compilation of resources used by RRID and see how data is organized within our community.

  2. Navigation

    You are currently on the Community Resources tab looking through categories and sources that RRID has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.

  3. Logging in and Registering

    If you have an account on RRID then you can log in from here to get additional features in RRID such as Collections, Saved Searches, and managing Resources.

  4. Searching

    Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:

    1. Use quotes around phrases you want to match exactly
    2. You can manually AND and OR terms to change how we search between words
    3. You can add "-" to terms to make sure no results return with that term in them (ex. Cerebellum -CA1)
    4. You can add "+" to terms to require they be in the data
    5. Using autocomplete specifies which branch of our semantics you with to search and can help refine your search
  5. Collections

    If you are logged into RRID you can add data records to your collections to create custom spreadsheets across multiple sources of data.

  6. Facets

    Here are the facets that you can filter the data by.

  7. Further Questions

    If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.