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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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YMDTI: Diffusion Tensor Images of Healthy Young Males Resource Report Resource Website |
YMDTI: Diffusion Tensor Images of Healthy Young Males (RRID:SCR_014183) | YMDTI | data or information resource, data set | A dataset which contains diffusion tensor images of 93 healthy, young male subjects. | data set, diffusion tensor image, young male subject | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | Available to the research community | SCR_014183 | Diffusion Tensor Images of Healthy Young Males | 2025-04-07 03:01:13 | 0 | ||||||||
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Brain Segmentation Testing Protocol Resource Report Resource Website |
Brain Segmentation Testing Protocol (RRID:SCR_009445) | Brain Segmentation Testing Protocol | data or information resource, data set | A free collection of MRI brain images for testing segmentation algorithms. It is available for download to assess the accuracy, reproducibility and sensitivity of MRI segmentation software. It includes data from infants and adults as well as patients with Alzheimer's disease. | analyze, magnetic resonance, nifti, oasis, segmentation, software, test data, image collection, mri, segmentation software, infant, adult human, child, alzheimer's disease, brain imaging, data set, research, brain |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: King's College London; London; United Kingdom |
PMID:21835253 | Available for download | nlx_155588 | SCR_009445 | 2025-04-07 02:57:49 | 0 | |||||||
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BRAINSTestData Resource Report Resource Website |
BRAINSTestData (RRID:SCR_009517) | BRAINSTestData | data or information resource, data set | About 1.2GB of anonymized imaging data of many different file formats used by the BRAINS suite of tools (BRAINSFit, GTRACT, BRAINS, BRAINSTracer... and others) as a common set of anonymized data for nightly regression testing. | magnetic resonance, image collection, neuroimaging |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: BRAINSTools |
nlx_155704 | http://www.nitrc.org/projects/brainstestdata | SCR_009517 | 2025-04-07 02:57:54 | 0 | ||||||||
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EEG human categorization data Resource Report Resource Website |
EEG human categorization data (RRID:SCR_009468) | EEG human categorization data | data or information resource, data set | A collection of 32-channel data from 14 subjects (7 males, 7 females) acquired using the Neuroscan software. Subjects are performing a go-nogo categorization task and a go-no recognition task on natural photographs presented very briefly (20 ms). Each subject responded to a total of 2500 trials. Data is CZ referenced and is sampled at 1000 Hz (total data size is 4Gb; more details are given later). | eeg, meg, electrocorticography, male. female | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | GNU General Public License | nlx_155616 | SCR_009468 | 2025-04-07 02:57:51 | 0 | ||||||||
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Diffusion MRI - In-vivo and Phantom Data Resource Report Resource Website 1+ mentions |
Diffusion MRI - In-vivo and Phantom Data (RRID:SCR_009464) | Diffusion MRI - In-vivo and Phantom Data | data or information resource, data set | An open-data initiative for the distributation of common datasets for the evaluation and validation of diffusion MRI processing methods. http://www.dkfz.de/en/medphysrad/projectgroups/dwi/DTI_projects.html#inhalt3 | magnetic resonance, nifti, nrrd |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: German Cancer Research Center works with: FIONA-QC-PHANTOM |
BSD/MIT-Style Open unspecified license License | nlx_155611 | SCR_009464 | 2025-04-07 02:57:50 | 2 | ||||||||
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SR Research EyeLink Eye Trackers Resource Report Resource Website 100+ mentions |
SR Research EyeLink Eye Trackers (RRID:SCR_009602) | EyeLink Eye Trackers | material resource, instrument supplier | THIS RESOURCE IS NO LONGER AVAILABLE,documented on February 1st, 2022. Instrument supplier providing eye tracking capabilities for behavioral labs as well as for MRI, MEG, and EEG research environments. | eeg, meg, electrocorticography, experiment control, eye tracking, hardware, magnetic resonance, physiological recording, response monitoring, mri, eye tracking device | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | THIS RESOURCE IS NO LONGER AVAILABLE | nlx_155956 | SCR_009602 | 2025-04-07 02:58:01 | 144 | ||||||||
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fNIR Devices Resource Report Resource Website 1+ mentions |
fNIR Devices (RRID:SCR_009623) | fNIR Devices | material resource, instrument supplier | fNIR Imager 1100 is a new generation portable functional near-infrared (fNIR) imaging research tool capable of monitoring brain?s hemodynamics and thereby the cognitive state of the subject in natural environments. Neuroimaging Solution for Natural Environments: * fNIR is the only stand-alone and field-deployable technology able to determine localized brain activity. * fNIR can be readily integrated with other physiological and neurobehavioral measures that assess human brain activity, including eye tracking, pupil reflex, respiration and electrodermal activity. fNIR can also complement other techniques. * Studies have shown a positive correlation between a participant's performance and fNIR responses as a function of task load. * It has also been shown that fNIR can effectively monitor attention and working memory in real-life situations. | hardware, nirs/fnir, optical imaging, optical imaging, physiological recording | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | Other/Commercial license License | nlx_155848 | http://www.nitrc.org/projects/fnirdevices | SCR_009623 | 2025-04-07 02:58:03 | 8 | |||||||
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VIEWPixx /3D Resource Report Resource Website 1+ mentions |
VIEWPixx /3D (RRID:SCR_009646) | VIEWPixx /3D | material resource, instrument supplier | A complete display toolbox which has been developed specifically to replace CRTs in vision science labs. The VIEWPixx /3D incorporates industrial LCD glass, and a controller which has been custom designed to support vision research. Their innovative LED backlight design features superior display uniformity, and a wide color gamut exceeding that of any CRT. In addition, it includes an array of peripherals which often need to be synchronized (with microsecond precision) to video during an experiment, including a stereo audio stimulator, a button box port for precise reaction-time measurement, triggers for electrophysiology equipment, and even a complete analog I/O subsystem. It is perfectly suited for presentation of dynamic stimuli, it features 1920 x 1080 resolution, 10-bit intensity on each colour and true 120Hz refresh rate. The VIEWPixx /3D is field upgradable. | domain independent, experiment control, hardware, physiological recording, physiological stimulation, response monitoring, stimulus presentation, vision, visual stimulus | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | nlx_155973 | http://www.nitrc.org/projects/replacement_crt | SCR_009646 | VIEWPixx / 3D, VIEWPixx/3D | 2025-04-07 02:58:05 | 1 | |||||||
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Epilepsy T1 and Hippocampal Segmentation Datasets Resource Report Resource Website |
Epilepsy T1 and Hippocampal Segmentation Datasets (RRID:SCR_014926) | data or information resource, data set | Shared dataset which consists of skull-stripped T1 MRI images and segmented hippocampi of 163 Temporal Lobe Epilepsy (TLE) patients. The T1 and hippocampal segmentation data of TLE patients are uploaded in three separate datasets which can be accessed from the main site. | hippocampus, t1, dataset, skull stripped, mri, segmented hippocampus, epilepsy, temporal lobe epilepsy, tle | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | Available for download | SCR_014926 | 2025-04-07 03:01:38 | 0 | ||||||||||
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Temporal-Lobe: Hippocampal - Parahippocampal Neuroanatomy of the Rat Resource Report Resource Website 1+ mentions |
Temporal-Lobe: Hippocampal - Parahippocampal Neuroanatomy of the Rat (RRID:SCR_002816) | Temporal-lobe.com | data or information resource, data set | Interactive diagram containing existing knowledge of hippocampal-parahippocampal connections in which any connection can be turned on or off at the level of cortical layers. It includes references for each connection. | function, anatomical, connection, cortical, diagram, hippocampus, layer, neuroanatomy, neuroscience, parahippocampal, projection, subfield, temporal, lobe, topological, connectome, magnetic resonance, connectivity, formation, parahippocampal region, retrosplenial cortex, tract tracing |
is used by: NIF Data Federation is used by: Integrated Nervous System Connectivity is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: Rat Hippocampus Atlas is related to: Integrated Manually Extracted Annotation has parent organization: Norwegian University of Science and Technology; Trondheim; Norway |
Research Council of Norway ; various independent donations |
PMID:21847380 PMID:19300446 |
Freely available, Account required | nif-0000-24805 | http://www.nitrc.org/projects/connectivity | SCR_002816 | Parahippocampal-hippocampal network, TEMPORAL-LOBE, Parahippocampal hippocampal connectivity | 2025-04-07 02:53:34 | 7 | ||||
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Internet Brain Segmentation Repository Resource Report Resource Website 10+ mentions |
Internet Brain Segmentation Repository (RRID:SCR_001994) | IBSR | data or information resource, data set | Data set of manually-guided expert segmentation results along with magnetic resonance brain image data. Its purpose is to encourage the development and evaluation of segmentation methods by providing raw test and image data, human expert segmentation results, and methods for comparing segmentation results. Please see the MediaWiki for more information. This repository is meant to contain standard test image data sets which will permit a standardized mechanism for evaluation of the sensitivity of a given analysis method to signal to noise ratio, contrast to noise ratio, shape complexity, degree of partial volume effect, etc. This capability is felt to be essential to further development in the field since many published algorithms tend to only operate successfully under a narrow range of conditions which may not extend to those experienced under the typical clinical imaging setting. This repository is also meant to describe and discuss methods for the comparison of results. | 3d model, anatomy, brainstem, cerebellum, cortex, gray matter, imaging, morphology, mri, segmentation, volume, white matter, adult human, male, child, image collection, application, magnetic resonance, os independent, php, quality metrics, segmentation, test data, web service |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Harvard Medical School; Massachusetts; USA |
Normal, Tumor | NINDS 1 R01 NS34189-01 | Public Domain | nif-0000-00032 | http://www.cma.mgh.harvard.edu/ibsr/ | SCR_001994 | 2025-04-07 02:52:48 | 23 | |||||
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Rosetta Bit Resource Report Resource Website 1+ mentions |
Rosetta Bit (RRID:SCR_001906) | Rosetta Bit | data or information resource, data set | Public datasets that have been transcoded into multiple formats. This library of valid file format conversions (DICOM->NIFTI, DICOM->PAR/REC, etc.) will provide a reference for tool developers seeking to support multiple sources of data. | computed tomography, imaging genomics, magnetic resonance, optical imaging, format conversion, dicom, nifti, dicom, par/rec | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | BIRN Data License | nlx_155947 | SCR_001906 | 2025-04-07 02:52:42 | 1 | ||||||||
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MCIC Resource Report Resource Website 10+ mentions |
MCIC (RRID:SCR_002310) | MCIC | data or information resource, data set | Expertly collected, well-curated data sets consisting of comprehensive clinical characterization and raw structural, functional and diffusion-weighted DICOM images in schizophrenia patients and gender and age-matched controls are now accessible to the scientific community through an on-line data repository (coins.mrn.org). This data repository will be useful to 1) educators in the fields of neuroimaging, medical image analysis and medical imaging informatics who need exemplar data sets for courses and workshops; 2) computer scientists and software algorithm developers for testing and validating novel registration, segmentation, and other analysis software; and 3) scientists who can study schizophrenia by further analysis of this cohort and/or by pooling with other data. | clinical neuroinformatics, dicom, magnetic resonance, image collection, clinical assessment, diagnose, healthy control, neuropsychological test, psychiatric disorder, schizoaffective disorder, schizophrenia, diffusion-weighted |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Mind Research Network - COINS |
Schizophrenia, Normal control | PMID:23760817 | COINS Data Use Agreement | nlx_155657 | SCR_002310 | 2025-04-07 02:53:10 | 30 | ||||||
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NITRC Computational Environment Resource Report Resource Website 1+ mentions |
NITRC Computational Environment (RRID:SCR_002171) | NITRC-CE | service resource, computational hosting | An on-demand, cloud based computational virtual machine pre-installed with popular NITRC neuroimaging tools built using NeuroDebian. For a listing of current NITRC-CE packages visit: http://www.nitrc.org/ce-packages. You can also use the "public Amazon Machine Interface (AMI)" to conduct your analyses on the Amazon EC2 platform. | image analysis software, neuroimaging, neuroimaging tool |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: neurodebian is related to: NITRC Enhanced Services has parent organization: Amazon Web Services |
nlx_155889 | SCR_002171 | NITRC Computational Environment in Amazon Marketplace | 2025-04-07 02:52:59 | 1 | ||||||||
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ABIDE Resource Report Resource Website 100+ mentions |
ABIDE (RRID:SCR_003612) | ABIDE | data or information resource, data set | Resting state functional magnetic resonance imaging (R-fMRI) datasets from 539 individuals with autism spectrum disorder (ASD) and 573 typical controls. This initiative involved 16 international sites, sharing 20 samples yielding 1112 datasets composed of both MRI data and an extensive array of phenotypic information common across nearly all sites. This effort is expected to facilitate discovery science and comparisons across samples. All datasets are anonymous, with no protected health information included. | phenotype, resting state functional magnetic resonance imaging, mri, image, fmri |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: 1000 Functional Connectomes Project has parent organization: NeuroImaging Tools and Resources Collaboratory (NITRC) |
Autism spectrum disorder, Normal | Leon Levy Foundation ; Joseph P. Healy ; Stavros Niarchos Foundation ; NIMH K23MH087770; NIMH R03MH096321 |
Account required, Creative Commons Attribution-NonCommercial-ShareAlike License, v3 | nlx_157761 | SCR_003612 | Autism Brain Imaging Data Exchange | 2025-04-07 02:53:57 | 187 | |||||
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COBRE Resource Report Resource Website 50+ mentions |
COBRE (RRID:SCR_010482) | COBRE | data or information resource, data set | Data set of raw anatomical and functional MR data from 72 patients with Schizophrenia and 75 healthy controls (ages ranging from 18 to 65 in each group). All subjects were screened and excluded if they had: history of neurological disorder, history of mental retardation, history of severe head trauma with more than 5 minutes loss of consciousness, history of substance abuse or dependence within the last 12 months. Diagnostic information was collected using the Structured Clinical Interview used for DSM Disorders (SCID). A multi-echo MPRAGE (MEMPR) sequence was used with the following parameters: TR/TE/TI = 2530/(1.64, 3.5, 5.36, 7.22, 9.08)/900 ms, flip angle = 7��, FOV = 256x256 mm, Slab thickness = 176 mm, Matrix = 256x256x176, Voxel size =1x1x1 mm, Number of echos = 5, Pixel bandwidth =650 Hz, Total scan time = 6 min. With 5 echoes, the TR, TI and time to encode partitions for the MEMPR are similar to that of a conventional MPRAGE, resulting in similar GM/WM/CSF contrast. Rest data was collected with single-shot full k-space echo-planar imaging (EPI) with ramp sampling correction using the intercomissural line (AC-PC) as a reference (TR: 2 s, TE: 29 ms, matrix size: 64x64, 32 slices, voxel size: 3x3x4 mm3). Slice Acquisition Order: Rest scan - collected in the Axial plane - series ascending - multi slice mode - interleaved MPRAGE - collected in the Sag plane - series interleaved - multi slice mode - single shot The following data are released for every participant: * Resting fMRI * Anatomical MRI * Phenotypic data for every participant including: gender, age, handedness and diagnostic information. | resting fmri, anatomical mri, phenotype, gender, age, handedness, diagnosis, adult human, fmri, mri, neuroimaging, mental state assessment, clinical |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Mind Research Network has parent organization: 1000 Functional Connectomes Project has parent organization: NeuroImaging Tools and Resources Collaboratory (NITRC) |
Schizophrenia, Normal control, Aging | NCRR 1P20RR021938-01A2 | Creative Commons Attribution-NonCommercial License, Account required | nlx_157762 | SCR_010482 | Center for Biomedical Research Excellence, Center for Biomedical Research Excellence (COBRE) | 2025-04-07 02:58:55 | 94 | |||||
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MR Connectome Automated Pipeline Resource Report Resource Website |
MR Connectome Automated Pipeline (RRID:SCR_002252) | MRCAP | software resource | Based on JIST and MIPAV, this pipeline combines structural magnetic resonance data with diffusion tensor imaging to estimate a connectome, which is a comprehensive description of the wiring diagram of the brain. | java, magnetic resonance |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: JIST: Java Image Science Toolkit is related to: MIPAV: Medical Image Processing and Visualization |
PMID:22481745 | GNU Lesser General Public License | nlx_155575 | SCR_002252 | Magnetic Resonance Connectome Automated Pipeline, MR Connectome Automated Pipeline (MRCAP) | 2025-02-14 10:29:55 | 0 | ||||||
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ASL spm8 Resource Report Resource Website 1+ mentions |
ASL spm8 (RRID:SCR_008873) | ASL_spm8 | software resource | Quick ASL Wrapper for preprocessing arterial spin labeled (ASL) Data and computing blood flow measurements using UPenn ASL toolbox. | magnetic resonance |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: ASL data processing tool box |
GNU General Public License | nlx_155580 | SCR_008873 | 2025-02-14 10:31:31 | 1 | ||||||||
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ANTsR Resource Report Resource Website 10+ mentions |
ANTsR (RRID:SCR_008891) | ANTsR | software resource | An R extension to ANTs that performs multivariate statistical parametric mapping of DTI, T1 and other datatypes for the purpose of both performing clinical studies and for tracking the performance of ANTs (and other) image processing methodologies. ANTsR depends upon the R statistical language, bash scripts and the ANTs toolkit. Some branches of ANTsR will also depend upon pipedream and specific datasets. Some of these datasets will be open access and, in that case, ANTsR will provide a 100% reproducible neuroimaging study on that data. | neuroimaging, multivariate statistical parametric mapping, dti, t1, image processing, magnetic resonance |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: ANTS - Advanced Normalization ToolS |
BSD License | nlx_151365 | SCR_008891 | 2025-02-14 10:31:31 | 38 | ||||||||
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Cerebral Blood Flow Database and Analysis Pipeline Resource Report Resource Website 1+ mentions |
Cerebral Blood Flow Database and Analysis Pipeline (RRID:SCR_009454) | CBFDAP | software resource | A web enabled data and workflow management system extended from the HID codebase on NITRC specialized for Arterial Spin Labeling data management and analysis (including group analysis) in a centralized manner. | magnetic resonance |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: CBFBIRN has parent organization: University of California at San Diego; California; USA |
BIRN License | nlx_155599 | SCR_009454 | 2025-02-14 10:31:33 | 2 |
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